data_6DLS # _entry.id 6DLS # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.358 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DLS pdb_00006dls 10.2210/pdb6dls/pdb WWPDB D_1000234882 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DLS _pdbx_database_status.recvd_initial_deposition_date 2018-06-02 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Peselis, A.' 1 ? 'Serganov, A.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1552-4469 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 14 _citation.language ? _citation.page_first 887 _citation.page_last 894 _citation.title 'ykkC riboswitches employ an add-on helix to adjust specificity for polyanionic ligands.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41589-018-0114-4 _citation.pdbx_database_id_PubMed 30120360 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Peselis, A.' 1 ? primary 'Serganov, A.' 2 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 122.80 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6DLS _cell.details ? _cell.formula_units_Z ? _cell.length_a 85.220 _cell.length_a_esd ? _cell.length_b 91.977 _cell.length_b_esd ? _cell.length_c 75.058 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DLS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PRPP Riboswitch' 34902.508 1 ? ? ? ? 2 non-polymer syn 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose 390.070 1 ? ? ? ? 3 non-polymer syn 'THALLIUM (I) ION' 204.383 1 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 3 ? ? ? ? 5 water nat water 18.015 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(GTP)GAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACC GGAGGGAUAGAAGCCCAGGCGGGUAGGUUU(CCC) ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAAAGUGUGUCUAGGGUUCCGCGUGCUUCGGCACGGACUGGUCCAAGUGACACAGACGCAUUCGUGCGUUACACCGGAG GGAUAGAAGCCCAGGCGGGUAGGUUUC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GTP n 1 2 G n 1 3 A n 1 4 A n 1 5 A n 1 6 G n 1 7 U n 1 8 G n 1 9 U n 1 10 G n 1 11 U n 1 12 C n 1 13 U n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 U n 1 20 C n 1 21 C n 1 22 G n 1 23 C n 1 24 G n 1 25 U n 1 26 G n 1 27 C n 1 28 U n 1 29 U n 1 30 C n 1 31 G n 1 32 G n 1 33 C n 1 34 A n 1 35 C n 1 36 G n 1 37 G n 1 38 A n 1 39 C n 1 40 U n 1 41 G n 1 42 G n 1 43 U n 1 44 C n 1 45 C n 1 46 A n 1 47 A n 1 48 G n 1 49 U n 1 50 G n 1 51 A n 1 52 C n 1 53 A n 1 54 C n 1 55 A n 1 56 G n 1 57 A n 1 58 C n 1 59 G n 1 60 C n 1 61 A n 1 62 U n 1 63 U n 1 64 C n 1 65 G n 1 66 U n 1 67 G n 1 68 C n 1 69 G n 1 70 U n 1 71 U n 1 72 A n 1 73 C n 1 74 A n 1 75 C n 1 76 C n 1 77 G n 1 78 G n 1 79 A n 1 80 G n 1 81 G n 1 82 G n 1 83 A n 1 84 U n 1 85 A n 1 86 G n 1 87 A n 1 88 A n 1 89 G n 1 90 C n 1 91 C n 1 92 C n 1 93 A n 1 94 G n 1 95 G n 1 96 C n 1 97 G n 1 98 G n 1 99 G n 1 100 U n 1 101 A n 1 102 G n 1 103 G n 1 104 U n 1 105 U n 1 106 U n 1 107 CCC n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 107 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Syntrophothermus lipocalidus DSM 12680' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 643648 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'in vitro transcription vector pT7-TP(deltai)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 905931 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6DLS _struct_ref.pdbx_db_accession 6DLS _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6DLS _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 107 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6DLS _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 107 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CCC 'RNA linking' n ;CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; ? 'C9 H13 N3 O10 P2' 385.161 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GTP non-polymer n "GUANOSINE-5'-TRIPHOSPHATE" ? 'C10 H16 N5 O14 P3' 523.180 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PRP D-saccharide n 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose ;ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID; 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribose; 1-O-pyrophosphono-5-O-phosphono-D-ribose; 1-O-pyrophosphono-5-O-phosphono-ribose ; 'C5 H13 O14 P3' 390.070 TL non-polymer . 'THALLIUM (I) ION' ? 'Tl 1' 204.383 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DLS _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.54 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 65.28 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M NH4-acetate, 0.1 M HEPES-KOH pH 7.4, and 45% 2-methyl-2,4-pentanediol (v/v)' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS EIGER X 16M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-10-04 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS-II BEAMLINE 17-ID-2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9795 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 17-ID-2 _diffrn_source.pdbx_synchrotron_site NSLS-II # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 6DLS _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.885 _reflns.d_resolution_low 20.0 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 19937 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 97.