HEADER HYDROLASE 10-MAY-18 6DE2 TITLE CRYSTAL STRUCTURE OF THE DOUBLE MUTANT (D52N/L375F) OF THE FULL-LENGTH TITLE 2 NT5C2 IN THE ACTIVE STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOSOLIC PURINE 5'-NUCLEOTIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOSOLIC 5'-NUCLEOTIDASE II; COMPND 5 EC: 3.1.3.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NT5C2, NT5B, NT5CP, PNT5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_CELL: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET28ALIC; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PLOC_NT5C2 KEYWDS HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR F.FOROUHAR,C.L.DIECK,G.TZONEVA,Z.CARPENTER,A.AMBESI-IMPIOMBATO, AUTHOR 2 M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE,S.LEW,J.SEETHARAMAN, AUTHOR 3 A.A.FERRANDO,L.TONG REVDAT 4 11-OCT-23 6DE2 1 LINK REVDAT 3 04-DEC-19 6DE2 1 REMARK REVDAT 2 25-JUL-18 6DE2 1 JRNL REVDAT 1 04-JUL-18 6DE2 0 JRNL AUTH C.L.DIECK,G.TZONEVA,F.FOROUHAR,Z.CARPENTER, JRNL AUTH 2 A.AMBESI-IMPIOMBATO,M.SANCHEZ-MARTIN,R.KIRSCHNER-SCHWABE, JRNL AUTH 3 S.LEW,J.SEETHARAMAN,L.TONG,A.A.FERRANDO JRNL TITL STRUCTURE AND MECHANISMS OF NT5C2 MUTATIONS DRIVING JRNL TITL 2 THIOPURINE RESISTANCE IN RELAPSED LYMPHOBLASTIC LEUKEMIA. JRNL REF CANCER CELL V. 34 136 2018 JRNL REFN ISSN 1878-3686 JRNL PMID 29990496 JRNL DOI 10.1016/J.CCELL.2018.06.003 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44471 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4448 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9478 - 6.5202 0.99 1404 195 0.1836 0.1987 REMARK 3 2 6.5202 - 5.1771 1.00 1389 152 0.1738 0.1852 REMARK 3 3 5.1771 - 4.5232 1.00 1389 132 0.1279 0.1468 REMARK 3 4 4.5232 - 4.1099 1.00 1351 141 0.1259 0.1519 REMARK 3 5 4.1099 - 3.8155 1.00 1324 176 0.1388 0.1601 REMARK 3 6 3.8155 - 3.5906 1.00 1347 152 0.1486 0.1676 REMARK 3 7 3.5906 - 3.4108 1.00 1350 136 0.1485 0.1717 REMARK 3 8 3.4108 - 3.2624 1.00 1311 166 0.1592 0.1858 REMARK 3 9 3.2624 - 3.1368 1.00 1352 139 0.1641 0.1619 REMARK 3 10 3.1368 - 3.0286 1.00 1339 141 0.1690 0.1966 REMARK 3 11 3.0286 - 2.9339 1.00 1318 156 0.1606 0.1850 REMARK 3 12 2.9339 - 2.8500 1.00 1348 134 0.1564 0.1971 REMARK 3 13 2.8500 - 2.7750 1.00 1319 149 0.1567 0.1978 REMARK 3 14 2.7750 - 2.7073 1.00 1364 125 0.1555 0.1943 REMARK 3 15 2.7073 - 2.6458 1.00 1344 128 0.1466 0.1939 REMARK 3 16 2.6458 - 2.5895 1.00 1340 136 0.1433 0.1873 REMARK 3 17 2.5895 - 2.5377 1.00 1297 141 0.1494 0.1975 REMARK 3 18 2.5377 - 2.4898 1.00 1341 141 0.1504 0.2285 REMARK 3 19 2.4898 - 2.4453 1.00 1334 147 0.1456 0.1925 REMARK 3 20 2.4453 - 2.4039 1.00 