HEADER HYDROLASE 22-MAY-18 6DI7 TITLE VPS1 GTPASE-BSE FUSION COMPLEXED WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE SORTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-358; COMPND 5 SYNONYM: VPS1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHAETOMIUM THERMOPHILUM; SOURCE 3 ORGANISM_TAXID: 759272; SOURCE 4 STRAIN: DSM 1495 / CBS 144.50 / IMI 039719; SOURCE 5 VARIANT: THERMOPHILUM DSM 1495; SOURCE 6 GENE: CTHT_0061810; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS VPS1, VACUOLAR PROTEIN SORTING 1, GDP, DYNAMIN-RELATED PROTEIN, DRP, KEYWDS 2 DYNAMIN, VACUOLE, ENDOSOME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.V.VARLAKHANOVA,T.M.BRADY,M.G.J.FORD REVDAT 4 11-OCT-23 6DI7 1 REMARK REVDAT 3 01-JAN-20 6DI7 1 REMARK REVDAT 2 17-OCT-18 6DI7 1 JRNL REVDAT 1 22-AUG-18 6DI7 0 JRNL AUTH N.V.VARLAKHANOVA,F.J.D.ALVAREZ,T.M.BRADY,B.A.TORNABENE, JRNL AUTH 2 C.J.HOSFORD,J.S.CHAPPIE,P.ZHANG,M.G.J.FORD JRNL TITL STRUCTURES OF THE FUNGAL DYNAMIN-RELATED PROTEIN VPS1 REVEAL JRNL TITL 2 A UNIQUE, OPEN HELICAL ARCHITECTURE. JRNL REF J. CELL BIOL. V. 217 3608 2018 JRNL REFN ESSN 1540-8140 JRNL PMID 30087125 JRNL DOI 10.1083/JCB.201712021 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17234 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.9063 - 4.1789 1.00 2876 140 0.1612 0.1419 REMARK 3 2 4.1789 - 3.3171 1.00 2735 144 0.1600 0.2124 REMARK 3 3 3.3171 - 2.8978 1.00 2733 131 0.2026 0.2279 REMARK 3 4 2.8978 - 2.6329 1.00 2698 136 0.2084 0.2499 REMARK 3 5 2.6329 - 2.4442 1.00 2695 135 0.2028 0.2798 REMARK 3 6 2.4442 - 2.3001 1.00 2677 134 0.2018 0.2446 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2236 REMARK 3 ANGLE : 0.532 3041 REMARK 3 CHIRALITY : 0.043 355 REMARK 3 PLANARITY : 0.003 411 REMARK 3 DIHEDRAL : 10.903 1387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 153 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.8047 15.7729 115.4237 REMARK 3 T TENSOR REMARK 3 T11: 0.6024 T22: 0.3893 REMARK 3 T33: 0.3929 T12: -0.0441 REMARK 3 T13: -0.0803 T23: 0.1086 REMARK 3 L TENSOR REMARK 3 L11: 3.5935 L22: 2.5829 REMARK 3 L33: 5.8315 L12: -0.8005 REMARK 3 L13: 1.6549 L23: -2.2713 REMARK 3 S TENSOR REMARK 3 S11: 0.1662 S12: -0.5516 S13: -0.4290 REMARK 3 S21: 0.4101 S22: -0.0615 S23: -0.1298 REMARK 3 S31: 0.7331 S32: -0.1502 S33: -0.0825 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 327 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5371 29.8114 104.0245 REMARK 3 T TENSOR REMARK 3 T11: 0.3084 T22: 0.2085 REMARK 3 T33: 0.2696 T12: 0.0010 REMARK 3 T13: -0.0511 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.3941 L22: 1.9083 REMARK 3 L33: 1.8495 L12: 0.2734 REMARK 3 L13: 0.2143 L23: 0.4719 REMARK 3 S TENSOR REMARK 3 S11: 0.1130 S12: -0.1887 S13: -0.0300 REMARK 3 S21: 0.2778 S22: -0.0728 S23: -0.0675 REMARK 3 S31: 0.0931 S32: 0.0071 S33: -0.0064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DI7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-18. REMARK 100 THE DEPOSITION ID IS D_1000234670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.2.1 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.14 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17235 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 49.895 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.10 REMARK 200 R MERGE FOR SHELL (I) : 0.74000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.6 