HEADER TRANSFERASE/TRANSFERASE INHIBITOR 12-MAY-18 6DEK TITLE CRYSTAL STRUCTURE OF CANDIDA ALBICANS ACETOHYDROXYACID SYNTHASE TITLE 2 CATALYTIC SUBUNIT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACETOLACTATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.2.1.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANDIDA ALBICANS (STRAIN SC5314 / ATCC MYA- SOURCE 3 2876); SOURCE 4 ORGANISM_COMMON: YEAST; SOURCE 5 ORGANISM_TAXID: 237561; SOURCE 6 STRAIN: SC5314 / ATCC MYA-2876; SOURCE 7 ATCC: SC5314; SOURCE 8 GENE: ILV2, ORF19.1613, CAALFM_C302320WA; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PET30A(+) KEYWDS AHAS, ACETOHYDROXYACID SYNTHASE, ACETOLACTATE SYNTHASE, HERBICIDE, KEYWDS 2 THIAMIN DIPHOSPHATE, FAD, TRANSFERASE, TRANSFERASE-TRANSFERASE KEYWDS 3 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.GARCIA,L.W.GUDDAT REVDAT 5 11-OCT-23 6DEK 1 REMARK REVDAT 4 08-JAN-20 6DEK 1 REMARK REVDAT 3 17-OCT-18 6DEK 1 COMPND JRNL REVDAT 2 10-OCT-18 6DEK 1 COMPND JRNL REVDAT 1 26-SEP-18 6DEK 0 JRNL AUTH M.D.GARCIA,S.M.H.CHUA,Y.S.LOW,Y.T.LEE,K.AGNEW-FRANCIS, JRNL AUTH 2 J.G.WANG,A.NOUWENS,T.LONHIENNE,C.M.WILLIAMS,J.A.FRASER, JRNL AUTH 3 L.W.GUDDAT JRNL TITL COMMERCIAL AHAS-INHIBITING HERBICIDES ARE PROMISING DRUG JRNL TITL 2 LEADS FOR THE TREATMENT OF HUMAN FUNGAL PATHOGENIC JRNL TITL 3 INFECTIONS. JRNL REF PROC. NATL. ACAD. SCI. V. 115 E9649 2018 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 30249642 JRNL DOI 10.1073/PNAS.1809422115 REMARK 2 REMARK 2 RESOLUTION. 2.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 33110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.1346 - 7.1546 0.93 2318 149 0.1371 0.1470 REMARK 3 2 7.1546 - 5.6815 0.96 2239 145 0.1491 0.1765 REMARK 3 3 5.6815 - 4.9641 0.96 2233 143 0.1310 0.1593 REMARK 3 4 4.9641 - 4.5106 0.96 2206 141 0.1097 0.1498 REMARK 3 5 4.5106 - 4.1875 0.97 2213 142 0.1184 0.1668 REMARK 3 6 4.1875 - 3.9407 0.98 2237 145 0.1349 0.1642 REMARK 3 7 3.9407 - 3.7434 0.98 2204 141 0.1410 0.1856 REMARK 3 8 3.7434 - 3.5805 0.98 2217 142 0.1627 0.1829 REMARK 3 9 3.5805 - 3.4427 0.99 2233 144 0.1707 0.2014 REMARK 3 10 3.4427 - 3.3240 0.99 2212 142 0.1888 0.2394 REMARK 3 11 3.3240 - 3.2200 0.99 2229 143 0.2044 0.2666 REMARK 3 12 3.2200 - 3.1280 0.99 2192 142 0.2177 0.2546 REMARK 3 13 3.1280 - 3.0457 0.99 2235 143 0.2350 0.2720 REMARK 3 14 3.0457 - 2.9714 0.96 2143 137 0.2832 0.3185 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4740 REMARK 3 ANGLE : 0.721 6465 REMARK 3 CHIRALITY : 0.025 737 REMARK 3 PLANARITY : 0.003 831 REMARK 3 DIHEDRAL : 14.468 1756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DEK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.4-9.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : SI(III) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33165 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.970 REMARK 200 RESOLUTION RANGE LOW (A) : 49.