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.8 _reflns.pdbx_Rmerge_I_obs 0.098 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 28.2 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.050 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.726 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.9 _reflns_shell.d_res_low 19.35 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.826 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.454 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DLS _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.885 _refine.ls_d_res_low 19.350 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19937 _refine.ls_number_reflns_R_free 1974 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 92.66 _refine.ls_percent_reflns_R_free 9.90 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2097 _refine.ls_R_factor_R_free 0.2348 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2070 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.41 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 30.81 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.42 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2310 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 2337 _refine_hist.d_res_high 2.885 _refine_hist.d_res_low 19.350 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.010 ? 2606 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.400 ? 4070 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 19.460 ? 1298 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.055 ? 537 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.008 ? 108 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 2.8847 2.9566 . . 103 1064 76.00 . . . 0.4409 . 0.4312 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.9566 3.0363 . . 115 1197 87.00 . . . 0.4470 . 0.3857 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.0363 3.1253 . . 167 1245 90.00 . . . 0.3957 . 0.3490 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.1253 3.2257 . . 141 1275 93.00 . . . 0.3712 . 0.3120 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.2257 3.3404 . . 151 1314 96.00 . . . 0.3658 . 0.2571 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.3404 3.4734 . . 151 1304 96.00 . . . 0.3008 . 0.2342 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.4734 3.6305 . . 159 1353 98.00 . . . 0.3069 . 0.2282 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.6305 3.8205 . . 141 1363 97.00 . . . 0.2420 . 0.2254 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.8205 4.0579 . . 160 1317 96.00 . . . 0.2285 . 0.2148 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.0579 4.3678 . . 129 1341 96.00 . . . 0.2516 . 0.2035 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.3678 4.8013 . . 138 1320 94.00 . . . 0.2534 . 0.2032 . . . . . . . . . . 'X-RAY DIFFRACTION' 4.8013 5.4822 . . 146 1264 93.00 . . . 0.1814 . 0.1781 . . . . . . . . . . 'X-RAY DIFFRACTION' 5.4822 6.8556 . . 129 1330 94.00 . . . 0.2206 . 0.1801 . . . . . . . . . . 'X-RAY DIFFRACTION' 6.8556 19.3503 . . 144 1276 91.00 . . . 0.1570 . 0.1587 . . . . . . . . . . # _struct.entry_id 6DLS _struct.title 'PRPP Riboswitch bound to PRPP, thallium acetate soaked structure' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DLS _struct_keywords.text 'riboswitch, non-coding, RNA, yKKC' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 5 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GTP 1 "O3'" ? ? ? 1_555 A G 2 P ? ? A GTP 1 A G 2 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale2 covale both ? A U 106 "O3'" ? ? ? 1_555 A CCC 107 P ? ? A U 106 A CCC 107 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? A C 30 OP1 ? ? ? 1_555 C TL . TL ? ? A C 30 A TL 202 2_555 ? ? ? ? ? ? ? 2.913 ? ? metalc2 metalc ? ? A G 31 N7 ? ? ? 1_555 C TL . TL ? ? A G 31 A TL 202 2_555 ? ? ? ? ? ? ? 2.541 ? ? metalc3 metalc ? ? A G 48 OP1 ? ? ? 1_555 D MG . MG ? ? A G 48 A MG 203 1_555 ? ? ? ? ? ? ? 2.131 ? ? metalc4 metalc ? ? A G 48 OP2 ? ? ? 1_555 E MG . MG ? ? A G 48 A MG 204 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc5 metalc ? ? A U 49 O2 ? ? ? 1_555 F MG . MG ? ? A U 49 A MG 205 1_555 ? ? ? ? ? ? ? 2.314 ? ? metalc6 metalc ? ? A C 75 OP2 ? ? ? 1_555 F MG . MG ? ? A C 75 A MG 205 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc7 metalc ? ? A U 84 "O3'" ? ? ? 1_555 C TL . TL ? ? A U 84 A TL 202 1_555 ? ? ? ? ? ? ? 