REMARK 200 STARTING MODEL: PDB ENTRY 2X2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14-19% PEG4000, 0.07-0.1 M TRISODIUM REMARK 280 CITRATE, 20% ISOPROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 42.48950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 24.53132 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 90.50067 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 42.48950 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 24.53132 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 90.50067 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 42.48950 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 24.53132 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 90.50067 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 42.48950 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 24.53132 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 90.50067 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 42.48950 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 24.53132 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 90.50067 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 42.48950 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 24.53132 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 90.50067 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.06265 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 181.00133 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 49.06265 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 181.00133 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 49.06265 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 181.00133 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 49.06265 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 181.00133 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 49.06265 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 181.00133 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 49.06265 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 181.00133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1121 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1185 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 ALA A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 ILE A 16 REMARK 465 SER A 17 REMARK 465 ASP A 18 REMARK 465 PRO A 19 REMARK 465 ASN A 20 REMARK 465 LEU A 21 REMARK 465 ILE A 22 REMARK 465 LYS A 23 REMARK 465 LEU A 24 REMARK 465 VAL A 25 REMARK 465 ASN A 26 REMARK 465 LYS A 27 REMARK 465 LEU A 28 REMARK 465 GLN A 29 REMARK 465 ASP A 30 REMARK 465 VAL A 31 REMARK 465 PHE A 32 REMARK 465 THR A 33 REMARK 465 THR A 34 REMARK 465 VAL A 35 REMARK 465 GLY A 36 REMARK 465 VAL A 37 REMARK 465 ASN A 38 REMARK 465 ASN A 39 REMARK 465 PRO A 40 REMARK 465 ILE A 41 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 93 REMARK 465 ALA A 94 REMARK 465 ASN A 95 REMARK 465 GLY A 96 REMARK 465 PHE A 97 REMARK 465 PRO A 328 REMARK 465 ASP A 329 REMARK 465 ILE A 330 REMARK 465 LYS A 331 REMARK 465 GLN A 332 REMARK 465 ARG A 333 REMARK 465 ILE A 334 REMARK 465 SER A 335 REMARK 465 SER A 336 REMARK 465 SER A 337 REMARK 465 LEU A 338 REMARK 465 GLN A 339 REMARK 465 LYS A 340 REMARK 465 TYR A 341 REMARK 465 GLN A 342 REMARK 465 GLN A 343 REMARK 465 GLU A 344 REMARK 465 LEU A 345 REMARK 465 GLU A 346 REMARK 465 ALA A 