HEADER TRANSFERASE 01-JUN-18 6DLK TITLE CRYSTAL STRUCTURE OF DNA POLYMERASE III SUBUNIT BETA FROM RICKETTSIA TITLE 2 RICKETTSII COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA SLIDING CLAMP; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICKETTSIA RICKETTSII (STRAIN SHEILA SMITH); SOURCE 3 ORGANISM_TAXID: 392021; SOURCE 4 STRAIN: SHEILA SMITH; SOURCE 5 GENE: A1G_03290; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: RIRIA.17987.A.B1 KEYWDS SSGCID, DNAN, DNA POLYMERASE III BETA, POTENTIAL DRUG TARGET, SLIDING KEYWDS 2 CLAMP, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6DLK 1 REMARK REVDAT 1 03-OCT-18 6DLK 0 JRNL AUTH D.G.CONRADY,D.M.DRANOW,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DNA POLYMERASE III SUBUNIT BETA FROM JRNL TITL 2 RICKETTSIA RICKETTSII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 60951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.240 REMARK 3 FREE R VALUE TEST SET COUNT : 1976 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6554 - 4.8169 0.98 4388 138 0.1604 0.1821 REMARK 3 2 4.8169 - 3.8246 0.99 4277 122 0.1358 0.1669 REMARK 3 3 3.8246 - 3.3415 0.99 4224 145 0.1694 0.1982 REMARK 3 4 3.3415 - 3.0362 0.99 4188 158 0.1742 0.2494 REMARK 3 5 3.0362 - 2.8186 1.00 4248 123 0.1798 0.2285 REMARK 3 6 2.8186 - 2.6525 1.00 4207 147 0.1717 0.2337 REMARK 3 7 2.6525 - 2.5197 1.00 4196 131 0.1689 0.2258 REMARK 3 8 2.5197 - 2.4100 1.00 4198 145 0.1663 0.2106 REMARK 3 9 2.4100 - 2.3173 1.00 4173 150 0.1644 0.2296 REMARK 3 10 2.3173 - 2.2373 1.00 4210 136 0.1669 0.1830 REMARK 3 11 2.2373 - 2.1674 1.00 4158 154 0.1750 0.2328 REMARK 3 12 2.1674 - 2.1054 1.00 4166 136 0.1835 0.2356 REMARK 3 13 2.1054 - 2.0500 1.00 4206 137 0.2062 0.2763 REMARK 3 14 2.0500 - 2.0000 1.00 4136 154 0.2490 0.3310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5866 REMARK 3 ANGLE : 1.201 7980 REMARK 3 CHIRALITY : 0.082 982 REMARK 3 PLANARITY : 0.008 1015 REMARK 3 DIHEDRAL : 13.758 3612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4923 19.2130 -3.8959 REMARK 3 T TENSOR REMARK 3 T11: 0.2088 T22: 0.2259 REMARK 3 T33: 0.1981 T12: 0.0012 REMARK 3 T13: -0.0142 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 1.2274 L22: 1.5150 REMARK 3 L33: 0.6754 L12: -0.8393 REMARK 3 L13: -0.1305 L23: 0.3074 REMARK 3 S TENSOR REMARK 3 S11: -0.0653 S12: -0.0599 S13: 0.0619 REMARK 3 S21: 0.1168 S22: 0.0682 S23: -0.0273 REMARK 3 S31: 0.0647 S32: 0.0909 S33: -0.0056 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 141 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4652 -0.8333 -12.5693 REMARK 3 T TENSOR REMARK 3 T11: 0.2258 T22: 0.2623 REMARK 