HEADER DE NOVO PROTEIN 29-MAY-18 6DKM TITLE DHD131 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHD131_A; COMPND 3 CHAIN: A, C, E, G; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DHD131_B; COMPND 7 CHAIN: B, D, F, H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPUTATIONAL DESIGN, HETERODIMER, COILED-COIL, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.BICK,Z.CHEN,D.BAKER REVDAT 6 03-APR-24 6DKM 1 REMARK REVDAT 5 13-MAR-24 6DKM 1 REMARK REVDAT 4 20-NOV-19 6DKM 1 REMARK REVDAT 3 16-JAN-19 6DKM 1 JRNL REVDAT 2 02-JAN-19 6DKM 1 JRNL REVDAT 1 19-DEC-18 6DKM 0 JRNL AUTH Z.CHEN,S.E.BOYKEN,M.JIA,F.BUSCH,D.FLORES-SOLIS,M.J.BICK, JRNL AUTH 2 P.LU,Z.L.VANAERNUM,A.SAHASRABUDDHE,R.A.LANGAN,S.BERMEO, JRNL AUTH 3 T.J.BRUNETTE,V.K.MULLIGAN,L.P.CARTER,F.DIMAIO,N.G.SGOURAKIS, JRNL AUTH 4 V.H.WYSOCKI,D.BAKER JRNL TITL PROGRAMMABLE DESIGN OF ORTHOGONAL PROTEIN HETERODIMERS. JRNL REF NATURE V. 565 106 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30568301 JRNL DOI 10.1038/S41586-018-0802-Y REMARK 2 REMARK 2 RESOLUTION. 2.38 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3112: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.38 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 21356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.241 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.140 REMARK 3 FREE R VALUE TEST SET COUNT : 1738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.9988 - 5.4456 0.98 1893 168 0.2339 0.2466 REMARK 3 2 5.4456 - 4.3237 0.98 1831 162 0.1994 0.2196 REMARK 3 3 4.3237 - 3.7775 0.97 1836 161 0.1918 0.2300 REMARK 3 4 3.7775 - 3.4323 0.96 1815 151 0.2035 0.2751 REMARK 3 5 3.4323 - 3.1863 0.95 1790 163 0.2442 0.2975 REMARK 3 6 3.1863 - 2.9985 0.90 1659 154 0.2592 0.2980 REMARK 3 7 2.9985 - 2.8484 0.85 1578 147 0.2712 0.3121 REMARK 3 8 2.8484 - 2.7244 0.82 1541 141 0.2846 0.3536 REMARK 3 9 2.7244 - 2.6196 0.79 1450 126 0.3141 0.3851 REMARK 3 10 2.6196 - 2.5292 0.77 1462 122 0.3314 0.3610 REMARK 3 11 2.5292 - 2.4501 0.75 1384 122 0.3250 0.4013 REMARK 3 12 2.4501 - 2.3801 0.73 1379 121 0.3440 0.4456 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.780 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4650 REMARK 3 ANGLE : 0.446 6258 REMARK 3 CHIRALITY : 0.024 741 REMARK 3 PLANARITY : 0.001 803 REMARK 3 DIHEDRAL : 14.740 2933 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ITERATIVE ROUNDS OF MODEL BUILDING IN REMARK 3 COOT AND REFINEMENT WITH PHENIX. REMARK 4 REMARK 4 6DKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234807. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.977017 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS JUNE 17, 2015 REMARK 200 DATA SCALING SOFTWARE : XDS JUNE 17, 2015 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.380 REMARK 200 RESOLUTION RANGE LOW (A) : 42.