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.14300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.79200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1T9B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 77.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 MM FAD, 1 MM THDP, 5 MM MGCL2, 5 MM REMARK 280 DTT, 3 MM SODIUM PYRUVATE, 1 M NA/K TARTRATE, 0.1 M CHES, AND REMARK 280 0.2 M SODIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.41733 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.20867 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 118.41733 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.20867 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 118.41733 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 59.20867 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 118.41733 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 59.20867 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 78980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -191.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.01950 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 457.36274 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 264.05850 REMARK 350 BIOMT2 3 -0.866025 0.500000 0.000000 152.45425 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 59.20867 REMARK 350 BIOMT1 4 0.500000 0.866025 0.000000 -176.03900 REMARK 350 BIOMT2 4 0.866025 -0.500000 0.000000 304.90849 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 59.20867 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 880 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 885 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 886 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 VAL A 13 REMARK 465 PRO A 14 REMARK 465 ARG A 15 REMARK 465 GLY A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 MET A 19 REMARK 465 LYS A 20 REMARK 465 GLU A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 LYS A 26 REMARK 465 PHE A 27 REMARK 465 GLU A 28 REMARK 465 ARG A 29 REMARK 465 GLN A 30 REMARK 465 HIS A 31 REMARK 465 MET A 32 REMARK 465 ASP A 33 REMARK 465 SER A 34 REMARK 465 PRO A 35 REMARK 465 ASP A 36 REMARK 465 LEU A 37 REMARK 465 GLY A 38 REMARK 465 THR A 39 REMARK 465 ASP A 40 REMARK 465 ASP A 41 REMARK 465 ASP A 42 REMARK 465 ASP A 43 REMARK 465 LYS A 44 REMARK 465 ALA A 45 REMARK 465 MET A 46 REMARK 465 ALA A 47 REMARK 465 PHE A 48 REMARK 465 ASN A 49 REMARK 465 THR A 50 REMARK 465 ALA A 51 REMARK 465 ASP A 52 REMARK 465 THR A 53 REMARK 465 SER A 54 REMARK 465 THR A 55 REMARK 465 GLN A 56 REMARK 465 PRO A 57 REMARK 465 ILE A 58 REMARK 465 ILE A 59 REMARK 465 ASN A 60 REMARK 465 ASP A 61 REMARK 465 PRO A 62 REMARK 465 THR A 63 REMARK 465 LEU A 64 REMARK 465 ASN A 65 REMARK 465 LYS A 66 REMARK 465 HIS A 67 REMARK 465 GLN A 68 REMARK 465 SER A 69 REMARK 465 SER A 70 REMARK 465 ALA A 71 REMARK 465 ILE A 72 REMARK 465 SER A 73 REMARK 465 ARG A 74 REMARK 465 LYS A 75 REMARK 465 GLY A 193 REMARK 465 THR A 194 REMARK 465 ASP A 195 REMARK 465 ALA A 196 REMARK 465 PHE A 197 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 SER A 270 