3 T33: 0.2065 T12: 0.0976 REMARK 3 T13: -0.0271 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.0553 L22: 2.3998 REMARK 3 L33: 2.4142 L12: -0.4064 REMARK 3 L13: -0.8442 L23: 0.3177 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: 0.1002 S13: -0.2578 REMARK 3 S21: -0.0331 S22: -0.0843 S23: -0.0823 REMARK 3 S31: 0.4407 S32: 0.3148 S33: 0.0729 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4437 3.3687 -35.3540 REMARK 3 T TENSOR REMARK 3 T11: 0.4528 T22: 0.6756 REMARK 3 T33: 0.3797 T12: 0.2771 REMARK 3 T13: 0.1244 T23: 0.0635 REMARK 3 L TENSOR REMARK 3 L11: 0.8186 L22: 1.6660 REMARK 3 L33: 1.7599 L12: -0.3972 REMARK 3 L13: -0.1600 L23: -1.4613 REMARK 3 S TENSOR REMARK 3 S11: 0.0864 S12: 0.1180 S13: 0.0081 REMARK 3 S21: -0.5096 S22: -0.4954 S23: -0.4790 REMARK 3 S31: 0.6762 S32: 1.0499 S33: 0.2341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1358 24.8097 -53.0433 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.3478 REMARK 3 T33: 0.3430 T12: 0.0560 REMARK 3 T13: 0.0982 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 2.3042 L22: 6.9355 REMARK 3 L33: 4.3703 L12: -1.7439 REMARK 3 L13: 0.8740 L23: -1.9196 REMARK 3 S TENSOR REMARK 3 S11: 0.0481 S12: 0.4018 S13: 0.0236 REMARK 3 S21: -0.3937 S22: -0.2609 S23: -0.0998 REMARK 3 S31: 0.0802 S32: 0.5066 S33: 0.1786 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 116 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.3914 45.7658 -45.8926 REMARK 3 T TENSOR REMARK 3 T11: 0.2881 T22: 0.2043 REMARK 3 T33: 0.2812 T12: 0.0080 REMARK 3 T13: -0.0368 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 2.7228 L22: 1.8162 REMARK 3 L33: 2.1740 L12: -1.1705 REMARK 3 L13: -1.0831 L23: 0.1517 REMARK 3 S TENSOR REMARK 3 S11: 0.0825 S12: 0.0819 S13: -0.0285 REMARK 3 S21: -0.1247 S22: -0.0576 S23: -0.1260 REMARK 3 S31: 0.0190 S32: 0.0500 S33: -0.0241 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 258 THROUGH 379 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9313 47.1867 -18.3302 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.1930 REMARK 3 T33: 0.2316 T12: 0.0348 REMARK 3 T13: -0.0288 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.0311 L22: 2.2735 REMARK 3 L33: 4.2419 L12: 0.3632 REMARK 3 L13: -0.3865 L23: -1.5213 REMARK 3 S TENSOR REMARK 3 S11: -0.0073 S12: -0.0454 S13: 0.1295 REMARK 3 S21: 0.1515 S22: 0.0465 S23: 0.0827 REMARK 3 S31: -0.4259 S32: -0.1288 S33: -0.0304 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DLK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234867. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60964 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 36.649 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.037 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.65 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MORDA REMARK 200 STARTING MODEL: 4TSZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: RIGAKU REAGENTS TOP96 G6: (0.5 M REMARK 280 AMMONIUM SULFATE, 0.1 M SODIUM CITRATE:CITRIC ACID PH 5.6, 1 M REMARK 280 LITHIUM SULFATE) MIXED 1:1 WITH 20 MG/ML PROTEIN IN SITTING DROP REMARK 280 VAPOR DIFFUSION. TRAY ID 291006G9, CRYSTAL ID QTV9-3, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.54500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.78500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.54500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.78500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 GLU B 23 REMARK 465 LYS B 24 REMARK 465 ARG B 25 REMARK 465 ASN B 26 REMARK 465 VAL B 27 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 GLN A 187 CG CD OE1 NE2 REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 GLU A 254 CG CD OE1 OE2 REMARK 470 SER A 256 OG REMARK 470 GLU A 280 CG CD OE1 OE2 REMARK 470 LYS A 281 CG CD CE NZ REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 292 CG CD OE1 OE2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 LYS A 307 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 317 CG CD OE1 OE2 REMARK 470 SER A 318 OG REMARK 470 GLU A 321 CG CD OE1 OE2 REMARK 470 ASN A 323 CG OD1 ND2 REMARK 470 ASP A 325 CG OD1 OD2 REMARK 470 GLU A 326 CG CD OE1 OE2 REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 LYS A 378 CG CD CE NZ REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 GLN B 13 CG CD OE1 NE2 REMARK 470 VAL B 22 CG1 CG2 REMARK 470 ILE B 28 CG1 CG2 CD1 REMARK 470 GLU B 30 CG CD OE1 OE2 REMARK 470 GLN B 39 CG CD OE1 NE2 REMARK 470 MET B 50 CG SD CE REMARK 470 GLN B 61 CG CD OE1 NE2 REMARK 470 LYS B 73 CG CD CE NZ REMARK 470 ARG B 80 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 THR B 94 OG1 CG2 REMARK 470 LYS B 100 CG CD CE NZ REMARK 470 LYS B 102 CG CD CE NZ REMARK 470 SER B 115 OG REMARK 470 SER B 121 OG REMARK 470 LYS B 129 CG CD CE NZ REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 GLU B 185 CG CD OE1 OE2 REMARK 470 LYS B 186 CG CD CE NZ REMARK 470 LYS B 198 CG CD CE NZ REMARK 470 LYS B 211 CG CD CE NZ REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 239 CG CD CE NZ REMARK 470 GLU B 254 CG CD OE1 OE2 REMARK 470 GLU B 280 CG CD OE1 OE2 REMARK 470 LYS B 281 CG CD CE NZ REMARK 470 LYS B 316 CG CD CE NZ REMARK 470 GLU B 317 CG CD OE1 OE2 REMARK 470 LYS B 345 CG CD CE NZ REMARK 470 LYS B 378 