2.794 ? ? metalc8 metalc ? ? A U 84 "O2'" ? ? ? 1_555 C TL . TL ? ? A U 84 A TL 202 1_555 ? ? ? ? ? ? ? 3.288 ? ? metalc9 metalc ? ? A A 85 OP1 ? ? ? 1_555 C TL . TL ? ? A A 85 A TL 202 1_555 ? ? ? ? ? ? ? 3.171 ? ? metalc10 metalc ? ? A A 85 N7 ? ? ? 1_555 C TL . TL ? ? A A 85 A TL 202 1_555 ? ? ? ? ? ? ? 3.252 ? ? metalc11 metalc ? ? A C 90 OP1 ? ? ? 1_555 D MG . MG ? ? A C 90 A MG 203 1_555 ? ? ? ? ? ? ? 2.242 ? ? metalc12 metalc ? ? A C 91 OP2 ? ? ? 1_555 D MG . MG ? ? A C 91 A MG 203 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc13 metalc ? ? A C 91 OP1 ? ? ? 1_555 E MG . MG ? ? A C 91 A MG 204 1_555 ? ? ? ? ? ? ? 2.344 ? ? metalc14 metalc ? ? B PRP . O2P A ? ? 1_555 F MG . MG ? ? A PRP 201 A MG 205 1_555 ? ? ? ? ? ? ? 2.083 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 A CCC 107 N3 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 A CCC 107 O2 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 A CCC 107 N4 ? ? A G 2 A CCC 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 106 N3 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 106 O4 ? ? A A 3 A U 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 4 N1 ? ? ? 1_555 A U 105 N3 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 4 N6 ? ? ? 1_555 A U 105 O4 ? ? A A 4 A U 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 104 N3 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 104 O4 ? ? A A 5 A U 104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 6 N2 ? ? ? 1_555 A A 72 N1 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog11 hydrog ? ? A G 6 N3 ? ? ? 1_555 A A 72 N6 ? ? A G 6 A A 72 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog12 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 7 A A 55 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 54 N3 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 54 O2 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 54 N4 ? ? A G 8 A C 54 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A U 9 N3 ? ? ? 1_555 A A 53 N1 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A U 9 O4 ? ? ? 1_555 A A 53 N6 ? ? A U 9 A A 53 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 52 N3 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 52 O2 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 52 N4 ? ? A G 10 A C 52 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 11 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 N3 ? ? ? 1_555 A G 50 N1 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 12 N4 ? ? ? 1_555 A G 50 O6 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 12 O2 ? ? ? 1_555 A G 50 N2 ? ? A C 12 A G 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A U 13 N3 ? ? ? 1_555 A A 47 N7 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog28 hydrog ? ? A U 13 O2 ? ? ? 1_555 A A 47 N6 ? ? A U 13 A A 47 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog29 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 46 N3 ? ? A A 14 A A 46 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 45 N3 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 45 O2 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 45 N4 ? ? A G 15 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 88 N3 ? ? A G 15 A A 88 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog34 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 44 N3 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 44 N4 ? ? A G 16 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A U 19 O4 ? ? A G 17 A U 19 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog38 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 43 O4 ? ? A G 17 A U 43 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog39 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 44 O2 ? ? A G 17 A C 44 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog40 hydrog ? ? A G 17 N2 ? ? ? 1_555 A A 85 N1 ? ? A G 17 A A 85 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A U 18 O2 ? ? ? 1_555 A C 20 N4 ? ? A U 18 A C 20 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog42 hydrog ? ? A U 19 O4 ? ? ? 1_555 A U 43 N3 ? ? A U 19 A U 43 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog43 hydrog ? ? A C 20 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A C 20 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 20 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 20 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 37 O6 ? ? A C 21 A G 37 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog47 hydrog ? ? A C 21 N3 ? ? ? 1_555 A G 41 N1 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 21 N4 ? ? ? 1_555 A G 41 O6 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 21 O2 ? ? ? 1_555 A G 41 N2 ? ? A C 21 A G 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A G 22 N1 ? ? ? 