347 REMARK 465 LEU A 348 REMARK 465 GLY A 349 REMARK 465 PRO A 350 REMARK 465 SER A 351 REMARK 465 LEU A 352 REMARK 465 LEU A 353 REMARK 465 GLY A 354 REMARK 465 ASN A 355 REMARK 465 SER A 356 REMARK 465 ALA A 357 REMARK 465 ASN A 358 REMARK 465 ALA A 359 REMARK 465 GLY A 360 REMARK 465 LEU A 361 REMARK 465 GLU A 362 REMARK 465 VAL A 363 REMARK 465 LEU A 364 REMARK 465 PHE A 365 REMARK 465 GLN A 366 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 89 CG CD OE1 NE2 REMARK 470 GLU A 99 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 GLU A 246 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 176 OD1 ASP A 219 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 68 9.56 -158.90 REMARK 500 ASP A 103 57.10 -103.34 REMARK 500 LEU A 120 70.14 -117.30 REMARK 500 ALA A 147 -142.53 -114.80 REMARK 500 ASP A 185 34.00 -99.35 REMARK 500 ARG A 233 30.68 -141.08 REMARK 500 ILE A 258 -75.79 -108.91 REMARK 500 GLN A 325 59.93 -102.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 57 OG REMARK 620 2 THR A 77 OG1 94.0 REMARK 620 3 GDP A1001 O3B 70.2 149.1 REMARK 620 4 HOH A1131 O 97.2 82.4 73.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-7874 RELATED DB: EMDB DBREF 6DI7 A 1 358 UNP G0SFF0 G0SFF0_CHATD 1 358 SEQADV 6DI7 MET A -19 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLY A -18 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 SER A -17 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 SER A -16 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -15 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -14 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -13 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -12 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -11 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A -10 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 SER A -9 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 SER A -8 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLY A -7 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 LEU A -6 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 VAL A -5 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 PRO A -4 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 ARG A -3 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLY A -2 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 SER A -1 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 HIS A 0 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 ALA A 359 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLY A 360 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 LEU A 361 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLU A 362 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 VAL A 363 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 LEU A 364 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 PHE A 365 UNP G0SFF0 EXPRESSION TAG SEQADV 6DI7 GLN A 366 UNP G0SFF0 EXPRESSION TAG SEQRES 1 A 386 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 386 LEU VAL PRO ARG GLY SER HIS MET THR ALA ASP ALA PRO SEQRES 3 A 386 ALA GLY THR LEU ALA GLN PRO GLY GLY ILE SER ASP PRO SEQRES 4 A 386 ASN LEU ILE LYS LEU VAL ASN LYS LEU GLN ASP VAL PHE SEQRES 5 A 386 THR THR VAL GLY VAL ASN ASN PRO ILE ASP LEU PRO GLN SEQRES 6 A 386 ILE VAL VAL VAL GLY SER GLN SER SER GLY LYS SER SER SEQRES 7 A 386 VAL LEU GLU ASN ILE VAL