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 31 O HOH A 501 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 24 21.69 -149.06 REMARK 500 ASN A 156 33.96 -83.51 REMARK 500 ASP A 164 -113.72 60.34 REMARK 500 GLU A 215 -162.73 -107.60 REMARK 500 ASN A 222 -163.51 -130.00 REMARK 500 GLU A 232 -47.67 68.68 REMARK 500 PHE A 282 75.61 -152.60 REMARK 500 ASN A 323 38.97 -86.88 REMARK 500 SER A 354 -104.31 -124.07 REMARK 500 ASN B 49 -169.88 -129.21 REMARK 500 ARG B 152 64.01 -118.36 REMARK 500 ASN B 156 36.96 -84.53 REMARK 500 ASP B 164 -105.19 60.29 REMARK 500 GLU B 215 -159.35 -111.22 REMARK 500 GLU B 232 -45.46 72.50 REMARK 500 ALA B 302 11.38 58.85 REMARK 500 ASN B 323 35.00 -89.18 REMARK 500 SER B 354 -104.16 -124.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 DBREF1 6DLK A 1 379 UNP A0A0H3AWV3_RICRS DBREF2 6DLK A A0A0H3AWV3 1 379 DBREF1 6DLK B 1 379 UNP A0A0H3AWV3_RICRS DBREF2 6DLK B A0A0H3AWV3 1 379 SEQADV 6DLK MET A -7 UNP A0A0H3AWV INITIATING METHIONINE SEQADV 6DLK ALA A -6 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A -5 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A -4 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A -3 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A -2 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A -1 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS A 0 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK MET B -7 UNP A0A0H3AWV INITIATING METHIONINE SEQADV 6DLK ALA B -6 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B -5 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B -4 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B -3 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B -2 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B -1 UNP A0A0H3AWV EXPRESSION TAG SEQADV 6DLK HIS B 0 UNP A0A0H3AWV EXPRESSION TAG SEQRES 1 A 387 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS LEU ILE SEQRES 2 A 387 VAL GLU THR LYS THR LEU VAL GLN SER LEU GLY PHE ALA SEQRES 3 A 387 SER SER VAL VAL GLU LYS ARG ASN VAL ILE PRO GLU TYR SEQRES 4 A 387 ALA ASN ILE LYS LEU SER ALA GLN ASP GLY ASN LEU GLU SEQRES 5 A 387 LEU SER SER THR ASN MET ASP LEU TYR LEU SER GLN LYS SEQRES 6 A 387 ILE ALA VAL GLN VAL VAL SER GLU GLY GLU CYS THR VAL SEQRES 7 A 387 SER THR LYS THR LEU ASN ASP ILE VAL ARG LYS LEU PRO SEQRES 8 A 387 ASP SER GLU LEU THR LEU THR ASP LEU GLY THR THR GLY SEQRES 9 A 387 LEU GLU ILE LYS GLY LYS ASN CYS LYS PHE ASN LEU PHE SEQRES 10 A 387 THR LEU PRO VAL SER SER PHE PRO ALA MET ASP SER ILE SEQRES 11 A 387 ASN PRO GLU ALA SER PHE LYS ILE SER CYS THR ASP PHE SEQRES 12 A 387 ALA LYS