HEADER OXIDOREDUCTASE 18-MAY-18 6DGS TITLE CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DIHYDROOROTATE DEHYDROGENASE TITLE 2 MUTANT Y142A COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROOROTATE DEHYDROGENASE (FUMARATE); COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DIHYDROOROTATE OXIDASE; COMPND 5 EC: 1.3.98.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 GENE: DHODH, LMJF_16_0530; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS DIHYDROOROTATE DEHYDROGENASE LEISHMANIA MAJOR MUTANT Y142A, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.A.G.REIS,M.P.PINHEIRO,M.C.NONATO REVDAT 3 11-OCT-23 6DGS 1 REMARK REVDAT 2 01-JAN-20 6DGS 1 REMARK REVDAT 1 29-MAY-19 6DGS 0 JRNL AUTH R.A.G.REIS,M.P.PINHEIRO,M.C.NONATO JRNL TITL CRYSTAL STRUCTURE OF LEISHMANIA MAJOR DIHYDROOROTATE JRNL TITL 2 DEHYDROGENASE MUTANT Y142A JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 121.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73474 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3856 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5440 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 260 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4604 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.090 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.172 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4945 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6713 ; 1.503 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 636 ; 6.185 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 210 ;39.828 ;24.381 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;13.595 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;12.371 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3771 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234192. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.45868 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77370 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 121.807 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.65700 REMARK 200 R SYM FOR SHELL (I) : 0.65700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.5.05 REMARK 200 STARTING MODEL: 3GYE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CITRATE TRIBASIC DIHYDRATE REMARK 280 PH 5.6, 1.1M LITHIUM SULFATE, 0.45M AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.66700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.33400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.00050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 56.66750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.33350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -33 REMARK 465 GLY A -32 REMARK 465 SER A -31 REMARK 465 SER A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 HIS A -24 REMARK 465 SER A -23 REMARK 465 SER A -22 REMARK 465 GLY A -21 REMARK 465 LEU A -20 REMARK 465 VAL A -19 REMARK 465 PRO A -18 REMARK 465 ALA A -17 REMARK 465 GLY A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 MET A -13 REMARK 465 ALA A -12 REMARK 465 SER A -11 REMARK 465 MET A -10 REMARK 465 THR A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLN A -6 REMARK 465 GLN A -5 REMARK 465 MET A -4 REMARK 465 GLY A -3 REMARK 465 ARG A -2 REMARK 465 CYS A 131 REMARK 465 PRO A 132 REMARK 465 ASN A 133 REMARK 465 VAL A 134 REMARK 465 PRO A 135 REMARK 465 GLY A 136 REMARK 465 LYS A 137 REMARK 465 PRO A 138 REMARK 465 GLN A 139 REMARK 465 VAL A 140 REMARK 465 ALA A 141 REMARK 465 ALA A 142 REMARK 