HEADER LIGASE 17-MAY-18 6DGI TITLE THE CRYSTAL STRUCTURE OF D-ALANYL-ALANINE SYNTHETASE A FROM VIBRIO TITLE 2 CHOLERAE O1 BIOVAR ELTOR STR. N16961 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE,D-ALANYLALANINE SYNTHETASE; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: DDL, VC_A0572; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG19C KEYWDS STRUCTURAL GENOMICS, THE CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,M.ZHOU,A.JOACHIMIAK,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 2 INFECTIOUS DISEASES (CSGID) REVDAT 2 18-DEC-19 6DGI 1 REMARK REVDAT 1 30-MAY-18 6DGI 0 JRNL AUTH K.TAN,M.ZHOU,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF D-ALANYL-ALANINE SYNTHETASE A FROM JRNL TITL 2 VIBRIO CHOLERAE O1 BIOVAR ELTOR STR. N16961 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.79 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 30054 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 1429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.7946 - 4.9531 0.94 2942 169 0.1582 0.2082 REMARK 3 2 4.9531 - 3.9323 0.97 2939 129 0.1380 0.1801 REMARK 3 3 3.9323 - 3.4354 0.97 2923 135 0.1624 0.1934 REMARK 3 4 3.4354 - 3.1214 0.97 2874 151 0.1904 0.2009 REMARK 3 5 3.1214 - 2.8977 0.98 2875 140 0.2027 0.2342 REMARK 3 6 2.8977 - 2.7269 0.98 2890 136 0.2112 0.2487 REMARK 3 7 2.7269 - 2.5904 0.98 2843 153 0.2075 0.2551 REMARK 3 8 2.5904 - 2.4776 0.97 2822 150 0.2101 0.2732 REMARK 3 9 2.4776 - 2.3822 0.95 2782 140 0.2092 0.2833 REMARK 3 10 2.3822 - 2.3000 0.93 2735 126 0.2037 0.2698 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.860 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5324 REMARK 3 ANGLE : 0.632 7221 REMARK 3 CHIRALITY : 0.044 803 REMARK 3 PLANARITY : 0.004 929 REMARK 3 DIHEDRAL : 6.717 4376 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.8614 2.3254 4.3186 REMARK 3 T TENSOR REMARK 3 T11: 0.4471 T22: 0.3348 REMARK 3 T33: 0.2117 T12: -0.1014 REMARK 3 T13: -0.1201 T23: 0.0639 REMARK 3 L TENSOR REMARK 3 L11: 1.4001 L22: 0.5803 REMARK 3 L33: 1.9540 L12: -0.5370 REMARK 3 L13: -0.3589 L23: 0.5121 REMARK 3 S TENSOR REMARK 3 S11: 0.0601 S12: 0.2581 S13: -0.0384 REMARK 3 S21: -0.4494 S22: 0.0371 S23: 0.2082 REMARK 3 S31: 0.1216 S32: -0.2973 S33: -0.0628 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 233 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2382 10.4748 31.7834 REMARK 3 T TENSOR REMARK 3 T11: 0.1378 T22: 0.1675 REMARK 3 T33: 0.3127 T12: -0.0255 REMARK 3 T13: -0.0166 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.8961 L22: 1.1326 REMARK 3 L33: 1.0045 L12: -0.0899 REMARK 3 L13: -0.2765 L23: -0.2099 REMARK 3 S TENSOR REMARK 3 S11: -0.0819 S12: -0.0876 S13: 0.0638 REMARK 3 S21: 0.0511 S22: 0.0799 S23: 0.1966 REMARK 3 S31: 0.0393 S32: -0.1077 S33: 0.0156 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 234 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2296 14.4064 20.0290 REMARK 3 T TENSOR REMARK 3 T11: 0.3458 T22: 0.5079 REMARK 3 T33: 0.6333 T12: 0.0611 REMARK 3 T13: 0.0533 T23: 0.1628 REMARK 3 L TENSOR REMARK 3 L11: 2.0574 L22: 7.0615 REMARK 3 L33: 0.4597 L12: 2.5383 REMARK 3 L13: -0.6647 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: -0.0489 S12: 0.3728 S13: 0.5195 REMARK 3 S21: -0.1686 S22: 0.1461 S23: 0.5457 REMARK 3 S31: 0.2362 S32: -0.2397 S33: 0.0458 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.3805 20.6404 15.8255 REMARK 3 T TENSOR REMARK 3 T11: 0.3141 T22: 0.2297 REMARK 3 T33: 0.3731 T12: -0.0099 REMARK 3 T13: -0.0944 T23: 0.1489 REMARK 3 L TENSOR REMARK 3 L11: 2.2759 L22: 2.1991 REMARK 3 L33: 2.5198 L12: -0.1951 REMARK 3 L13: -0.4770 L23: 0.7546 REMARK 3 S TENSOR REMARK 3 S11: 0.1423 S12: 0.2802 S13: 0.5342 REMARK 3 S21: -0.5980 S22: 0.1505 S23: 0.4055 REMARK 3 S31: -0.3381 S32: -0.2450 S33: -0.1865 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 64.6911 -2.0036 18.3063 REMARK 3 T TENSOR REMARK 3 T11: 0.2127 T22: 0.1905 REMARK 3 T33: 0.1364 T12: -0.0033 REMARK 3 T13: 0.0052 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.2225 L22: 1.2221 REMARK 3 L33: 1.9808 L12: 0.2214 REMARK 3 L13: 0.2040 L23: 0.3454 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: 0.2697 S13: -0.0239 REMARK 3 S21: -0.3167 S22: 0.0233 S23: -0.0255 REMARK 3 S31: 0.2212 S32: 0.0386 S33: -0.0104 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 156 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 76.3304 9.1534 29.7644 REMARK 3 T TENSOR REMARK 3 T11: 0.1859 T22: 0.2370 REMARK 3 T33: 0.2785 T12: -0.0363 REMARK 3 T13: -0.0358 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 0.9089 L22: 0.1401 REMARK 3 L33: 0.6783 L12: -0.1464 REMARK 3 L13: -0.2269 L23: -0.2427 REMARK 3 S TENSOR REMARK 3 S11: -0.0081 S12: 0.0237 S13: 0.1351 REMARK 3 S21: -0.0117 S22: -0.0622 S23: -0.2301 REMARK 3 S31: -0.0634 S32: 0.2228 S33: 0.0719 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 255 THROUGH 333 ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.6727 -4.0816 34.6198 REMARK 3 T TENSOR REMARK 3 T11: 0.1373 T22: 0.1156 REMARK 3 T33: 0.1393 T12: -0.0036 REMARK 3 T13: 0.0350 T23: 0.0434 REMARK 3 L TENSOR REMARK 3 L11: 1.8845 L22: 3.7740 REMARK 3 L33: 3.2579 L12: -0.1622 REMARK 3 L13: 0.8963 L23: 1.7090 REMARK 3 S TENSOR REMARK 3 S11: -0.0200 S12: 0.0231 S13: -0.0011 REMARK 3 S21: 0.0092 S22: 0.0052 S23: -0.0902 REMARK 3 S31: 0.2238 S32: 0.0548 S33: 0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DGI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234580. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97924 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 44.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.70000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMAT, 20% W/V REMARK 280 PEG3350, PH 5.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.79400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.58000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.43750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.58000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.79400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.43750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 63.58800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 333 REMARK 465 LYS A 334 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 ALA B 240 REMARK 465 ASN B 241 REMARK 465 SER B 242 REMARK 465 HIS B 243 REMARK 465 ALA B 244 REMARK 465 LYS B 334 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 36 CG CD OE1 OE2 REMARK 470 LYS A 46 CE NZ REMARK 470 LYS A 220 NZ REMARK 470 ASN A 241 CG OD1 ND2 REMARK 470 GLU A 251 CD OE1 OE2 REMARK 470 LYS B 46 CE NZ REMARK 470 GLU B 109 OE1 OE2 REMARK 470 LYS B 147 CE NZ REMARK 470 GLU B 185 CD OE1 OE2 REMARK 470 LYS B 201 CE NZ REMARK 470 SER B 239 OG REMARK 470 ARG B 245 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 287 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 167 -153.36 -115.18 REMARK 500 HIS A 276 -56.10 74.75 REMARK 500 SER A 278 146.45 -175.89 REMARK 500 ASN A 293 -66.17 -97.52 REMARK 500 VAL A 331 -65.58 -90.09 REMARK 500 SER B 167 -142.05 52.11 REMARK 500 MSE B 212 143.63 -174.61 REMARK 500 HIS B 276 -55.67 69.56 REMARK 500 SER B 278 148.71 -173.51 REMARK 500 ASN B 293 -61.13 -92.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 524 O REMARK 620 2 HOH A 535 O 101.7 REMARK 620 3 HOH A 501 O 81.5 91.0 REMARK 620 4 HOH A 506 O 69.1 167.8 79.9 REMARK 620 5 HOH A 521 O 78.5 106.3 155.8 80.4 REMARK 620 6 HOH B 557 O 159.1 97.1 89.2 90.9 105.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 563 O REMARK 620 2 HOH B 518 O 82.9 REMARK 620 3 HOH B 522 O 93.2 77.6 REMARK 620 4 HOH B 501 O 98.3 151.0 73.4 REMARK 620 5 HOH B 508 O 157.5 75.1 77.6 98.6 REMARK 620 6 HOH A 545 O 81.4 80.2 157.6 128.8 99.