GLY ARG ASP PHE LEU PRO ARG SEQRES 8 A 386 GLY GLN GLY ILE VAL THR ARG ARG PRO LEU VAL LEU GLN SEQRES 9 A 386 LEU ILE ASN ARG GLN SER SER GLY ASN ALA ASN GLY PHE SEQRES 10 A 386 ASP GLU ARG LEU ALA ASP SER THR ASP LYS ALA ALA ASN SEQRES 11 A 386 LEU ASP GLU TRP GLY GLU PHE LEU HIS LEU PRO GLY GLN SEQRES 12 A 386 LYS PHE TYR ASP PHE ASN LYS ILE ARG ASP GLU ILE ASN SEQRES 13 A 386 ARG GLU THR GLU ALA LYS VAL GLY ARG ASN ALA GLY ILE SEQRES 14 A 386 SER PRO ALA PRO ILE ASN LEU ARG ILE TYR SER PRO HIS SEQRES 15 A 386 VAL LEU ASN LEU THR LEU VAL ASP LEU PRO GLY LEU THR SEQRES 16 A 386 ARG VAL PRO VAL GLY ASP GLN PRO ARG ASP ILE GLU ARG SEQRES 17 A 386 GLN ILE ARG ASP MET ILE LEU LYS TYR ILE GLN LYS PRO SEQRES 18 A 386 ASN ALA ILE ILE LEU ALA VAL THR ALA ALA ASN VAL ASP SEQRES 19 A 386 LEU ALA ASN SER ASP GLY LEU LYS LEU ALA ARG GLU VAL SEQRES 20 A 386 ASP PRO GLU GLY GLN ARG THR ILE GLY VAL LEU THR LYS SEQRES 21 A 386 VAL ASP LEU MET ASP GLU GLY THR ASP VAL VAL ASP ILE SEQRES 22 A 386 LEU ALA GLY ARG ILE ILE PRO LEU ARG LEU GLY TYR VAL SEQRES 23 A 386 PRO VAL VAL ASN ARG GLY GLN ARG ASP ILE ASP ASN LYS SEQRES 24 A 386 LYS PRO ILE THR ALA ALA LEU GLU ALA GLU LYS ALA PHE SEQRES 25 A 386 PHE GLU ASN HIS LYS ALA TYR ARG ASN LYS SER ALA TYR SEQRES 26 A 386 CYS GLY THR PRO TYR LEU ALA ARG LYS LEU ASN LEU ILE SEQRES 27 A 386 LEU MET MET HIS ILE LYS GLN THR LEU PRO ASP ILE LYS SEQRES 28 A 386 GLN ARG ILE SER SER SER LEU GLN LYS TYR GLN GLN GLU SEQRES 29 A 386 LEU GLU ALA LEU GLY PRO SER LEU LEU GLY ASN SER ALA SEQRES 30 A 386 ASN ALA GLY LEU GLU VAL LEU PHE GLN HET GDP A1001 28 HET MG A1002 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION FORMUL 2 GDP C10 H15 N5 O11 P2 FORMUL 3 MG MG 2+ FORMUL 4 HOH *86(H2 O) HELIX 1 AA1 GLY A 55 GLY A 65 1 11 HELIX 2 AA2 ASP A 98 ALA A 102 5 5 HELIX 3 AA3 ASP A 127 GLY A 144 1 18 HELIX 4 AA4 ASP A 185 GLN A 199 1 15 HELIX 5 AA5 ASP A 214 ASN A 217 5 4 HELIX 6 AA6 SER A 218 ASP A 228 1 11 HELIX 7 AA7 LYS A 240 MET A 244 5 5 HELIX 8 AA8 VAL A 250 ALA A 255 1 6 HELIX 9 AA9 GLY A 272 ASN A 278 1 7 HELIX 10 AB1 PRO A 281 HIS A 296 1 16 HELIX 11 AB2 TYR A 299 CYS A 306 5 8 HELIX 12 AB3 GLY A 307 GLN A 325 1 19 SHEET 1 AA1 8 TRP A 114 PHE A 117 0 SHEET 2 AA1 8 ILE A 154 SER A 160 -1 O ARG A 157 N GLU A 116 SHEET 3 AA1 8 LEU A 81 ASN A 87 1 N ILE A 86 O ILE A 158 SHEET 4 AA1 8 LEU A 166 ASP A 170 -1 O LEU A 168 N LEU A 83 SHEET 5 AA1 8 GLN A 45 GLY A 50 1 N ILE A 46 O THR A 167 SHEET 6 AA1 8 ALA A 203 ALA A 210 1 O ILE A 204 N VAL A 47 SHEET 7 AA1 8 THR A 234 THR A 239 1 O ILE A 235 N ILE A 205 SHEET 8 AA1 8 TYR A 265 PRO A 267 1 O VAL A 266 N LEU A 238 LINK OG SER A 57 MG MG A1002 1555 1555 2.48 LINK OG1 THR A 77 MG MG A1002 1555 1555 2.39 LINK O3B GDP A1001 MG MG A1002 1555 1555 2.61 LINK MG MG A1002 O HOH A1131 1555 1555 2.80 SITE 1 AC1 21 SER A 53 SER A 54 GLY A 55 LYS A 56 SITE 2 AC1 21 SER A 57 SER A 58 ARG A 71 LYS A 240 SITE 3 AC1 21 ASP A 242 LEU A 243 ASP A 245 VAL A 269 SITE 4 AC1 21 ASN A 270 ARG A 271 GLY A 272 GLN A 273 SITE 5 AC1 21 ILE A 276 MG A1002 HOH A1102 HOH A1113 SITE 6 AC1 21 HOH A1131 SITE 1 AC2 5 SER A 57 THR A 77 ASP A 170 GDP A1001 SITE 2 AC2 5 HOH A1131 CRYST1 84.979 84.979 271.502 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011768 0.006794 0.000000 0.00000 SCALE2 0.000000 0.013588 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003683 0.00000