465 GLY A 314 REMARK 465 THR A 315 REMARK 465 ALA A 316 REMARK 465 GLU A 317 REMARK 465 SER A 318 REMARK 465 THR A 319 REMARK 465 ARG A 320 REMARK 465 MET B -33 REMARK 465 GLY B -32 REMARK 465 SER B -31 REMARK 465 SER B -30 REMARK 465 HIS B -29 REMARK 465 HIS B -28 REMARK 465 HIS B -27 REMARK 465 HIS B -26 REMARK 465 HIS B -25 REMARK 465 HIS B -24 REMARK 465 SER B -23 REMARK 465 SER B -22 REMARK 465 GLY B -21 REMARK 465 LEU B -20 REMARK 465 VAL B -19 REMARK 465 PRO B -18 REMARK 465 ALA B -17 REMARK 465 GLY B -16 REMARK 465 SER B -15 REMARK 465 HIS B -14 REMARK 465 MET B -13 REMARK 465 ALA B -12 REMARK 465 SER B -11 REMARK 465 MET B -10 REMARK 465 THR B -9 REMARK 465 GLY B -8 REMARK 465 GLY B -7 REMARK 465 GLN B -6 REMARK 465 GLN B -5 REMARK 465 MET B -4 REMARK 465 GLY B -3 REMARK 465 ARG B -2 REMARK 465 CYS B 131 REMARK 465 PRO B 132 REMARK 465 ASN B 133 REMARK 465 VAL B 134 REMARK 465 PRO B 135 REMARK 465 GLY B 136 REMARK 465 LYS B 137 REMARK 465 PRO B 138 REMARK 465 GLN B 139 REMARK 465 VAL B 140 REMARK 465 ALA B 141 REMARK 465 ALA B 142 REMARK 465 GLY B 314 REMARK 465 THR B 315 REMARK 465 ALA B 316 REMARK 465 GLU B 317 REMARK 465 SER B 318 REMARK 465 THR B 319 REMARK 465 ARG B 320 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 651 O HOH A 707 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 24 27.36 -155.69 REMARK 500 CYS A 24 27.36 -155.05 REMARK 500 PRO A 159 41.71 -87.90 REMARK 500 CYS B 24 26.61 -153.84 REMARK 500 CYS B 24 26.61 -154.47 REMARK 500 PRO B 159 44.11 -88.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3TRO RELATED DB: PDB REMARK 900 MUTANT D171A REMARK 900 RELATED ID: 3TJX RELATED DB: PDB REMARK 900 MUTANT H174A DBREF 6DGS A 1 320 UNP Q4QEW7 Q4QEW7_LEIMA 1 320 DBREF 6DGS B 1 320 UNP Q4QEW7 Q4QEW7_LEIMA 1 320 SEQADV 6DGS MET A -33 UNP Q4QEW7 INITIATING METHIONINE SEQADV 6DGS GLY A -32 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -31 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -30 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -29 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -28 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -27 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -26 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -25 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -24 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -23 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -22 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -21 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS LEU A -20 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS VAL A -19 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS PRO A -18 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA A -17 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -16 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -15 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS A -14 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET A -13 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA A -12 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A -11 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET A -10 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS THR A -9 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -8 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -7 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLN A -6 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLN A -5 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET A -4 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -3 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ARG A -2 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY A -1 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER A 0 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA A 142 UNP Q4QEW7 TYR 142 ENGINEERED MUTATION SEQADV 6DGS MET B -33 UNP Q4QEW7 INITIATING METHIONINE SEQADV 6DGS GLY B -32 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -31 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -30 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -29 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -28 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -27 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -26 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -25 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -24 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -23 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -22 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -21 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS LEU B -20 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS VAL B -19 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS PRO B -18 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA B -17 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -16 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -15 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS HIS B -14 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET B -13 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA B -12 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B -11 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET B -10 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS THR B -9 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -8 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -7 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLN B -6 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLN B -5 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS MET B -4 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -3 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ARG B -2 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS GLY B -1 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS SER B 0 UNP Q4QEW7 EXPRESSION TAG SEQADV 6DGS ALA B 142 UNP Q4QEW7 TYR 142 ENGINEERED MUTATION SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ALA GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 354 GLY GLN GLN MET GLY ARG GLY SER MET SER LEU GLN VAL SEQRES 4 A 354 ASN LEU LEU ASN ASN THR PHE ALA ASN PRO PHE MET ASN SEQRES 5 A 354 ALA ALA GLY VAL MET CYS THR THR THR GLU GLU LEU VAL SEQRES 6 A 354 ALA MET THR GLU SER ALA SER GLY SER LEU VAL SER LYS SEQRES 7 A 354 SER CYS THR PRO ALA LEU ARG GLU GLY ASN PRO THR PRO SEQRES 8 A 354 ARG TYR GLN ALA LEU PRO LEU GLY SER ILE ASN SER MET SEQRES 9 A 354 GLY LEU PRO ASN ASN GLY PHE ASP PHE TYR LEU ALA TYR SEQRES 10 A 354 ALA ALA GLU GLN HIS ASP TYR GLY LYS LYS PRO LEU PHE SEQRES 11 A 354 LEU SER MET SER GLY LEU SER MET ARG GLU ASN VAL GLU SEQRES 12 A 354 MET CYS LYS ARG LEU ALA ALA VAL ALA THR GLU LYS GLY SEQRES 13 A 354 VAL ILE LEU GLU LEU ASN LEU SER CYS PRO ASN VAL PRO SEQRES 14 A 354 GLY LYS PRO GLN VAL ALA ALA ASP PHE ASP ALA MET ARG SEQRES 15 A 354 GLN CSX LEU THR ALA VAL SER GLU VAL TYR PRO HIS SER SEQRES 16 A 354 PHE GLY VAL LYS MET PRO PRO TYR PHE ASP PHE ALA HIS SEQRES 17 A 354 PHE ASP ALA ALA ALA GLU ILE