1334 146 0.1438 0.1923 REMARK 3 21 2.4039 - 2.3651 1.00 1306 136 0.1488 0.2304 REMARK 3 22 2.3651 - 2.3287 1.00 1355 135 0.1452 0.2151 REMARK 3 23 2.3287 - 2.2945 1.00 1304 159 0.1509 0.1716 REMARK 3 24 2.2945 - 2.2621 1.00 1297 147 0.1558 0.1936 REMARK 3 25 2.2621 - 2.2316 1.00 1335 148 0.1650 0.2089 REMARK 3 26 2.2316 - 2.2026 1.00 1334 146 0.1610 0.2181 REMARK 3 27 2.2026 - 2.1751 1.00 1262 175 0.1580 0.1976 REMARK 3 28 2.1751 - 2.1489 1.00 1313 160 0.1610 0.2227 REMARK 3 29 2.1489 - 2.1239 1.00 1318 142 0.1631 0.2102 REMARK 3 30 2.1239 - 2.1000 1.00 1304 167 0.1811 0.2369 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.970 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.64 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3994 REMARK 3 ANGLE : 0.836 5394 REMARK 3 CHIRALITY : 0.052 571 REMARK 3 PLANARITY : 0.005 677 REMARK 3 DIHEDRAL : 14.070 2351 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 0.0364 38.9420 19.1527 REMARK 3 T TENSOR REMARK 3 T11: 0.2267 T22: 0.1999 REMARK 3 T33: 0.2029 T12: 0.0028 REMARK 3 T13: 0.0066 T23: 0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.4433 L22: 0.3222 REMARK 3 L33: 0.3444 L12: -0.0853 REMARK 3 L13: 0.0954 L23: -0.0016 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.0502 S13: -0.0188 REMARK 3 S21: 0.0704 S22: -0.0101 S23: 0.0130 REMARK 3 S31: 0.1041 S32: -0.0080 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DE2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234467. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44471 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 48.935 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.80 REMARK 200 R MERGE FOR SHELL (I) : 0.53000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: COMO REMARK 200 STARTING MODEL: 6DDK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M AMMONIUM SULFATE AND 5% (V/V) 2 REMARK 280 -PROPONAL, 5 MM ATP, 5 MM IMP, AND 5 MM MGCL2, MICROBATCH, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 63.35850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.09900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 63.35850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 65.09900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 63.35850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 65.09900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 45.76500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 63.35850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.09900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 75210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 