1_555 A C 39 N3 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 22 N2 ? ? ? 1_555 A C 39 O2 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 22 O6 ? ? ? 1_555 A C 39 N4 ? ? A G 22 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 22 N2 ? ? ? 1_555 A U 40 O4 ? ? A G 22 A U 40 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? ? hydrog54 hydrog ? ? A C 23 N3 ? ? ? 1_555 A G 36 N1 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 23 N4 ? ? ? 1_555 A G 36 O6 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 23 O2 ? ? ? 1_555 A G 36 N2 ? ? A C 23 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 24 N1 ? ? ? 1_555 A C 35 N3 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A G 24 N2 ? ? ? 1_555 A C 35 O2 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 24 O6 ? ? ? 1_555 A C 35 N4 ? ? A G 24 A C 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 25 O4 ? ? ? 1_555 A A 34 N6 ? ? A U 25 A A 34 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog61 hydrog ? ? A G 26 N1 ? ? ? 1_555 A C 33 N3 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 33 O2 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 26 O6 ? ? ? 1_555 A C 33 N4 ? ? A G 26 A C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 32 N2 ? ? A C 27 A G 32 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog65 hydrog ? ? A U 28 O2 ? ? ? 1_555 A G 31 N1 ? ? A U 28 A G 31 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog66 hydrog ? ? A G 37 N1 ? ? ? 1_555 A G 41 O6 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog67 hydrog ? ? A G 37 N2 ? ? ? 1_555 A G 41 N7 ? ? A G 37 A G 41 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog68 hydrog ? ? A G 48 N2 ? ? ? 1_555 A A 74 N3 ? ? A G 48 A A 74 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog69 hydrog ? ? A G 56 N1 ? ? ? 1_555 A U 71 O2 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 56 O6 ? ? ? 1_555 A U 71 N3 ? ? A G 56 A U 71 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog71 hydrog ? ? A A 57 N1 ? ? ? 1_555 A U 70 N3 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A A 57 N6 ? ? ? 1_555 A U 70 O4 ? ? A A 57 A U 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 58 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 59 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 59 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 59 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 59 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 60 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 60 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 60 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 60 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A A 61 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A A 61 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 61 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A U 62 O2 ? ? ? 1_555 A G 65 N2 ? ? A U 62 A G 65 1_555 ? ? ? ? ? ? 'U-G MISPAIR' ? ? ? hydrog85 hydrog ? ? A C 73 N3 ? ? ? 1_555 A G 94 N1 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A C 73 N4 ? ? ? 1_555 A G 94 O6 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 94 N2 ? ? A C 73 A G 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A C 73 O2 ? ? ? 1_555 A G 103 N2 ? ? A C 73 A G 103 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog89 hydrog ? ? A C 75 N3 ? ? ? 1_555 A G 98 N1 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 75 N4 ? ? ? 1_555 A G 98 O6 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 75 O2 ? ? ? 1_555 A G 98 N2 ? ? A C 75 A G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 76 N3 ? ? ? 1_555 A G 97 N1 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A C 76 N4 ? ? ? 1_555 A G 97 O6 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? A C 76 O2 ? ? ? 1_555 A G 97 N2 ? ? A C 76 A G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? A G 77 N1 ? ? ? 1_555 A C 96 N3 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? A G 77 N2 ? ? ? 1_555 A C 96 O2 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? A G 77 O6 ? ? ? 1_555 A C 96 N4 ? ? A G 77 A C 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? A G 78 O6 ? ? ? 1_555 A G 95 N1 ? ? A G 78 A G 95 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog99 hydrog ? ? A A 79 N1 ? ? ? 1_555 A A 93 N6 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog100 hydrog ? ? A A 79 N6 ? ? ? 1_555 A A 93 N1 ? ? A A 79 A A 93 1_555 ? ? ? ? ? ? TYPE_1_PAIR ? ? ? hydrog101 hydrog ? ? A G 80 N1 ? ? ? 1_555 A C 92 N3 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? A G 80 N2 ? ? ? 1_555 A C 92 O2 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog103 hydrog ? ? A G 80 O6 ? ? ? 1_555 A C 92 N4 ? ? A G 80 A C 92 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? A G 81 N1 ? ? ? 1_555 A C 91 N3 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? A G 81 N2 ? ? ? 