REMARK 465 GLN A 271 REMARK 465 ILE A 272 REMARK 465 THR A 273 REMARK 465 LYS A 274 REMARK 465 LYS A 275 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 LYS A 77 CG CD CE NZ REMARK 470 GLU A 78 CG CD OE1 OE2 REMARK 470 GLN A 79 CG CD OE1 NE2 REMARK 470 ASN A 267 CG OD1 ND2 REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 407 CG CD CE NZ REMARK 470 GLU A 442 CG CD OE1 OE2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLN A 481 CG CD OE1 NE2 REMARK 470 GLU A 666 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 179 91.49 -67.95 REMARK 500 ASP A 346 -160.24 68.59 REMARK 500 VAL A 412 -60.50 -98.25 REMARK 500 ASP A 659 72.36 -101.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 702 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 339 OE1 REMARK 620 2 ASP A 346 OD1 83.8 REMARK 620 3 GLN A 502 O 158.5 109.9 REMARK 620 4 PHE A 504 O 77.8 161.6 87.6 REMARK 620 5 HOH A 817 O 81.4 72.9 86.9 103.5 REMARK 620 6 HOH A 884 O 104.7 92.5 91.6 92.7 163.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 546 OD1 REMARK 620 2 ASN A 573 OD1 87.6 REMARK 620 3 GLU A 575 O 112.0 90.9 REMARK 620 4 TPP A 704 O2A 81.7 167.1 99.7 REMARK 620 5 TPP A 704 O1B 145.6 106.1 99.4 79.5 REMARK 620 6 HOH A 814 O 71.4 82.4 172.5 87.4 79.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FAD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TPP A 704 DBREF1 6DEK A 47 683 UNP A0A1D8PJF9_CANAL DBREF2 6DEK A A0A1D8PJF9 47 683 SEQADV 6DEK MET A 2 UNP A0A1D8PJF INITIATING METHIONINE SEQADV 6DEK HIS A 3 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 4 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 5 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 6 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 7 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 8 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK SER A 9 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK SER A 10 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLY A 11 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK LEU A 12 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK VAL A 13 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK PRO A 14 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ARG A 15 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLY A 16 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK SER A 17 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLY A 18 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK MET A 19 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK LYS A 20 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLU A 21 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK THR A 22 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ALA A 23 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ALA A 24 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ALA A 25 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK LYS A 26 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK PHE A 27 