126.71700 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 126.71700 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 602 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 403 REMARK 465 LYS A 404 REMARK 465 HIS A 405 REMARK 465 LEU A 406 REMARK 465 ASP A 407 REMARK 465 SER A 408 REMARK 465 SER A 409 REMARK 465 SER A 410 REMARK 465 ASN A 411 REMARK 465 GLU A 412 REMARK 465 ARG A 413 REMARK 465 PRO A 414 REMARK 465 ASP A 415 REMARK 465 ILE A 416 REMARK 465 THR A 489 REMARK 465 VAL A 490 REMARK 465 GLU A 491 REMARK 465 HIS A 492 REMARK 465 THR A 493 REMARK 465 HIS A 494 REMARK 465 VAL A 495 REMARK 465 ASP A 496 REMARK 465 ILE A 497 REMARK 465 ASN A 498 REMARK 465 GLU A 499 REMARK 465 MET A 500 REMARK 465 GLU A 501 REMARK 465 SER A 502 REMARK 465 PRO A 503 REMARK 465 LEU A 504 REMARK 465 ALA A 505 REMARK 465 THR A 506 REMARK 465 ARG A 507 REMARK 465 ASN A 508 REMARK 465 ARG A 509 REMARK 465 THR A 510 REMARK 465 SER A 511 REMARK 465 VAL A 512 REMARK 465 ASP A 513 REMARK 465 PHE A 514 REMARK 465 LYS A 515 REMARK 465 ASP A 516 REMARK 465 THR A 517 REMARK 465 ASP A 518 REMARK 465 TYR A 519 REMARK 465 LYS A 520 REMARK 465 ARG A 521 REMARK 465 HIS A 522 REMARK 465 GLN A 523 REMARK 465 LEU A 524 REMARK 465 THR A 525 REMARK 465 ARG A 526 REMARK 465 SER A 527 REMARK 465 ILE A 528 REMARK 465 SER A 529 REMARK 465 GLU A 530 REMARK 465 ILE A 531 REMARK 465 LYS A 532 REMARK 465 PRO A 533 REMARK 465 PRO A 534 REMARK 465 ASN A 535 REMARK 465 LEU A 536 REMARK 465 PHE A 537 REMARK 465 PRO A 538 REMARK 465 LEU A 539 REMARK 465 ALA A 540 REMARK 465 PRO A 541 REMARK 465 GLN A 542 REMARK 465 GLU A 543 REMARK 465 ILE A 544 REMARK 465 THR A 545 REMARK 465 HIS A 546 REMARK 465 CYS A 547 REMARK 465 HIS A 548 REMARK 465 ASP A 549 REMARK 465 GLU A 550 REMARK 465 ASP A 551 REMARK 465 ASP A 552 REMARK 465 ASP A 553 REMARK 465 GLU A 554 REMARK 465 GLU A 555 REMARK 465 GLU A 556 REMARK 465 GLU A 557 REMARK 465 GLU A 558 REMARK 465 GLU A 559 REMARK 465 GLU A 560 REMARK 465 GLU A 561 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 833 O HOH A 1017 2.10 REMARK 500 O HOH A 892 O HOH A 1053 2.16 REMARK 500 OH TYR A 470 O HOH A 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 56 -69.71 -129.54 REMARK 500 PRO A 267 35.57 -79.70 REMARK 500 ILE A 357 -62.73 -91.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1137 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH A1138 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A1139 DISTANCE = 7.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ATP A 601 O3G REMARK 620 2 ATP A 601 O1B 89.5 REMARK 620 3 ATP A 601 O3G 0.0 89.5 REMARK 620 4 ATP A 601 O1B 89.5 0.0 89.5 REMARK 620 5 HOH A 727 O 85.0 77.7 85.0 77.7 REMARK 620 6 HOH A 727 O 91.0 106.6 91.0 106.6 174.