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP01488 RELATED DB: TARGETTRACK DBREF 6DGI A 1 334 UNP Q9KM17 DDL_VIBCH 1 334 DBREF 6DGI B 1 334 UNP Q9KM17 DDL_VIBCH 1 334 SEQADV 6DGI SER A -2 UNP Q9KM17 EXPRESSION TAG SEQADV 6DGI ASN A -1 UNP Q9KM17 EXPRESSION TAG SEQADV 6DGI ALA A 0 UNP Q9KM17 EXPRESSION TAG SEQADV 6DGI SER B -2 UNP Q9KM17 EXPRESSION TAG SEQADV 6DGI ASN B -1 UNP Q9KM17 EXPRESSION TAG SEQADV 6DGI ALA B 0 UNP Q9KM17 EXPRESSION TAG SEQRES 1 A 337 SER ASN ALA MSE THR LYS THR THR ILE LEU LEU LEU CYS SEQRES 2 A 337 GLY GLY GLY SER SER GLU HIS GLU ILE SER LEU VAL SER SEQRES 3 A 337 ALA ASN TYR ILE GLN GLN GLN LEU GLU LEU THR PRO GLU SEQRES 4 A 337 PHE HIS VAL ILE ARG VAL GLU MSE LYS LYS GLU GLY TRP SEQRES 5 A 337 PHE SER GLU GLN GLY ALA LEU VAL TYR LEU ASP THR ASN SEQRES 6 A 337 SER ALA THR LEU ASN SER ASP LYS ALA SER TYR PRO ILE SEQRES 7 A 337 ASP PHE VAL VAL PRO CYS ILE HIS GLY PHE PRO GLY GLU SEQRES 8 A 337 THR GLY ASP ILE GLN SER MSE LEU GLU LEU ALA GLY ILE SEQRES 9 A 337 PRO TYR LEU GLY CYS GLY PRO GLU ALA SER ALA ASN SER SEQRES 10 A 337 PHE ASN LYS ILE THR SER LYS LEU TRP TYR ASP ALA LEU SEQRES 11 A 337 ASP ILE PRO ASN THR PRO TYR LEU PHE LEU THR GLN ASN SEQRES 12 A 337 THR PRO SER SER ILE ASP LYS ALA LYS GLN ALA PHE GLY SEQRES 13 A 337 HIS TRP GLY SER ILE PHE VAL LYS ALA ALA ARG GLN GLY SEQRES 14 A 337 SER SER VAL GLY CYS TYR LYS VAL THR THR GLU ASP GLN SEQRES 15 A 337 ILE ALA PRO ALA ILE GLU ALA ALA PHE GLY PHE SER GLU SEQRES 16 A 337 GLN VAL LEU VAL GLU GLN ALA VAL LYS PRO ARG GLU LEU SEQRES 17 A 337 GLU VAL SER ALA TYR GLU MSE ASN GLY LYS LEU TYR ILE SEQRES 18 A 337 SER LYS PRO GLY GLU VAL ILE ALA PRO GLU GLY THR PHE SEQRES 19 A 337 TYR SER TYR GLU GLU LYS TYR SER ALA ASN SER HIS ALA SEQRES 20 A 337 ARG THR VAL LEU GLU ALA GLU ASN LEU THR GLU LYS HIS SEQRES 21 A 337 LYS GLU LEU ILE GLN THR TYR ALA GLU ARG VAL PHE ILE SEQRES 22 A 337 HIS MSE LYS LEU ARG HIS LEU SER ARG ILE ASP PHE PHE SEQRES 23 A 337 LEU THR GLN GLU GLY GLN ILE TYR LEU ASN GLU VAL ASN SEQRES 24 A 337 THR PHE PRO GLY MSE THR PRO ILE SER MSE PHE PRO LYS SEQRES 25 A 337 MSE LEU GLU HIS ASN GLY HIS ARG PHE SER GLU PHE LEU SEQRES 26 A 337 VAL GLN CYS VAL THR ASN THR LEU VAL ASN ALA LYS SEQRES 1 B 337 SER ASN ALA MSE THR LYS THR THR ILE LEU LEU LEU CYS SEQRES 2 B 337 GLY GLY GLY SER SER GLU HIS GLU ILE SER LEU VAL SER SEQRES 3 B 337 ALA ASN TYR ILE GLN GLN GLN LEU GLU LEU THR PRO GLU SEQRES 4 B 337 PHE HIS VAL ILE ARG VAL GLU MSE LYS LYS GLU GLY TRP SEQRES 5 B 337 PHE SER GLU GLN GLY ALA LEU VAL TYR LEU ASP THR ASN SEQRES 6 B 337 SER ALA THR LEU ASN SER ASP LYS ALA SER TYR PRO ILE SEQRES 7 B 337 ASP PHE VAL VAL PRO CYS ILE HIS GLY PHE PRO GLY GLU SEQRES 8 B 337 THR GLY ASP ILE GLN SER MSE LEU GLU