ILE ILE GLU SER THR LYS PHE SER ILE SER LEU SEQRES 13 A 387 ASP GLU THR ARG TYR ASN LEU ASN GLY VAL TYR LEU HIS SEQRES 14 A 387 ILE LYS ASP LYS GLU PHE CYS SER ALA SER THR ASP GLY SEQRES 15 A 387 HIS ARG LEU SER ILE SER TRP VAL THR LEU GLU LYS GLN SEQRES 16 A 387 ILE LYS ASN PHE GLY VAL ILE LEU PRO GLN LYS SER ALA SEQRES 17 A 387 GLU GLU ILE LEU LYS ILE VAL LYS ASP PRO LYS ASN ILE SEQRES 18 A 387 ASN GLU ASP ILE GLU ILE LEU LEU ASN SER ASN LYS ILE SEQRES 19 A 387 LYS PHE ILE CYS ASN GLU ASN THR ILE MET LEU SER LYS SEQRES 20 A 387 LEU ILE ASP GLY THR PHE PRO ASP TYR SER THR PHE ILE SEQRES 21 A 387 PRO GLU SER SER SER SER LYS LEU VAL ILE ASN ARG LYS SEQRES 22 A 387 MET PHE ALA ASP SER ILE GLU ARG ILE ALA ILE ILE THR SEQRES 23 A 387 VAL GLU LYS PHE ARG ALA VAL LYS LEU SER LEU SER ARG SEQRES 24 A 387 GLU THR LEU GLU ILE SER ALA VAL GLY GLU ALA ARG GLY SEQRES 25 A 387 ASN ALA LYS GLU VAL ILE ASN SER SER GLN ASP LYS GLU SEQRES 26 A 387 SER PHE TYR GLU TYR ASN SER ASP GLU SER LEU ALA ILE SEQRES 27 A 387 GLY PHE ASN PRO GLN TYR LEU GLU ASP VAL LEU LYS ALA SEQRES 28 A 387 VAL LYS SER ASP LEU VAL GLU LEU TYR PHE SER ASP VAL SEQRES 29 A 387 SER ALA PRO VAL LEU ILE LYS PHE PRO GLU ASN PRO LYS SEQRES 30 A 387 ASP ILE PHE VAL VAL MET PRO VAL LYS VAL SEQRES 1 B 387 MET ALA HIS HIS HIS HIS HIS HIS MET LEU LYS LEU ILE SEQRES 2 B 387 VAL GLU THR LYS THR LEU VAL GLN SER LEU GLY PHE ALA SEQRES 3 B 387 SER SER VAL VAL GLU LYS ARG ASN VAL ILE PRO GLU TYR SEQRES 4 B 387 ALA ASN ILE LYS LEU SER ALA GLN ASP GLY ASN LEU GLU SEQRES 5 B 387 LEU SER SER THR ASN MET ASP LEU TYR LEU SER GLN LYS SEQRES 6 B 387 ILE ALA VAL GLN VAL VAL SER GLU GLY GLU CYS THR VAL SEQRES 7 B 387 SER THR LYS THR LEU ASN ASP ILE VAL ARG LYS LEU PRO SEQRES 8 B 387 ASP SER GLU LEU THR LEU THR ASP LEU GLY THR THR GLY SEQRES 9 B 387 LEU GLU ILE LYS GLY LYS ASN CYS LYS PHE ASN LEU PHE SEQRES 10 B 387 THR LEU PRO VAL SER SER PHE PRO ALA MET ASP SER ILE SEQRES 11 B 387 ASN PRO GLU ALA SER PHE LYS ILE SER CYS THR ASP PHE SEQRES 12 B 387 ALA LYS ILE ILE GLU SER THR LYS PHE SER ILE SER LEU SEQRES 13 B 387 ASP GLU THR ARG TYR ASN LEU ASN GLY VAL TYR LEU HIS SEQRES 14 B 387 ILE LYS ASP LYS GLU PHE CYS SER ALA SER THR ASP GLY SEQRES 15 B 387 HIS ARG LEU SER ILE SER TRP VAL THR LEU GLU LYS GLN SEQRES 16 B 387 ILE LYS ASN PHE GLY VAL ILE LEU PRO GLN LYS SER ALA SEQRES 17 B 387 GLU GLU ILE LEU LYS ILE VAL LYS ASP PRO LYS ASN ILE SEQRES 18 B 387 ASN GLU ASP ILE GLU ILE LEU LEU ASN SER ASN LYS ILE SEQRES 19 B 387 LYS PHE ILE CYS ASN GLU ASN THR ILE MET LEU SER LYS SEQRES 20 B 387 LEU ILE ASP GLY THR PHE PRO ASP TYR SER THR PHE ILE SEQRES 21 B 