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ATP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 DBREF 6DE2 A 1 561 UNP P49902 5NTC_HUMAN 1 561 SEQADV 6DE2 GLY A -17 UNP P49902 EXPRESSION TAG SEQADV 6DE2 SER A -16 UNP P49902 EXPRESSION TAG SEQADV 6DE2 SER A -15 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -14 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -13 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -12 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -11 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -10 UNP P49902 EXPRESSION TAG SEQADV 6DE2 HIS A -9 UNP P49902 EXPRESSION TAG SEQADV 6DE2 SER A -8 UNP P49902 EXPRESSION TAG SEQADV 6DE2 SER A -7 UNP P49902 EXPRESSION TAG SEQADV 6DE2 GLY A -6 UNP P49902 EXPRESSION TAG SEQADV 6DE2 LEU A -5 UNP P49902 EXPRESSION TAG SEQADV 6DE2 VAL A -4 UNP P49902 EXPRESSION TAG SEQADV 6DE2 PRO A -3 UNP P49902 EXPRESSION TAG SEQADV 6DE2 ARG A -2 UNP P49902 EXPRESSION TAG SEQADV 6DE2 GLY A -1 UNP P49902 EXPRESSION TAG SEQADV 6DE2 SER A 0 UNP P49902 EXPRESSION TAG SEQADV 6DE2 ASN A 52 UNP P49902 ASP 52 ENGINEERED MUTATION SEQADV 6DE2 PHE A 375 UNP P49902 LEU 375 ENGINEERED MUTATION SEQRES 1 A 579 GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 579 VAL PRO ARG GLY SER MET SER THR SER TRP SER ASP ARG SEQRES 3 A 579 LEU GLN ASN ALA ALA ASP MET PRO ALA ASN MET ASP LYS SEQRES 4 A 579 HIS ALA LEU LYS LYS TYR ARG ARG GLU ALA TYR HIS ARG SEQRES 5 A 579 VAL PHE VAL ASN ARG SER LEU ALA MET GLU LYS ILE LYS SEQRES 6 A 579 CYS PHE GLY PHE ASN MET ASP TYR THR LEU ALA VAL TYR SEQRES 7 A 579 LYS SER PRO GLU TYR GLU SER LEU GLY PHE GLU LEU THR SEQRES 8 A 579 VAL GLU ARG LEU VAL SER ILE GLY TYR PRO GLN GLU LEU SEQRES 9 A 579 LEU SER PHE ALA TYR ASP SER THR PHE PRO THR ARG GLY SEQRES 10 A 579 LEU VAL PHE ASP THR LEU TYR GLY ASN LEU LEU LYS VAL SEQRES 11 A 579 ASP ALA TYR GLY ASN LEU LEU VAL CYS ALA HIS GLY PHE SEQRES 12 A 579 ASN PHE ILE ARG GLY PRO GLU THR ARG GLU GLN TYR PRO SEQRES 13 A 579 ASN LYS PHE ILE GLN ARG ASP ASP THR GLU ARG PHE TYR SEQRES 14 A 579 ILE LEU ASN THR LEU PHE ASN LEU PRO GLU THR TYR LEU SEQRES 15 A 579 LEU ALA CYS LEU VAL ASP PHE PHE THR ASN CYS PRO ARG SEQRES 16 A 579 TYR THR SER CYS GLU THR GLY PHE LYS ASP GLY ASP LEU SEQRES 17 A 579 PHE MET SER TYR ARG SER MET PHE GLN ASP VAL ARG ASP SEQRES 18 A 579 ALA VAL ASP TRP VAL HIS TYR LYS GLY SER LEU LYS GLU SEQRES 19 A 579 LYS THR VAL GLU ASN LEU GLU LYS TYR VAL VAL LYS ASP SEQRES 20 A 579 GLY LYS