LEU ALA GLY ILE SEQRES 9 B 337 PRO TYR LEU GLY CYS GLY PRO GLU ALA SER ALA ASN SER SEQRES 10 B 337 PHE ASN LYS ILE THR SER LYS LEU TRP TYR ASP ALA LEU SEQRES 11 B 337 ASP ILE PRO ASN THR PRO TYR LEU PHE LEU THR GLN ASN SEQRES 12 B 337 THR PRO SER SER ILE ASP LYS ALA LYS GLN ALA PHE GLY SEQRES 13 B 337 HIS TRP GLY SER ILE PHE VAL LYS ALA ALA ARG GLN GLY SEQRES 14 B 337 SER SER VAL GLY CYS TYR LYS VAL THR THR GLU ASP GLN SEQRES 15 B 337 ILE ALA PRO ALA ILE GLU ALA ALA PHE GLY PHE SER GLU SEQRES 16 B 337 GLN VAL LEU VAL GLU GLN ALA VAL LYS PRO ARG GLU LEU SEQRES 17 B 337 GLU VAL SER ALA TYR GLU MSE ASN GLY LYS LEU TYR ILE SEQRES 18 B 337 SER LYS PRO GLY GLU VAL ILE ALA PRO GLU GLY THR PHE SEQRES 19 B 337 TYR SER TYR GLU GLU LYS TYR SER ALA ASN SER HIS ALA SEQRES 20 B 337 ARG THR VAL LEU GLU ALA GLU ASN LEU THR GLU LYS HIS SEQRES 21 B 337 LYS GLU LEU ILE GLN THR TYR ALA GLU ARG VAL PHE ILE SEQRES 22 B 337 HIS MSE LYS LEU ARG HIS LEU SER ARG ILE ASP PHE PHE SEQRES 23 B 337 LEU THR GLN GLU GLY GLN ILE TYR LEU ASN GLU VAL ASN SEQRES 24 B 337 THR PHE PRO GLY MSE THR PRO ILE SER MSE PHE PRO LYS SEQRES 25 B 337 MSE LEU GLU HIS ASN GLY HIS ARG PHE SER GLU PHE LEU SEQRES 26 B 337 VAL GLN CYS VAL THR ASN THR LEU VAL ASN ALA LYS MODRES 6DGI MSE A 1 MET MODIFIED RESIDUE MODRES 6DGI MSE A 44 MET MODIFIED RESIDUE MODRES 6DGI MSE A 95 MET MODIFIED RESIDUE MODRES 6DGI MSE A 212 MET MODIFIED RESIDUE MODRES 6DGI MSE A 272 MET MODIFIED RESIDUE MODRES 6DGI MSE A 301 MET MODIFIED RESIDUE MODRES 6DGI MSE A 306 MET MODIFIED RESIDUE MODRES 6DGI MSE A 310 MET MODIFIED RESIDUE MODRES 6DGI MSE B 1 MET MODIFIED RESIDUE MODRES 6DGI MSE B 44 MET MODIFIED RESIDUE MODRES 6DGI MSE B 95 MET MODIFIED RESIDUE MODRES 6DGI MSE B 212 MET MODIFIED RESIDUE MODRES 6DGI MSE B 272 MET MODIFIED RESIDUE MODRES 6DGI MSE B 301 MET MODIFIED RESIDUE MODRES 6DGI MSE B 306 MET MODIFIED RESIDUE MODRES 6DGI MSE B 310 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 44 8 HET MSE A 95 8 HET MSE A 212 8 HET MSE A 272 8 HET MSE A 301 8 HET MSE A 306 8 HET MSE A 310 8 HET MSE B 1 8 HET MSE B 44 8 HET MSE B 95 8 HET MSE B 212 8 HET MSE B 272 8 HET MSE B 301 8 HET MSE B 306 8 HET MSE B 310 8 HET GOL A 401 6 HET ACT A 402 4 HET MG A 403 1 HET GOL B 401 6 HET MG B 402 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 3 GOL 2(C3 H8 O3) FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 MG 2(MG 2+) FORMUL 8 HOH *110(H2 O) HELIX 1 AA1 GLU A 16 GLU A 32 1 17 HELIX 2 AA2 GLY A 90 GLY A 100 1 11 HELIX 3 AA3 GLY A 107 ASN A 116 1 10 HELIX 4 AA4 ASN A 116 LEU A 127 1 12 HELIX 5 AA5 THR A 141 GLY A 156 1 16 HELIX 6 AA6 THR A 176 