387 PRO GLU SER SER SER SER LYS LEU VAL ILE ASN ARG LYS SEQRES 22 B 387 MET PHE ALA ASP SER ILE GLU ARG ILE ALA ILE ILE THR SEQRES 23 B 387 VAL GLU LYS PHE ARG ALA VAL LYS LEU SER LEU SER ARG SEQRES 24 B 387 GLU THR LEU GLU ILE SER ALA VAL GLY GLU ALA ARG GLY SEQRES 25 B 387 ASN ALA LYS GLU VAL ILE ASN SER SER GLN ASP LYS GLU SEQRES 26 B 387 SER PHE TYR GLU TYR ASN SER ASP GLU SER LEU ALA ILE SEQRES 27 B 387 GLY PHE ASN PRO GLN TYR LEU GLU ASP VAL LEU LYS ALA SEQRES 28 B 387 VAL LYS SER ASP LEU VAL GLU LEU TYR PHE SER ASP VAL SEQRES 29 B 387 SER ALA PRO VAL LEU ILE LYS PHE PRO GLU ASN PRO LYS SEQRES 30 B 387 ASP ILE PHE VAL VAL MET PRO VAL LYS VAL HET EDO A 401 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *537(H2 O) HELIX 1 AA1 THR A 8 VAL A 22 1 15 HELIX 2 AA2 THR A 72 ARG A 80 1 9 HELIX 3 AA3 GLY A 93 THR A 95 5 3 HELIX 4 AA4 PRO A 112 PHE A 116 5 5 HELIX 5 AA5 CYS A 132 SER A 141 1 10 HELIX 6 AA6 THR A 142 ILE A 146 5 5 HELIX 7 AA7 ARG A 152 LEU A 155 5 4 HELIX 8 AA8 GLN A 197 ASP A 209 1 13 HELIX 9 AA9 ASP A 247 ILE A 252 5 6 HELIX 10 AB1 ARG A 264 ALA A 275 1 12 HELIX 11 AB2 ILE A 276 THR A 278 5 3 HELIX 12 AB3 VAL A 279 ARG A 283 5 5 HELIX 13 AB4 ASP A 315 SER A 318 5 4 HELIX 14 AB5 ASN A 333 VAL A 344 1 12 HELIX 15 AB6 THR B 8 VAL B 22 1 15 HELIX 16 AB7 ILE B 28 TYR B 31 5 4 HELIX 17 AB8 THR B 72 ARG B 80 1 9 HELIX 18 AB9 GLY B 93 THR B 95 5 3 HELIX 19 AC1 PRO B 112 PHE B 116 5 5 HELIX 20 AC2 CYS B 132 SER B 141 1 10 HELIX 21 AC3 THR B 142 ILE B 146 5 5 HELIX 22 AC4 ASP B 149 LEU B 155 5 7 HELIX 23 AC5 GLN B 197 LYS B 208 1 12 HELIX 24 AC6 ASP B 247 ILE B 252 5 6 HELIX 25 AC7 ARG B 264 ILE B 276 1 13 HELIX 26 AC8 ILE B 277 THR B 278 5 2 HELIX 27 AC9 VAL B 279 ARG B 283 5 5 HELIX 28 AD1 ASP B 315 SER B 318 5 4 HELIX 29 AD2 ASN B 333 LYS B 342 1 10 SHEET 1 AA1 9 GLN A 61 SER A 64 0 SHEET 2 AA1 9 LYS A 3 GLU A 7 -1 N LYS A 3 O SER A 64 SHEET 3 AA1 9 GLU A 86 ASP A 91 -1 O LEU A 87 N VAL A 6 SHEET 4 AA1 9 LEU A 97 LYS A 100 -1 O GLU A 98 N THR A 90 SHEET 5 AA1 9 CYS A 104 LEU A 108 -1 O LEU A 108 N LEU A 97 SHEET 6 AA1 9 GLY B 304 ASN B 311 -1 O ASN B 305 N ASN A 107 SHEET 7 AA1 9 THR B 293 GLY B 300 -1 N ILE B 296 O GLU B 308 SHEET 8 AA1 9 VAL B 285 LEU B 289 -1 N LYS B 286 O SER B 297 SHEET 9 AA1 9 LEU B 328 PHE B 332 -1 O LEU B 328 N LEU B 289 SHEET 1 AA2 8 GLY A 66 SER A 71 0 SHEET 2 AA2 8 ASN A 33 GLN A 39 -1 N LEU A 36 O CYS A 68 SHEET 3 AA2 8 ASN A 42 THR A 48 -1 O GLU A 44 N SER A 37 SHEET 4 AA2 8 LEU A 52 ALA A 59 -1 O GLN A 56 N LEU A 45 SHEET 5 AA2 8 THR A 234 LYS A 239 -1 O ILE A 235 N SER A 55 SHEET 6 AA2 8 LYS A 225 CYS A 230 -1 N PHE A 228 O MET A 