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLU A 28 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ARG A 29 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLN A 30 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK HIS A 31 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK MET A 32 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 33 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK SER A 34 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK PRO A 35 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 36 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK LEU A 37 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK GLY A 38 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK THR A 39 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 40 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 41 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 42 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ASP A 43 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK LYS A 44 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK ALA A 45 UNP A0A1D8PJF EXPRESSION TAG SEQADV 6DEK MET A 46 UNP A0A1D8PJF EXPRESSION TAG SEQRES 1 A 682 MET HIS HIS HIS HIS HIS HIS SER SER GLY LEU VAL PRO SEQRES 2 A 682 ARG GLY SER GLY MET LYS GLU THR ALA ALA ALA LYS PHE SEQRES 3 A 682 GLU ARG GLN HIS MET ASP SER PRO ASP LEU GLY THR ASP SEQRES 4 A 682 ASP ASP ASP LYS ALA MET ALA PHE ASN THR ALA ASP THR SEQRES 5 A 682 SER THR GLN PRO ILE ILE ASN ASP PRO THR LEU ASN LYS SEQRES 6 A 682 HIS GLN SER SER ALA ILE SER ARG LYS LYS LYS GLU GLN SEQRES 7 A 682 LEU MET ASP ASP SER PHE ILE GLY LEU THR GLY GLY GLU SEQRES 8 A 682 ILE PHE HIS GLU MET MET LEU ARG HIS LYS VAL ASP THR SEQRES 9 A 682 VAL PHE GLY TYR ALA GLY GLY ALA ILE LEU PRO VAL PHE SEQRES 10 A 682 ASP ALA ILE TYR ASN SER ASP LYS PHE LYS PHE VAL LEU SEQRES 11 A 682 PRO ARG HIS GLU GLN GLY ALA GLY HIS MET ALA GLU GLY SEQRES 12 A 682 TYR ALA ARG ALA SER GLY LYS PRO GLY VAL VAL LEU VAL SEQRES 13 A 682 THR SER GLY PRO GLY ALA THR ASN VAL ILE THR PRO MET SEQRES 14 A 682 ALA ASP ALA LEU MET ASP GLY VAL PRO LEU VAL VAL PHE SEQRES 15 A 682 SER GLY GLN VAL PRO THR THR ALA ILE GLY THR ASP ALA SEQRES 16 A 682 PHE GLN GLU ALA ASP ILE VAL GLY ILE SER ARG SER CYS SEQRES 17 A 682 THR LYS TRP ASN VAL MET VAL LYS ASN VAL ALA GLU LEU SEQRES 18 A 682 PRO ARG ARG ILE ASN GLU ALA PHE GLU ILE ALA THR THR SEQRES 19 A 682 GLY ARG PRO GLY PRO VAL LEU VAL ASP LEU PRO LYS ASP SEQRES 20 A 682 VAL THR ALA SER ILE LEU ARG GLU SER ILE PRO ILE ASN SEQRES 21 A 682 THR THR LEU PRO SER ASN ALA LEU SER GLN ILE THR LYS SEQRES 22 A 682 LYS ALA VAL SER GLU PHE THR SER GLU ALA ILE LYS ARG SEQRES 23 A 682 ALA ALA ASN ILE LEU ASN LYS ALA LYS LYS PRO ILE ILE SEQRES 24 A 682 TYR ALA GLY ALA GLY ILE LEU ASN ASN GLU GLN GLY PRO SEQRES 25 A 682 LYS LEU LEU LYS GLU LEU ALA ASP LYS ALA ASN ILE PRO SEQRES 26 A 682 VAL THR THR THR LEU GLN GLY LEU GLY ALA PHE ASP GLN SEQRES 27 A 682 ARG ASP PRO LYS SER LEU ASP MET LEU GLY MET HIS GLY SEQRES 28 A 