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.18000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.38 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 1.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.0. REMARK 200 STARTING MODEL: COMPUTATIONAL DESIGN MODEL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE, 0.1M HEPES PH REMARK 280 7.5, 25% (W/V) POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.35450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ARG A 77 REMARK 465 GLY B 76 REMARK 465 SER B 77 REMARK 465 GLU B 115 REMARK 465 VAL B 116 REMARK 465 GLU B 154 REMARK 465 GLY C -1 REMARK 465 THR C 76 REMARK 465 ARG C 77 REMARK 465 GLY E -1 REMARK 465 SER E 0 REMARK 465 ASP E 1 REMARK 465 GLU E 2 REMARK 465 SER E 3 REMARK 465 ASP E 4 REMARK 465 SER E 34 REMARK 465 GLU E 35 REMARK 465 ASP E 36 REMARK 465 LYS E 37 REMARK 465 ARG E 38 REMARK 465 VAL E 39 REMARK 465 SER E 40 REMARK 465 GLU E 41 REMARK 465 GLU E 42 REMARK 465 ARG E 77 REMARK 465 GLY F 76 REMARK 465 SER F 77 REMARK 465 ASP F 78 REMARK 465 GLU F 79 REMARK 465 LYS F 112 REMARK 465 ARG F 113 REMARK 465 GLY F 114 REMARK 465 GLU F 115 REMARK 465 VAL F 116 REMARK 465 SER F 117 REMARK 465 ALA F 153 REMARK 465 GLU F 154 REMARK 465 GLY G -1 REMARK 465 SER G 0 REMARK 465 ARG G 77 REMARK 465 GLY H 76 REMARK 465 GLY H 114 REMARK 465 GLU H 115 REMARK 465 VAL H 116 REMARK 465 SER H 117 REMARK 465 ALA H 153 REMARK 465 GLU H 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 0 OG REMARK 470 ASP A 1 CG OD1 OD2 REMARK 470 GLU A 2 CG CD OE1 OE2 REMARK 470 SER A 3 OG REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 7 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 8 CE NZ REMARK 470 GLU A 15 CD OE1 OE2 REMARK 470 LYS A 18 CE NZ REMARK 470 ARG A 26 NE CZ NH1 NH2 REMARK 470 LYS A 32 CE NZ REMARK 470 SER A 34 OG REMARK 470 ASP A 36 CG OD1 OD2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 ARG A 38 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 39 CG1 CG2 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 ARG A 43 CD NE CZ NH1 NH2 REMARK 470 ARG A 46 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 49 CD OE1 OE2 REMARK 470 ARG A 75 NE CZ NH1 NH2 REMARK 470 THR A 76 OG1 CG2 REMARK 470 GLU B 79 CG CD OE1 OE2 REMARK 470 ASP B 80 CG OD1 OD2 REMARK 470 ARG B 88 CZ NH1 NH2 REMARK 470 ARG B 105 CZ NH1 NH2 REMARK 470 TYR B 111 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ARG B 113 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 118 CG CD OE1 OE2 REMARK 470 GLU B 119 CG CD OE1 OE2 REMARK 470 SER B 121 OG REMARK 470 ARG B 123 CD NE CZ NH1 NH2 REMARK 470 SER C 0 OG REMARK 470 ASP C 1 CG OD1 OD2 REMARK 470 GLU C 2 CG CD OE1 OE2 REMARK 470 