ASP A 178 5 3 HELIX 7 AA7 GLN A 179 GLY A 189 1 11 HELIX 8 AA8 SER A 233 SER A 239 5 7 HELIX 9 AA9 THR A 254 MSE A 272 1 19 HELIX 10 AB1 SER A 305 ASN A 314 1 10 HELIX 11 AB2 ARG A 317 ASN A 332 1 16 HELIX 12 AB3 GLU B 16 GLU B 32 1 17 HELIX 13 AB4 GLY B 90 GLY B 100 1 11 HELIX 14 AB5 GLY B 107 ASN B 116 1 10 HELIX 15 AB6 ASN B 116 LEU B 127 1 12 HELIX 16 AB7 THR B 141 GLY B 156 1 16 HELIX 17 AB8 THR B 176 ASP B 178 5 3 HELIX 18 AB9 GLN B 179 PHE B 188 1 10 HELIX 19 AC1 GLU B 228 TYR B 232 5 5 HELIX 20 AC2 THR B 254 MSE B 272 1 19 HELIX 21 AC3 SER B 305 ASN B 314 1 10 HELIX 22 AC4 ARG B 317 ASN B 332 1 16 SHEET 1 AA1 7 SER A 72 PRO A 74 0 SHEET 2 AA1 7 THR A 65 ASN A 67 -1 N LEU A 66 O TYR A 73 SHEET 3 AA1 7 LEU A 56 ASP A 60 -1 N ASP A 60 O THR A 65 SHEET 4 AA1 7 GLY A 48 SER A 51 -1 N TRP A 49 O VAL A 57 SHEET 5 AA1 7 PHE A 37 LYS A 45 -1 N GLU A 43 O PHE A 50 SHEET 6 AA1 7 THR A 4 GLY A 11 1 N LEU A 8 O ILE A 40 SHEET 7 AA1 7 PHE A 77 CYS A 81 1 O PHE A 77 N LEU A 7 SHEET 1 AA2 4 TYR A 134 LEU A 137 0 SHEET 2 AA2 4 VAL A 194 GLN A 198 -1 O VAL A 196 N LEU A 135 SHEET 3 AA2 4 ILE A 158 ALA A 162 -1 N LYS A 161 O LEU A 195 SHEET 4 AA2 4 CYS A 171 VAL A 174 -1 O TYR A 172 N VAL A 160 SHEET 1 AA3 4 LYS A 215 ILE A 218 0 SHEET 2 AA3 4 ARG A 203 MSE A 212 -1 N MSE A 212 O LYS A 215 SHEET 3 AA3 4 GLY A 222 ILE A 225 -1 O GLY A 222 N GLU A 206 SHEET 4 AA3 4 ARG A 245 VAL A 247 -1 O VAL A 247 N GLU A 223 SHEET 1 AA4 4 LYS A 215 ILE A 218 0 SHEET 2 AA4 4 ARG A 203 MSE A 212 -1 N MSE A 212 O LYS A 215 SHEET 3 AA4 4 LEU A 277 LEU A 284 -1 O PHE A 282 N LEU A 205 SHEET 4 AA4 4 ILE A 290 ASN A 296 -1 O ASN A 296 N ARG A 279 SHEET 1 AA5 7 SER B 72 PRO B 74 0 SHEET 2 AA5 7 THR B 65 ASN B 67 -1 N LEU B 66 O TYR B 73 SHEET 3 AA5 7 LEU B 56 ASP B 60 -1 N TYR B 58 O ASN B 67 SHEET 4 AA5 7 GLY B 48 SER B 51 -1 N TRP B 49 O VAL B 57 SHEET 5 AA5 7 PHE B 37 LYS B 45 -1 N LYS B 45 O GLY B 48 SHEET 6 AA5 7 THR B 4 GLY B 11 1 N LEU B 8 O ILE B 40 SHEET 7 AA5 7 PHE B 77 CYS B 81 1 O PHE B 77 N LEU B 7 SHEET 1 AA6 4 TYR B 134 LEU B 137 0 SHEET 2 AA6 4 VAL B 194 GLN B 198 -1 O VAL B 196 N LEU B 135 SHEET 3 AA6 4 ILE B 158 ALA B 162 -1 N LYS B 161 O LEU B 195 SHEET 4 AA6 4 CYS B 171 VAL B 174 -1 O VAL B 174 N ILE B 158 SHEET 1 AA7 4 LYS B 215 ILE B 218 0 SHEET 2 AA7 4 ARG B 203 MSE B 212 -1 N TYR B 210 O TYR B 217 SHEET 3 AA7 4 GLY B 222 VAL B 224 -1 O GLY B 222 N GLU B 206 SHEET 4 AA7 4 THR B 246 VAL B 247 -1 O VAL B 247 N GLU B 223 SHEET 1 AA8 4 LYS B 215 ILE B 218 0 SHEET 2 AA8 4 ARG B 203 MSE B 212 -1 N TYR B 210 O TYR B 217 SHEET 3 AA8 4 LEU B 277 LEU B 284 -1 O PHE B 282 N LEU B 205 SHEET 4 