682 SER ALA ALA ALA ASN THR ALA ILE GLN ASN ALA ASP CYS SEQRES 29 A 682 ILE ILE ALA LEU GLY ALA ARG PHE ASP ASP ARG VAL THR SEQRES 30 A 682 GLY ASN ILE SER LYS PHE ALA PRO GLU ALA LYS LEU ALA SEQRES 31 A 682 ALA SER GLU GLY ARG GLY GLY ILE LEU HIS PHE GLU ILE SEQRES 32 A 682 SER PRO LYS ASN ILE ASN LYS VAL VAL GLU ALA THR GLU SEQRES 33 A 682 ALA ILE GLU GLY ASP VAL THR ALA ASN LEU GLN SER PHE SEQRES 34 A 682 ILE PRO LEU VAL ASP SER ILE GLU ASN ARG PRO GLU TRP SEQRES 35 A 682 PHE ASN LYS ILE ASN GLU TRP LYS LYS LYS TYR PRO TYR SEQRES 36 A 682 SER TYR GLN LEU GLU THR PRO GLY SER LEU ILE LYS PRO SEQRES 37 A 682 GLN THR LEU ILE LYS GLU ILE SER ASP GLN ALA GLN THR SEQRES 38 A 682 TYR ASN LYS GLU VAL ILE VAL THR THR GLY VAL GLY GLN SEQRES 39 A 682 HIS GLN MET TRP ALA ALA GLN HIS PHE THR TRP THR GLN SEQRES 40 A 682 PRO ARG THR MET ILE THR SER GLY GLY LEU GLY THR MET SEQRES 41 A 682 GLY TYR GLY LEU PRO ALA ALA ILE GLY ALA GLN VAL ALA SEQRES 42 A 682 LYS PRO ASP ALA ILE VAL ILE ASP ILE ASP GLY ASP ALA SEQRES 43 A 682 SER PHE ASN MET THR LEU THR GLU LEU SER SER ALA VAL SEQRES 44 A 682 GLN ALA GLY ALA PRO ILE LYS VAL CYS VAL LEU ASN ASN SEQRES 45 A 682 GLU GLU GLN GLY MET VAL THR GLN TRP GLN SER LEU PHE SEQRES 46 A 682 TYR GLU HIS ARG TYR SER HIS THR HIS GLN SER ASN PRO SEQRES 47 A 682 ASP PHE MET LYS LEU ALA GLU SER MET ASN VAL LYS GLY SEQRES 48 A 682 ILE ARG ILE THR ASN GLN GLN GLU LEU LYS SER GLY VAL SEQRES 49 A 682 LYS GLU PHE LEU ASP ALA THR GLU PRO VAL LEU LEU GLU SEQRES 50 A 682 VAL ILE VAL GLU LYS LYS VAL PRO VAL LEU PRO MET VAL SEQRES 51 A 682 PRO ALA GLY LYS ALA LEU ASP ASP PHE ILE LEU TRP ASP SEQRES 52 A 682 ALA GLU VAL GLU LYS GLN GLN ASN ASP LEU ARG LYS GLU SEQRES 53 A 682 ARG THR GLY GLY LYS TYR HET FAD A 701 53 HET K A 702 1 HET MG A 703 1 HET TPP A 704 26 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM K POTASSIUM ION HETNAM MG MAGNESIUM ION HETNAM TPP THIAMINE DIPHOSPHATE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 K K 1+ FORMUL 4 MG MG 2+ FORMUL 5 TPP C12 H19 N4 O7 P2 S 1+ FORMUL 6 HOH *86(H2 O) HELIX 1 AA1 THR A 89 HIS A 101 1 13 HELIX 2 AA2 ILE A 114 ASP A 119 1 6 HELIX 3 AA3 HIS A 134 GLY A 150 1 17 HELIX 4 AA4 GLY A 160 ASN A 165 1 6 HELIX 5 AA5 VAL A 166 GLY A 177 1 12 HELIX 6 AA6 PRO A 188 ILE A 192 5 5 HELIX 7 AA7 ASP A 201 SER A 206 1 6 HELIX 8 AA8 ARG A 207 CYS A 209 5 3 HELIX 9 AA9 ASN A 218 ALA A 220 5 3 HELIX 10 AB1 GLU A 221 THR A 235 1 15 HELIX 11 AB2 LYS A 247 SER A 252 1 6 HELIX 12 AB3 SER A 278 ASN A 293 1 16 HELIX 13 AB4 ALA A 304 ASN A 308 5 5 HELIX 14 AB5 GLN A 311 ALA A 323 1 13 HELIX 15 AB6 SER A 353 ALA A 363 1 11 HELIX 16 AB7 ASP A 374 GLY A 379 1 6 HELIX 17 AB8 ALA A 385 GLU A 394 1 10 HELIX 18 AB9 SER A 405 ILE A 409 5 5 HELIX 19 AC1 ASP A 422 ILE A 431 1 10 HELIX 20 AC2 PRO A 432 VAL A 434 5 3 HELIX 21 AC3 ARG A 440 TYR A 454 1 15 HELIX 22 AC4 LYS A 468 GLN A 481 1 14 HELIX 23 AC5 GLY A 494 PHE A 504 1 11 HELIX 24 AC6 TYR A 523 LYS A 535 1 13 HELIX 25 AC7 ASP A 546 LEU A 553 1 8 HELIX 26 AC8 GLU A 555 GLY A 