ARG C 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 22 CD CE NZ REMARK 470 ARG C 26 CD NE CZ NH1 NH2 REMARK 470 LYS C 32 CE NZ REMARK 470 LYS C 37 CG CD CE NZ REMARK 470 ARG C 38 CG CD NE CZ NH1 NH2 REMARK 470 VAL C 39 CG1 CG2 REMARK 470 GLU C 42 CG CD OE1 OE2 REMARK 470 ARG C 75 NE CZ NH1 NH2 REMARK 470 LYS D 99 CE NZ REMARK 470 ARG D 113 CZ NH1 NH2 REMARK 470 GLU D 115 CG CD OE1 OE2 REMARK 470 GLU D 118 CD OE1 OE2 REMARK 470 GLU D 127 CD OE1 OE2 REMARK 470 GLU D 154 CG CD OE1 OE2 REMARK 470 ARG E 5 CG CD NE CZ NH1 NH2 REMARK 470 LYS E 8 CG CD CE NZ REMARK 470 GLU E 15 CG CD OE1 OE2 REMARK 470 LYS E 18 CD CE NZ REMARK 470 LYS E 22 NZ REMARK 470 GLU E 25 CD OE1 OE2 REMARK 470 LEU E 30 CD1 CD2 REMARK 470 LYS E 32 CD CE NZ REMARK 470 GLU E 33 CG CD OE1 OE2 REMARK 470 ARG E 43 CG CD NE CZ NH1 NH2 REMARK 470 ASN E 44 CG OD1 ND2 REMARK 470 LEU E 47 CG CD1 CD2 REMARK 470 LEU E 48 CG CD1 CD2 REMARK 470 GLU E 49 CD OE1 OE2 REMARK 470 GLU E 60 CG CD OE1 OE2 REMARK 470 LYS E 63 CE NZ REMARK 470 GLU E 67 CD OE1 OE2 REMARK 470 VAL E 72 CG1 CG2 REMARK 470 ARG E 75 CG CD NE CZ NH1 NH2 REMARK 470 THR E 76 OG1 CG2 REMARK 470 ASP F 80 CG OD1 OD2 REMARK 470 GLU F 82 CG CD OE1 OE2 REMARK 470 ARG F 85 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 88 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 95 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 99 CE NZ REMARK 470 GLU F 103 CG CD OE1 OE2 REMARK 470 ARG F 105 CG CD NE CZ NH1 NH2 REMARK 470 ARG F 106 CD NE CZ NH1 NH2 REMARK 470 TYR F 108 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU F 110 CG CD OE1 OE2 REMARK 470 TYR F 111 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU F 118 CG CD OE1 OE2 REMARK 470 GLU F 119 CG CD OE1 OE2 REMARK 470 GLU F 120 CD OE1 OE2 REMARK 470 ARG F 123 CD NE CZ NH1 NH2 REMARK 470 LEU F 125 CG CD1 CD2 REMARK 470 ARG F 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS F 129 CD CE NZ REMARK 470 GLU F 130 CG CD OE1 OE2 REMARK 470 GLU F 136 CG CD OE1 OE2 REMARK 470 ARG F 137 CD NE CZ NH1 NH2 REMARK 470 GLN F 152 CD OE1 NE2 REMARK 470 ASP G 1 CG OD1 OD2 REMARK 470 GLU G 2 CG CD OE1 OE2 REMARK 470 SER G 3 OG REMARK 470 ARG G 5 NE CZ NH1 NH2 REMARK 470 LYS G 8 CD CE NZ REMARK 470 LYS G 18 CE NZ REMARK 470 GLU G 19 CD OE1 OE2 REMARK 470 LYS G 22 CG CD CE NZ REMARK 470 ARG G 26 CD NE CZ NH1 NH2 REMARK 470 LYS G 32 CD CE NZ REMARK 470 LYS G 37 CG CD CE NZ REMARK 470 ARG G 38 CG CD NE CZ NH1 NH2 REMARK 470 VAL G 39 CG1 CG2 REMARK 470 GLU G 41 CG CD OE1 OE2 REMARK 470 ARG G 43 NE CZ NH1 NH2 REMARK 470 GLU G 45 CD OE1 OE2 REMARK 470 GLU G 60 CD OE1 OE2 REMARK 470 THR G 76 OG1 CG2 REMARK 470 SER H 77 OG REMARK 470 GLU H 79 CD OE1 OE2 REMARK 470 LYS H 99 CE NZ REMARK 470 GLU H 103 CD OE1 OE2 REMARK 470 ARG H 105 CD NE CZ NH1 