AA8 4 ILE B 290 ASN B 296 -1 O ASN B 296 N ARG B 279 LINK C ALA A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N THR A 2 1555 1555 1.33 LINK C GLU A 43 N MSE A 44 1555 1555 1.33 LINK C MSE A 44 N LYS A 45 1555 1555 1.33 LINK C SER A 94 N MSE A 95 1555 1555 1.33 LINK C MSE A 95 N LEU A 96 1555 1555 1.34 LINK C GLU A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N ASN A 213 1555 1555 1.34 LINK C HIS A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N LYS A 273 1555 1555 1.33 LINK C GLY A 300 N MSE A 301 1555 1555 1.33 LINK C MSE A 301 N THR A 302 1555 1555 1.33 LINK C SER A 305 N MSE A 306 1555 1555 1.33 LINK C MSE A 306 N PHE A 307 1555 1555 1.33 LINK C LYS A 309 N MSE A 310 1555 1555 1.33 LINK C MSE A 310 N LEU A 311 1555 1555 1.33 LINK C MSE B 1 N THR B 2 1555 1555 1.33 LINK C GLU B 43 N MSE B 44 1555 1555 1.33 LINK C MSE B 44 N LYS B 45 1555 1555 1.33 LINK C SER B 94 N MSE B 95 1555 1555 1.33 LINK C MSE B 95 N LEU B 96 1555 1555 1.34 LINK C GLU B 211 N MSE B 212 1555 1555 1.33 LINK C MSE B 212 N ASN B 213 1555 1555 1.34 LINK C HIS B 271 N MSE B 272 1555 1555 1.32 LINK C MSE B 272 N LYS B 273 1555 1555 1.34 LINK C GLY B 300 N MSE B 301 1555 1555 1.33 LINK C MSE B 301 N THR B 302 1555 1555 1.33 LINK C SER B 305 N MSE B 306 1555 1555 1.33 LINK C MSE B 306 N PHE B 307 1555 1555 1.34 LINK C LYS B 309 N MSE B 310 1555 1555 1.33 LINK C MSE B 310 N LEU B 311 1555 1555 1.33 LINK MG MG A 403 O HOH A 524 1555 1555 2.19 LINK MG MG A 403 O HOH A 535 1555 1555 2.17 LINK MG MG A 403 O HOH A 501 1555 1555 2.23 LINK MG MG A 403 O HOH A 506 1555 1555 2.19 LINK MG MG A 403 O HOH A 521 1555 1555 2.13 LINK MG MG B 402 O HOH B 563 1555 1555 2.13 LINK MG MG B 402 O HOH B 518 1555 1555 1.95 LINK MG MG B 402 O HOH B 522 1555 1555 2.43 LINK MG MG B 402 O HOH B 501 1555 1555 2.25 LINK MG MG B 402 O HOH B 508 1555 1555 2.02 LINK MG MG A 403 O HOH B 557 1555 1455 2.11 LINK MG MG B 402 O HOH A 545 1555 1655 2.17 CISPEP 1 PHE A 85 PRO A 86 0 0.56 CISPEP 2 PHE B 85 PRO B 86 0 -3.18 SITE 1 AC1 7 GLY A 90 SER A 94 PRO A 108 ALA A 112 SITE 2 AC1 7 THR B 89 SER B 94 PRO B 108 SITE 1 AC2 4 GLU A 16 GLU A 88 GLY A 166 ASN A 296 SITE 1 AC3 6 HOH A 501 HOH A 506 HOH A 521 HOH A 524 SITE 2 AC3 6 HOH A 535 HOH B 557 SITE 1 AC4 6 GLU B 16 GLY B 84 GLU B 88 SER B 167 SITE 2 AC4 6 ASN B 296 HOH B 529 SITE 1 AC5 6 HOH A 545 HOH B 501 HOH B 508 HOH B 518 SITE 2 AC5 6 HOH B 522 HOH B 563 CRYST1 63.588 64.875 165.160 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015726 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015414 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006055 0.00000