LEU PRO LEU LEU LEU SER ARG MET LYS GLU VAL SEQRES 21 A 579 GLY LYS VAL PHE LEU ALA THR ASN SER ASP TYR LYS TYR SEQRES 22 A 579 THR ASP LYS ILE MET THR TYR LEU PHE ASP PHE PRO HIS SEQRES 23 A 579 GLY PRO LYS PRO GLY SER SER HIS ARG PRO TRP GLN SER SEQRES 24 A 579 TYR PHE ASP LEU ILE LEU VAL ASP ALA ARG LYS PRO LEU SEQRES 25 A 579 PHE PHE GLY GLU GLY THR VAL LEU ARG GLN VAL ASP THR SEQRES 26 A 579 LYS THR GLY LYS LEU LYS ILE GLY THR TYR THR GLY PRO SEQRES 27 A 579 LEU GLN HIS GLY ILE VAL TYR SER GLY GLY SER SER ASP SEQRES 28 A 579 THR ILE CYS ASP LEU LEU GLY ALA LYS GLY LYS ASP ILE SEQRES 29 A 579 LEU TYR ILE GLY ASP HIS ILE PHE GLY ASP ILE LEU LYS SEQRES 30 A 579 SER LYS LYS ARG GLN GLY TRP ARG THR PHE LEU VAL ILE SEQRES 31 A 579 PRO GLU PHE ALA GLN GLU LEU HIS VAL TRP THR ASP LYS SEQRES 32 A 579 SER SER LEU PHE GLU GLU LEU GLN SER LEU ASP ILE PHE SEQRES 33 A 579 LEU ALA GLU LEU TYR LYS HIS LEU ASP SER SER SER ASN SEQRES 34 A 579 GLU ARG PRO ASP ILE SER SER ILE GLN ARG ARG ILE LYS SEQRES 35 A 579 LYS VAL THR HIS ASP MET ASP MET CYS TYR GLY MET MET SEQRES 36 A 579 GLY SER LEU PHE ARG SER GLY SER ARG GLN THR LEU PHE SEQRES 37 A 579 ALA SER GLN VAL MET ARG TYR ALA ASP LEU TYR ALA ALA SEQRES 38 A 579 SER PHE ILE ASN LEU LEU TYR TYR PRO PHE SER TYR LEU SEQRES 39 A 579 PHE ARG ALA ALA HIS VAL LEU MET PRO HIS GLU SER THR SEQRES 40 A 579 VAL GLU HIS THR HIS VAL ASP ILE ASN GLU MET GLU SER SEQRES 41 A 579 PRO LEU ALA THR ARG ASN ARG THR SER VAL ASP PHE LYS SEQRES 42 A 579 ASP THR ASP TYR LYS ARG HIS GLN LEU THR ARG SER ILE SEQRES 43 A 579 SER GLU ILE LYS PRO PRO ASN LEU PHE PRO LEU ALA PRO SEQRES 44 A 579 GLN GLU ILE THR HIS CYS HIS ASP GLU ASP ASP ASP GLU SEQRES 45 A 579 GLU GLU GLU GLU GLU GLU GLU HET ATP A 601 31 HET MG A 602 1 HET PO4 A 603 5 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ATP C10 H16 N5 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 PO4 O4 P 3- FORMUL 5 EDO 3(C2 H6 O2) FORMUL 8 HOH *439(H2 O) HELIX 1 AA1 SER A 4 ASP A 14 1 11 HELIX 2 AA2 ASP A 20 ARG A 28 1 9 HELIX 3 AA3 ARG A 29 ARG A 34 5 6 HELIX 4 AA4 GLU A 44 ILE A 46 5 3 HELIX 5 AA5 PRO A 63 ILE A 80 1 18 HELIX 6 AA6 PRO A 83 PHE A 89 5 7 HELIX 7 AA7 ARG A 129 ARG A 134 1 6 HELIX 8 AA8 THR A 155 PHE A 157 5 3 HELIX 9 AA9 ASN A 158 CYS A 175 1 18 HELIX 10 AB1 TYR A 194 LYS A 211 1 18 HELIX 11 AB2 SER A 213 GLU A 220 1 8 HELIX 12 AB3 ASN A 221 VAL A 226 1 6 HELIX 13 AB4 GLY A 230 GLY A 243 1 14 HELIX 14 AB5 ASP A 252 PHE A 264 1 13 HELIX 15 AB6 PRO A 278 PHE A 283 5 6 HELIX 16 AB7 PRO A 293 GLY A 297 5 5 HELIX 17 AB8 SER A 331 GLY A 340 1 10 HELIX 18 AB9 LYS A 342 LYS A 344 5 3 HELIX 19 