563 1 9 HELIX 27 AC9 GLN A 576 TYR A 587 1 12 HELIX 28 AD1 ASP A 600 MET A 608 1 9 HELIX 29 AD2 ASN A 617 GLN A 619 5 3 HELIX 30 AD3 GLU A 620 ALA A 631 1 12 HELIX 31 AD4 ASP A 664 GLY A 680 1 17 SHEET 1 AA1 2 MET A 81 ASP A 82 0 SHEET 2 AA1 2 ILE A 258 PRO A 259 -1 O ILE A 258 N ASP A 82 SHEET 1 AA2 6 LYS A 128 VAL A 130 0 SHEET 2 AA2 6 THR A 105 GLY A 108 1 N VAL A 106 O VAL A 130 SHEET 3 AA2 6 GLY A 153 VAL A 157 1 O VAL A 154 N PHE A 107 SHEET 4 AA2 6 LEU A 180 GLN A 186 1 O PHE A 183 N VAL A 155 SHEET 5 AA2 6 VAL A 241 PRO A 246 1 O VAL A 241 N VAL A 182 SHEET 6 AA2 6 TRP A 212 MET A 215 1 N VAL A 214 O ASP A 244 SHEET 1 AA3 6 SER A 344 MET A 347 0 SHEET 2 AA3 6 VAL A 327 THR A 329 1 N VAL A 327 O LEU A 345 SHEET 3 AA3 6 PRO A 298 ALA A 302 1 N ILE A 300 O THR A 328 SHEET 4 AA3 6 CYS A 365 LEU A 369 1 O ILE A 367 N TYR A 301 SHEET 5 AA3 6 GLY A 398 GLU A 403 1 O LEU A 400 N ILE A 366 SHEET 6 AA3 6 GLU A 417 GLU A 420 1 O GLU A 417 N HIS A 401 SHEET 1 AA4 6 MET A 512 ILE A 513 0 SHEET 2 AA4 6 VAL A 487 THR A 491 1 N VAL A 489 O ILE A 513 SHEET 3 AA4 6 ILE A 539 GLY A 545 1 O ILE A 539 N ILE A 488 SHEET 4 AA4 6 LYS A 567 ASN A 572 1 O LYS A 567 N ASP A 542 SHEET 5 AA4 6 VAL A 635 ILE A 640 1 O LEU A 637 N VAL A 568 SHEET 6 AA4 6 LYS A 611 ILE A 615 1 N LYS A 611 O LEU A 636 LINK OE1 GLN A 339 K K A 702 1555 1555 2.88 LINK OD1 ASP A 346 K K A 702 1555 1555 2.79 LINK O GLN A 502 K K A 702 1555 1555 2.77 LINK O PHE A 504 K K A 702 1555 1555 2.72 LINK OD1 ASP A 546 MG MG A 703 1555 1555 2.17 LINK OD1 ASN A 573 MG MG A 703 1555 1555 2.07 LINK O GLU A 575 MG MG A 703 1555 1555 2.05 LINK K K A 702 O HOH A 817 1555 1555 2.84 LINK K K A 702 O HOH A 884 1555 1555 2.92 LINK MG MG A 703 O2A TPP A 704 1555 1555 2.08 LINK MG MG A 703 O1B TPP A 704 1555 1555 2.01 LINK MG MG A 703 O HOH A 814 1555 1555 2.24 CISPEP 1 SER A 266 ASN A 267 0 0.02 CISPEP 2 LEU A 648 PRO A 649 0 2.12 SITE 1 AC1 32 ASP A 176 ARG A 237 GLY A 303 ALA A 304 SITE 2 AC1 32 GLY A 305 ASN A 308 THR A 330 LEU A 331 SITE 3 AC1 32 GLN A 332 LEU A 348 GLY A 349 MET A 350 SITE 4 AC1 32 HIS A 351 GLY A 370 ALA A 371 ARG A 372 SITE 5 AC1 32 ASP A 374 ARG A 376 VAL A 377 GLU A 403 SITE 6 AC1 32 ILE A 404 SER A 405 ASN A 408 GLY A 421 SITE 7 AC1 32 ASP A 422 VAL A 423 MET A 498 GLY A 516 SITE 8 AC1 32 GLY A 517 HOH A 819 HOH A 825 HOH A 841 SITE 1 AC2 6 GLN A 339 ASP A 346 GLN A 502 PHE A 504 SITE 2 AC2 6 HOH A 817 HOH A 884 SITE 1 AC3 5 ASP A 546 ASN A 573 GLU A 575 TPP A 704 SITE 2 AC3 5 HOH A 814 SITE 1 AC4 23 ALA A 110 GLU A 135 PRO A 161 ASN A 165 SITE 2 AC4 23 GLN A 198 VAL A 493 GLY A 494 GLN A 495 SITE 3 AC4 23 HIS A 496 GLY A 519 MET A 521 GLY A 545 SITE 4 AC4 23 ASP A 546 ALA A 547 SER A 548 ASN A 573 SITE 5 AC4 23 GLU A 575 GLN A 576 GLY A 577 MET A 578 SITE 6 AC4 23 VAL A 579 MG A 703 HOH A 814 CRYST1 176.039 176.039 177.626 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005681 0.003280 0.000000 0.00000 SCALE2 0.000000 0.006559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005630 0.00000