LEU ASN GLU PHE PRO LYS SEQRES 18 A 354 VAL GLN PHE ILE THR CYS ILE ASN SER ILE GLY ASN GLY SEQRES 19 A 354 LEU VAL ILE ASP ALA GLU THR GLU SER VAL VAL ILE LYS SEQRES 20 A 354 PRO LYS GLN GLY PHE GLY GLY LEU GLY GLY ARG TYR VAL SEQRES 21 A 354 LEU PRO THR ALA LEU ALA ASN ILE ASN ALA PHE TYR ARG SEQRES 22 A 354 ARG CYS PRO GLY LYS LEU ILE PHE GLY CYS GLY GLY VAL SEQRES 23 A 354 TYR THR GLY GLU ASP ALA PHE LEU HIS VAL LEU ALA GLY SEQRES 24 A 354 ALA SER MET VAL GLN VAL GLY THR ALA LEU GLN GLU GLU SEQRES 25 A 354 GLY PRO SER ILE PHE GLU ARG LEU THR SER GLU LEU LEU SEQRES 26 A 354 GLY VAL MET ALA LYS LYS ARG TYR GLN THR LEU ASP GLU SEQRES 27 A 354 PHE ARG GLY LYS VAL ARG THR LEU ASP GLY THR ALA GLU SEQRES 28 A 354 SER THR ARG SEQRES 1 B 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 354 LEU VAL PRO ALA GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 B 354 GLY GLN GLN MET GLY ARG GLY SER MET SER LEU GLN VAL SEQRES 4 B 354 ASN LEU LEU ASN ASN THR PHE ALA ASN PRO PHE MET ASN SEQRES 5 B 354 ALA ALA GLY VAL MET CYS THR THR THR GLU GLU LEU VAL SEQRES 6 B 354 ALA MET THR GLU SER ALA SER GLY SER LEU VAL SER LYS SEQRES 7 B 354 SER CYS THR PRO ALA LEU ARG GLU GLY ASN PRO THR PRO SEQRES 8 B 354 ARG TYR GLN ALA LEU PRO LEU GLY SER ILE ASN SER MET SEQRES 9 B 354 GLY LEU PRO ASN ASN GLY PHE ASP PHE TYR LEU ALA TYR SEQRES 10 B 354 ALA ALA GLU GLN HIS ASP TYR GLY LYS LYS PRO LEU PHE SEQRES 11 B 354 LEU SER MET SER GLY LEU SER MET ARG GLU ASN VAL GLU SEQRES 12 B 354 MET CYS LYS ARG LEU ALA ALA VAL ALA THR GLU LYS GLY SEQRES 13 B 354 VAL ILE LEU GLU LEU ASN LEU SER CYS PRO ASN VAL PRO SEQRES 14 B 354 GLY LYS PRO GLN VAL ALA ALA ASP PHE ASP ALA MET ARG SEQRES 15 B 354 GLN CSX LEU THR ALA VAL SER GLU VAL TYR PRO HIS SER SEQRES 16 B 354 PHE GLY VAL LYS MET PRO PRO TYR PHE ASP PHE ALA HIS SEQRES 17 B 354 PHE ASP ALA ALA ALA GLU ILE LEU ASN GLU PHE PRO LYS SEQRES 18 B 354 VAL GLN PHE ILE THR CYS ILE ASN SER ILE GLY ASN GLY SEQRES 19 B 354 LEU VAL ILE ASP ALA GLU THR GLU SER VAL VAL ILE LYS SEQRES 20 B 354 PRO LYS GLN GLY PHE GLY GLY LEU GLY GLY ARG TYR VAL SEQRES 21 B 354 LEU PRO THR ALA LEU ALA ASN ILE ASN ALA PHE TYR ARG SEQRES 22 B 354 ARG CYS PRO GLY LYS LEU ILE PHE GLY CYS GLY GLY VAL SEQRES 23 B 354 TYR THR GLY GLU ASP ALA PHE LEU HIS VAL LEU ALA GLY SEQRES 24 B 354 ALA SER MET VAL GLN VAL GLY THR ALA LEU GLN GLU GLU SEQRES 25 B 354 GLY PRO SER ILE PHE GLU ARG LEU THR SER GLU LEU LEU SEQRES 26 B 354 GLY VAL MET ALA LYS LYS ARG TYR GLN THR LEU ASP GLU SEQRES 27 B 354 PHE ARG GLY LYS VAL ARG THR LEU ASP GLY THR ALA GLU SEQRES 28 B 354 SER THR ARG MODRES 6DGS CSX A 150 CYS MODIFIED RESIDUE MODRES 6DGS CSX B 150 CYS MODIFIED RESIDUE HET CSX A 150 7 HET CSX B 150 7 HET FMN A 401 31 HET GOL A 402 6 HET SO4 A 403 5 HET FMN B 401 31 HET GOL B 402 6 HET SO4 B 403 5 HETNAM CSX S-OXY CYSTEINE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *473(H2 O) HELIX 1 AA1 THR A 26 SER A 36 1 11 HELIX 2 AA2 GLY A 76 GLN A 87 1 12 HELIX 3 AA3 SER A 103 GLY A 122 1 20 HELIX 4 AA4 PHE A 144 TYR A 158 1 15 HELIX 5 AA5 ASP A 171 GLU A 184 1 14 HELIX 6 AA6 LYS A 213 GLN A 216 5 4 HELIX 7 AA7 GLY A 223 TYR A 225 5 3 HELIX 8 AA8 VAL A 226 CYS A 241 1 16 HELIX 9 AA9 THR A 254 GLY A 265 1 12 HELIX 10 AB1 GLY A 272 GLY A 279 1 8 HELIX 11 AB2 SER A 281 LYS A 297 1 17 HELIX 12 AB3 THR A 301 PHE A 305 5 5 HELIX 13 AB4 THR B 26 SER B 36 1 11 HELIX 14 AB5 GLY B 76 GLN B 87 1 12 HELIX 15 AB6 SER B 103 GLY B 122 1 20 HELIX 16 AB7 PHE B 144 TYR B 158 1 15 HELIX 17 AB8 ASP B 171 GLU B 184 