NH2 REMARK 470 ARG H 106 CG CD NE CZ NH1 NH2 REMARK 470 GLU H 110 CG CD OE1 OE2 REMARK 470 TYR H 111 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS H 112 CG CD CE NZ REMARK 470 ARG H 113 CD NE CZ NH1 NH2 REMARK 470 GLU H 118 CG CD OE1 OE2 REMARK 470 GLU H 119 CG CD OE1 OE2 REMARK 470 GLU H 120 CG CD OE1 OE2 REMARK 470 ARG H 123 CG CD NE CZ NH1 NH2 REMARK 470 ARG H 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS H 129 CG CD CE NZ REMARK 470 GLU H 136 CG CD OE1 OE2 REMARK 470 ARG H 137 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG F 147 O HOH F 201 1.58 REMARK 500 O SER C 34 O HOH C 101 2.00 REMARK 500 OE1 GLU G 12 O HOH G 101 2.10 REMARK 500 OE2 GLU G 49 O HOH G 102 2.11 REMARK 500 OE1 GLU A 67 NZ LYS A 70 2.16 REMARK 500 OE1 GLU B 143 O HOH B 201 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 53 OE1 GLU F 84 2655 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 35 47.53 -82.30 REMARK 500 TYR A 74 53.87 -119.99 REMARK 500 LYS G 37 -0.07 82.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DKM A -1 77 PDB 6DKM 6DKM -1 77 DBREF 6DKM B 76 154 PDB 6DKM 6DKM 76 154 DBREF 6DKM C -1 77 PDB 6DKM 6DKM -1 77 DBREF 6DKM D 76 154 PDB 6DKM 6DKM 76 154 DBREF 6DKM E -1 77 PDB 6DKM 6DKM -1 77 DBREF 6DKM F 76 154 PDB 6DKM 6DKM 76 154 DBREF 6DKM G -1 77 PDB 6DKM 6DKM -1 77 DBREF 6DKM H 76 154 PDB 6DKM 6DKM 76 154 SEQRES 1 A 79 GLY SER ASP GLU SER ASP ARG ILE ARG LYS ILE VAL GLU SEQRES 2 A 79 GLU SER ASP GLU ILE VAL LYS GLU SER ARG LYS LEU ALA SEQRES 3 A 79 GLU ARG ALA ARG GLU LEU ILE LYS GLU SER GLU ASP LYS SEQRES 4 A 79 ARG VAL SER GLU GLU ARG ASN GLU ARG LEU LEU GLU GLU SEQRES 5 A 79 LEU LEU ARG ILE LEU ASP GLU ASN ALA GLU LEU LEU LYS SEQRES 6 A 79 ARG ASN LEU GLU LEU LEU LYS GLU VAL LEU TYR ARG THR SEQRES 7 A 79 ARG SEQRES 1 B 79 GLY SER ASP GLU ASP ASP GLU LEU GLU ARG LEU LEU ARG SEQRES 2 B 79 GLU TYR HIS ARG VAL LEU ARG GLU TYR GLU LYS LEU LEU SEQRES 3 B 79 GLU GLU LEU ARG ARG LEU TYR GLU GLU TYR LYS ARG GLY SEQRES 4 B 79 GLU VAL SER GLU GLU GLU SER ASP ARG ILE LEU ARG GLU SEQRES 5 B 79 ILE LYS GLU ILE LEU ASP LYS SER GLU ARG LEU TRP ASP SEQRES 6 B 79 LEU SER GLU GLU VAL TRP ARG THR LEU LEU TYR GLN ALA SEQRES 7 B 79 GLU SEQRES 1 C 79 GLY SER ASP GLU SER ASP ARG ILE ARG LYS ILE VAL GLU SEQRES 2 C 79 GLU SER ASP GLU ILE VAL LYS GLU SER ARG LYS LEU ALA SEQRES 3 C 79 GLU ARG ALA ARG GLU LEU ILE LYS GLU SER GLU ASP LYS SEQRES 4 C 79 ARG VAL SER GLU GLU ARG ASN GLU ARG LEU LEU GLU GLU SEQRES 5 C 79 LEU LEU ARG ILE LEU ASP GLU ASN ALA GLU LEU LEU LYS SEQRES 6 C 79 ARG ASN LEU GLU LEU LEU LYS GLU VAL LEU TYR ARG THR SEQRES 7 C 79 ARG SEQRES 1 D 79 GLY SER ASP GLU ASP ASP GLU LEU GLU ARG LEU LEU ARG SEQRES 2 D 79 GLU TYR HIS ARG VAL LEU ARG GLU TYR GLU LYS LEU LEU SEQRES 3 D 79 GLU GLU LEU ARG