AC1 ASP A 356 GLY A 365 1 10 HELIX 20 AC2 GLU A 374 LYS A 385 1 12 HELIX 21 AC3 LYS A 385 LEU A 402 1 18 HELIX 22 AC4 SER A 418 CYS A 433 1 16 HELIX 23 AC5 THR A 448 ALA A 458 1 11 HELIX 24 AC6 SER A 464 TYR A 471 5 8 HELIX 25 AC7 MET A 484 SER A 488 5 5 SHEET 1 AA110 PHE A 36 VAL A 37 0 SHEET 2 AA110 LEU A 460 ALA A 462 -1 O TYR A 461 N PHE A 36 SHEET 3 AA110 ARG A 367 VAL A 371 1 N LEU A 370 O LEU A 460 SHEET 4 AA110 ILE A 346 GLY A 350 1 N GLY A 350 O VAL A 371 SHEET 5 AA110 CYS A 48 PHE A 51 1 N GLY A 50 O ILE A 349 SHEET 6 AA110 LYS A 244 ALA A 248 1 O LYS A 244 N PHE A 49 SHEET 7 AA110 LEU A 285 VAL A 288 1 O LEU A 285 N LEU A 247 SHEET 8 AA110 TYR A 327 GLY A 329 1 O TYR A 327 N ILE A 286 SHEET 9 AA110 LEU A 302 ASP A 306 -1 N ARG A 303 O SER A 328 SHEET 10 AA110 LYS A 311 LEU A 312 -1 O LYS A 311 N ASP A 306 SHEET 1 AA2 2 LEU A 41 ALA A 42 0 SHEET 2 AA2 2 LEU A 476 PHE A 477 -1 O PHE A 477 N LEU A 41 SHEET 1 AA3 5 ASN A 126 PHE A 127 0 SHEET 2 AA3 5 LEU A 118 HIS A 123 -1 N HIS A 123 O ASN A 126 SHEET 3 AA3 5 ASN A 108 VAL A 112 -1 N LYS A 111 O LEU A 119 SHEET 4 AA3 5 VAL A 101 ASP A 103 -1 N VAL A 101 O LEU A 110 SHEET 5 AA3 5 PHE A 150 ILE A 152 -1 O TYR A 151 N PHE A 102 SHEET 1 AA4 3 THR A 179 CYS A 181 0 SHEET 2 AA4 3 GLY A 184 ASP A 187 -1 O LYS A 186 N THR A 179 SHEET 3 AA4 3 LEU A 190 SER A 193 -1 O LEU A 190 N ASP A 187 SHEET 1 AA5 2 ARG A 442 SER A 443 0 SHEET 2 AA5 2 ARG A 446 GLN A 447 -1 O ARG A 446 N SER A 443 LINK O3G ATP A 601 MG MG A 602 1555 1555 2.00 LINK O1B ATP A 601 MG MG A 602 1555 1555 1.98 LINK O3G ATP A 601 MG MG A 602 1555 3555 2.00 LINK O1B ATP A 601 MG MG A 602 1555 3555 1.98 LINK MG MG A 602 O HOH A 727 1555 1555 2.09 LINK MG MG A 602 O HOH A 727 1555 3555 2.08 CISPEP 1 SER A 62 PRO A 63 0 0.31 CISPEP 2 LYS A 292 PRO A 293 0 6.35 SITE 1 AC1 18 ARG A 144 ASP A 145 ASN A 154 PHE A 354 SITE 2 AC1 18 LYS A 362 GLN A 453 ARG A 456 TYR A 457 SITE 3 AC1 18 MG A 602 HOH A 720 HOH A 727 HOH A 812 SITE 4 AC1 18 HOH A 837 HOH A 877 HOH A 896 HOH A 897 SITE 5 AC1 18 HOH A 918 HOH A 994 SITE 1 AC2 2 ATP A 601 HOH A 727 SITE 1 AC3 8 ASN A 52 MET A 53 ASP A 54 THR A 249 SITE 2 AC3 8 ASN A 250 LYS A 292 HOH A 754 HOH A 765 SITE 1 AC4 8 ASP A 252 TYR A 253 VAL A 288 ASP A 289 SITE 2 AC4 8 GLY A 310 LEU A 312 HOH A 741 HOH A 983 SITE 1 AC5 5 ARG A 202 ASP A 206 HIS A 209 HOH A 755 SITE 2 AC5 5 HOH A 953 SITE 1 AC6 6 ASP A 54 PHE A 157 HIS A 209 LYS A 215 SITE 2 AC6 6 SER A 251 TYR A 255 CRYST1 91.530 126.717 130.198 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010925 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007681 0.00000