236 SHEET 7 AA2 8 ASP A 216 LEU A 221 -1 N LEU A 220 O LYS A 227 SHEET 8 AA2 8 ALA A 126 SER A 131 -1 N PHE A 128 O ILE A 219 SHEET 1 AA3 9 GLY A 192 PRO A 196 0 SHEET 2 AA3 9 GLY A 157 LYS A 163 -1 N VAL A 158 O LEU A 195 SHEET 3 AA3 9 GLU A 166 THR A 172 -1 O CYS A 168 N HIS A 161 SHEET 4 AA3 9 ARG A 176 THR A 183 -1 O VAL A 182 N PHE A 167 SHEET 5 AA3 9 ASP A 370 VAL A 374 -1 O ILE A 371 N ILE A 179 SHEET 6 AA3 9 VAL A 360 LYS A 363 -1 N VAL A 360 O VAL A 374 SHEET 7 AA3 9 LEU A 348 PHE A 353 -1 N TYR A 352 O LEU A 361 SHEET 8 AA3 9 SER A 258 ASN A 263 -1 N LEU A 260 O LEU A 351 SHEET 9 AA3 9 TYR A 320 TYR A 322 -1 O GLU A 321 N VAL A 261 SHEET 1 AA4 9 LEU A 328 PHE A 332 0 SHEET 2 AA4 9 VAL A 285 LEU A 289 -1 N LEU A 289 O LEU A 328 SHEET 3 AA4 9 THR A 293 GLY A 300 -1 O SER A 297 N LYS A 286 SHEET 4 AA4 9 GLY A 304 ASN A 311 -1 O ILE A 310 N LEU A 294 SHEET 5 AA4 9 CYS B 104 LEU B 108 -1 O LYS B 105 N LYS A 307 SHEET 6 AA4 9 LEU B 97 LYS B 100 -1 N ILE B 99 O PHE B 106 SHEET 7 AA4 9 GLU B 86 ASP B 91 -1 N THR B 90 O GLU B 98 SHEET 8 AA4 9 LYS B 3 GLU B 7 -1 N VAL B 6 O LEU B 87 SHEET 9 AA4 9 GLN B 61 SER B 64 -1 O GLN B 61 N ILE B 5 SHEET 1 AA5 8 GLY B 66 SER B 71 0 SHEET 2 AA5 8 ASN B 33 GLN B 39 -1 N LEU B 36 O CYS B 68 SHEET 3 AA5 8 ASN B 42 THR B 48 -1 O GLU B 44 N SER B 37 SHEET 4 AA5 8 LEU B 52 ALA B 59 -1 O LEU B 54 N SER B 47 SHEET 5 AA5 8 THR B 234 LYS B 239 -1 O ILE B 235 N SER B 55 SHEET 6 AA5 8 LYS B 225 CYS B 230 -1 N PHE B 228 O MET B 236 SHEET 7 AA5 8 ASP B 216 LEU B 221 -1 N LEU B 220 O LYS B 227 SHEET 8 AA5 8 ALA B 126 SER B 131 -1 N ILE B 130 O ILE B 217 SHEET 1 AA6 9 GLY B 192 PRO B 196 0 SHEET 2 AA6 9 GLY B 157 LYS B 163 -1 N LEU B 160 O VAL B 193 SHEET 3 AA6 9 GLU B 166 THR B 172 -1 O CYS B 168 N HIS B 161 SHEET 4 AA6 9 ARG B 176 THR B 183 -1 O VAL B 182 N PHE B 167 SHEET 5 AA6 9 ASN B 367 VAL B 374 -1 O ILE B 371 N ILE B 179 SHEET 6 AA6 9 VAL B 360 PHE B 364 -1 N ILE B 362 O PHE B 372 SHEET 7 AA6 9 LEU B 348 PHE B 353 -1 N GLU B 350 O LYS B 363 SHEET 8 AA6 9 SER B 258 ASN B 263 -1 N LEU B 260 O LEU B 351 SHEET 9 AA6 9 TYR B 320 TYR B 322 -1 O GLU B 321 N VAL B 261 SITE 1 AC1 7 ASP A 120 LYS A 225 LEU A 237 SER A 238 SITE 2 AC1 7 LYS A 239 HOH A 591 HOH A 609 SITE 1 AC2 4 SER B 256 SER B 257 SER B 258 ASN B 323 SITE 1 AC3 2 TRP B 181 HOH B 628 SITE 1 AC4 7 TYR A 153 ARG B 152 GLY B 174 PRO B 246 SITE 2 AC4 7 HOH B 522 HOH B 589 HOH B 658 CRYST1 79.090 97.570 115.830 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012644 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010249 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008633 0.00000