ARG LEU TYR GLU GLU TYR LYS ARG GLY SEQRES 4 D 79 GLU VAL SER GLU GLU GLU SER ASP ARG ILE LEU ARG GLU SEQRES 5 D 79 ILE LYS GLU ILE LEU ASP LYS SER GLU ARG LEU TRP ASP SEQRES 6 D 79 LEU SER GLU GLU VAL TRP ARG THR LEU LEU TYR GLN ALA SEQRES 7 D 79 GLU SEQRES 1 E 79 GLY SER ASP GLU SER ASP ARG ILE ARG LYS ILE VAL GLU SEQRES 2 E 79 GLU SER ASP GLU ILE VAL LYS GLU SER ARG LYS LEU ALA SEQRES 3 E 79 GLU ARG ALA ARG GLU LEU ILE LYS GLU SER GLU ASP LYS SEQRES 4 E 79 ARG VAL SER GLU GLU ARG ASN GLU ARG LEU LEU GLU GLU SEQRES 5 E 79 LEU LEU ARG ILE LEU ASP GLU ASN ALA GLU LEU LEU LYS SEQRES 6 E 79 ARG ASN LEU GLU LEU LEU LYS GLU VAL LEU TYR ARG THR SEQRES 7 E 79 ARG SEQRES 1 F 79 GLY SER ASP GLU ASP ASP GLU LEU GLU ARG LEU LEU ARG SEQRES 2 F 79 GLU TYR HIS ARG VAL LEU ARG GLU TYR GLU LYS LEU LEU SEQRES 3 F 79 GLU GLU LEU ARG ARG LEU TYR GLU GLU TYR LYS ARG GLY SEQRES 4 F 79 GLU VAL SER GLU GLU GLU SER ASP ARG ILE LEU ARG GLU SEQRES 5 F 79 ILE LYS GLU ILE LEU ASP LYS SER GLU ARG LEU TRP ASP SEQRES 6 F 79 LEU SER GLU GLU VAL TRP ARG THR LEU LEU TYR GLN ALA SEQRES 7 F 79 GLU SEQRES 1 G 79 GLY SER ASP GLU SER ASP ARG ILE ARG LYS ILE VAL GLU SEQRES 2 G 79 GLU SER ASP GLU ILE VAL LYS GLU SER ARG LYS LEU ALA SEQRES 3 G 79 GLU ARG ALA ARG GLU LEU ILE LYS GLU SER GLU ASP LYS SEQRES 4 G 79 ARG VAL SER GLU GLU ARG ASN GLU ARG LEU LEU GLU GLU SEQRES 5 G 79 LEU LEU ARG ILE LEU ASP GLU ASN ALA GLU LEU LEU LYS SEQRES 6 G 79 ARG ASN LEU GLU LEU LEU LYS GLU VAL LEU TYR ARG THR SEQRES 7 G 79 ARG SEQRES 1 H 79 GLY SER ASP GLU ASP ASP GLU LEU GLU ARG LEU LEU ARG SEQRES 2 H 79 GLU TYR HIS ARG VAL LEU ARG GLU TYR GLU LYS LEU LEU SEQRES 3 H 79 GLU GLU LEU ARG ARG LEU TYR GLU GLU TYR LYS ARG GLY SEQRES 4 H 79 GLU VAL SER GLU GLU GLU SER ASP ARG ILE LEU ARG GLU SEQRES 5 H 79 ILE LYS GLU ILE LEU ASP LYS SER GLU ARG LEU TRP ASP SEQRES 6 H 79 LEU SER GLU GLU VAL TRP ARG THR LEU LEU TYR GLN ALA SEQRES 7 H 79 GLU FORMUL 9 HOH *63(H2 O) HELIX 1 AA1 GLU A 2 GLU A 35 1 34 HELIX 2 AA2 SER A 40 LYS A 70 1 31 HELIX 3 AA3 GLU B 79 ARG B 113 1 35 HELIX 4 AA4 GLU B 118 ALA B 153 1 36 HELIX 5 AA5 ASP C 1 ASP C 36 1 36 HELIX 6 AA6 SER C 40 GLU C 71 1 32 HELIX 7 AA7 SER D 77 LYS D 112 1 36 HELIX 8 AA8 SER D 117 GLU D 154 1 38 HELIX 9 AA9 ILE E 6 GLU E 33 1 28 HELIX 10 AB1 ASN E 44 GLU E 71 1 28 HELIX 11 AB2 ASP F 81 TYR F 111 1 31 HELIX 12 AB3 GLU F 119 GLN F 152 1 34 HELIX 13 AB4 GLU G 2 LYS G 37 1 36 HELIX 14 AB5 SER G 40 LYS G 70 1 31 HELIX 15 AB6 GLU G 71 LEU G 73 5 3 HELIX 16 AB7 ASP H 78 ARG H 113 1 36 HELIX 17 AB8 GLU H 119 GLN H 152 1 34 CRYST1 39.199 74.709 105.257 90.00 92.75 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025511 0.000000 0.001224 0.00000 SCALE2 0.000000 0.013385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009511 0.00000