1 14 HELIX 18 AB9 LYS B 213 GLN B 216 5 4 HELIX 19 AC1 GLY B 223 TYR B 225 5 3 HELIX 20 AC2 VAL B 226 CYS B 241 1 16 HELIX 21 AC3 THR B 254 GLY B 265 1 12 HELIX 22 AC4 GLY B 272 GLY B 279 1 8 HELIX 23 AC5 SER B 281 LYS B 297 1 17 HELIX 24 AC6 THR B 301 PHE B 305 5 5 SHEET 1 AA1 2 VAL A 5 LEU A 7 0 SHEET 2 AA1 2 ASN A 10 PHE A 12 -1 O PHE A 12 N VAL A 5 SHEET 1 AA2 8 PHE A 16 ASN A 18 0 SHEET 2 AA2 8 ALA A 266 VAL A 271 1 O VAL A 271 N MET A 17 SHEET 3 AA2 8 LEU A 245 CYS A 249 1 N GLY A 248 O GLN A 270 SHEET 4 AA2 8 VAL A 188 CYS A 193 1 N ILE A 191 O PHE A 247 SHEET 5 AA2 8 PHE A 162 MET A 166 1 N VAL A 164 O THR A 192 SHEET 6 AA2 8 ILE A 124 ASN A 128 1 N LEU A 127 O GLY A 163 SHEET 7 AA2 8 LEU A 95 MET A 99 1 N MET A 99 O ASN A 128 SHEET 8 AA2 8 LEU A 41 CYS A 46 1 N LEU A 41 O PHE A 96 SHEET 1 AA3 4 TYR A 59 LEU A 62 0 SHEET 2 AA3 4 GLY A 65 ASN A 68 -1 O GLY A 65 N LEU A 62 SHEET 3 AA3 4 PHE A 218 GLY A 222 -1 O GLY A 220 N ASN A 68 SHEET 4 AA3 4 ILE A 197 LEU A 201 -1 N ILE A 197 O LEU A 221 SHEET 1 AA4 2 ILE A 203 ASP A 204 0 SHEET 2 AA4 2 SER A 209 VAL A 210 -1 O SER A 209 N ASP A 204 SHEET 1 AA5 2 VAL B 5 LEU B 7 0 SHEET 2 AA5 2 ASN B 10 PHE B 12 -1 O PHE B 12 N VAL B 5 SHEET 1 AA6 8 PHE B 16 ASN B 18 0 SHEET 2 AA6 8 ALA B 266 VAL B 271 1 O VAL B 271 N MET B 17 SHEET 3 AA6 8 LEU B 245 CYS B 249 1 N ILE B 246 O SER B 267 SHEET 4 AA6 8 VAL B 188 CYS B 193 1 N ILE B 191 O PHE B 247 SHEET 5 AA6 8 PHE B 162 MET B 166 1 N VAL B 164 O THR B 192 SHEET 6 AA6 8 ILE B 124 ASN B 128 1 N LEU B 127 O GLY B 163 SHEET 7 AA6 8 LEU B 95 MET B 99 1 N MET B 99 O ASN B 128 SHEET 8 AA6 8 LEU B 41 CYS B 46 1 N LEU B 41 O PHE B 96 SHEET 1 AA7 4 TYR B 59 LEU B 62 0 SHEET 2 AA7 4 GLY B 65 ASN B 68 -1 O GLY B 65 N LEU B 62 SHEET 3 AA7 4 PHE B 218 GLY B 222 -1 O GLY B 220 N ASN B 68 SHEET 4 AA7 4 ILE B 197 LEU B 201 -1 N ILE B 197 O LEU B 221 SHEET 1 AA8 2 ILE B 203 ASP B 204 0 SHEET 2 AA8 2 SER B 209 VAL B 210 -1 O SER B 209 N ASP B 204 LINK C GLN A 149 N CSX A 150 1555 1555 1.33 LINK C CSX A 150 N LEU A 151 1555 1555 1.33 LINK C GLN B 149 N CSX B 150 1555 1555 1.33 LINK C CSX B 150 N LEU B 151 1555 1555 1.33 CISPEP 1 THR A 56 PRO A 57 0 -0.90 CISPEP 2 CYS A 193 ILE A 194 0 13.89 CISPEP 3 THR B 56 PRO B 57 0 2.36 CISPEP 4 CYS B 193 ILE B 194 0 14.92 SITE 1 AC1 25 ALA A 19 ALA A 20 GLY A 21 VAL A 22 SITE 2 AC1 25 LYS A 44 SER A 45 ASN A 68 MET A 70 SITE 3 AC1 25 ASN A 128 LYS A 165 ILE A 194 ASN A 195 SITE 4 AC1 25 SER A 196 GLY A 222 GLY A 223 VAL A 226 SITE 5 AC1 25 CYS A 249 GLY A 250 GLY A 251 GLY A 272 SITE 6 AC1 25 THR A 273 HOH A 525 HOH A 535 HOH A 542 SITE 7 AC1 25 HOH A 592 SITE 1 AC2 7 VAL A 202 ILE A 203 SO4 A 403 HOH A 511 SITE 2 AC2 7 LEU B 227 LEU B 231 HOH B 573 SITE 1 AC3 7 PRO A 63 VAL A 202 ILE A 203 ASP A 204 SITE 2 AC3 7 ARG A 298 GOL A 402 HOH A 590 SITE 1 AC4 24 ALA B 19 ALA B 20 GLY B 21 LYS B 44 SITE 2 AC4 24 SER B 45 ASN B 68 MET B 70 ASN B 128 SITE 3 AC4 24 LYS B 165 ILE B 194 ASN B 195 SER B 196 SITE 4 AC4 24 GLY B 222 GLY B 223 VAL B 226 CYS B 249 SITE 5 AC4 24 GLY B 250 GLY B 251 GLY B 272 THR B 273 SITE 6 AC4 24 HOH B 507 HOH B 511 HOH B 542 HOH B 600 SITE 1 AC5 7 LEU A 227 LEU A 231 VAL B 202 ILE B 203 SITE 2 AC5 7 SO4 B 403 HOH B 517 HOH B 580 SITE 1 AC6 6 LEU B 62 PRO B 63 ASP B 204 VAL B 211 SITE 2 AC6 6 ARG B 298 GOL B 402 CRYST1 140.651 140.651 68.001 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007110 0.004105 0.000000 0.00000 SCALE2 0.000000 0.008210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014706 0.00000