1_555 A C 91 O2 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? A G 81 O6 ? ? ? 1_555 A C 91 N4 ? ? A G 81 A C 91 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? A G 82 N1 ? ? ? 1_555 A C 90 N3 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? A G 82 N2 ? ? ? 1_555 A C 90 O2 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? A G 82 O6 ? ? ? 1_555 A C 90 N4 ? ? A G 82 A C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? A A 83 N1 ? ? ? 1_555 A A 88 N6 ? ? A A 83 A A 88 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog111 hydrog ? ? A U 84 N3 ? ? ? 1_555 A A 87 N7 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog112 hydrog ? ? A U 84 O2 ? ? ? 1_555 A A 87 N6 ? ? A U 84 A A 87 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog113 hydrog ? ? A G 99 N2 ? ? ? 1_555 A A 101 N7 ? ? A G 99 A A 101 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _atom_sites.entry_id 6DLS _atom_sites.fract_transf_matrix[1][1] 0.011734 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007562 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010872 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015850 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P TL # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GTP 1 1 1 GTP GTP A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 G 8 8 8 G G A . n A 1 9 U 9 9 9 U U A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 C 12 12 12 C C A . n A 1 13 U 13 13 13 U U A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 G 16 16 16 G G A . n A 1 17 G 17 17 17 G G A . n A 1 18 U 18 18 18 U U A . n A 1 19 U 19 19 19 U U A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 G 22 22 22 G G A . n A 1 23 C 23 23 23 C C A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 C 27 27 27 C C A . n A 1 28 U 28 28 28 U U A . n A 1 29 U 29 29 29 U U A . n A 1 30 C 30 30 30 C C A . n A 1 31 G 31 31 31 G G A . n A 1 32 G 32 32 32 G G A . n A 1 33 C 33 33 33 C C A . n A 1 34 A 34 34 34 A A A . n A 1 35 C 35 35 35 C C A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 A 38 38 38 A A A . n A 1 39 C 39 39 39 C C A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 G 42 42 42 G G A . n A 1 43 U 43 43 43 U U A . n A 1 44 C 44 44 44 C C A . n A 1 45 C 45 45 45 C C A . n A 1 46 A 46 46 46 A A A . n A 1 47 A 47 47 47 A A A . n A 1 48 G 48 48 48 G G A . n A 1 49 U 49 49 49 U U A . n A 1 50 G 50 50 50 G G A . n A 1 51 A 51 51 51 A A A . n A 1 52 C 52 52 52 C C A . n A 1 53 A 53 53 53 A A A . n A 1 54 C 54 54 54 C C A . n A 1 55 A 55 55 55 A A A . n A 1 56 G 56 56 56 G G A . n A 1 57 A 57 57 57 A A A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 C 60 60 60 C C A . n A 1 61 A 61 61 61 A A A . n A 1 62 U 62 62 62 U U A . n A 1 63 U 63 63 63 U U A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 G 67 67 67 G G A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 U 70 70 70 U U A . n A 1 71 U 71 71 71 U U A . n A 1 72 A 72 72 72 A A A . n A 1 73 C 73 73 73 C C A . n A 1 74 A 74 74 74 A A A . n A 1 75 C 75 75 75 C C A . n A 1 76 C 76 76 76 C C A . n A 1 77 G 77 77 77 G G A . n A 1 78 G 78 78 78 G G A . n A 1 79 A 79 79 79 A A A . n A 1 80 G 80 80 80 G G A . n A 1 81 G 81 81 81 G G A . n A 1 82 G 82 82 82 G G A . n A 1 83 A 83 83 83 A A A . n A 1 84 U 84 84 84 U U A . n A 1 85 A 85 85 85 A A A . n A 1 86 G 86 86 86 G G A . n A 1 87 A 87 87 87 A A A . n A 1 88 A 88 88 88 A A A . n A 1 89 G 89 89 89 G G A . n A 1 90 C 90 90 90 C C A . n A 1 91 C 91 91 91 C C A . n A 1 92 C 92 92 92 C C A . n A 1 93 A 93 93 93 A A A . n A 1 94 G 94 94 94 G G A . n A 1 95 G 95 95 95 G G A . n A 1 96 C 96 96 96 C C A . n A 1 97 G 97 97 97 G G A . n A 1 98 G 98 98 98 G G A . n A 1 99 G 99 99 99 G G A . n A 1 100 U 100 100 100 U U A . n A 1 101 A 101 101 101 A A A . n A 1 102 G 102 102 102 G G A . n A 1 103 G 103 103 103 G G A . n A 1 104 U 104 104 104 U U A . n A 1 105 U 105 105 105 U U A . n A 1 106 U 106 106 106 U U A . n A 1 107 CCC 107 107 107 CCC CCC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PRP 1 201 503 PRP PRP A . C 3 TL 1 202 4 TL TL A . D 4 MG 1 203 1 MG MG A . E 4 MG 1 204 2 MG MG A . F 4 MG 1 205 3 MG MG A . G 5 HOH 1 301 15 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 30 ? A C 30 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A G 31 ? A G 31 ? 1_555 89.1 ? 2 OP1 ? A C 30 ? A C 30 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 "O3'" ? A U 84 ? A U 84 ? 1_555 129.5 ? 3 N7 ? A G 31 ? A G 31 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 "O3'" ? A U 84 ? A U 84 ? 1_555 63.6 ? 4 OP1 ? A C 30 ? A C 30 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 "O2'" ? A U 84 ? A U 84 ? 1_555 125.6 ? 5 N7 ? A G 31 ? A G 31 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 "O2'" ? A U 84 ? A U 84 ? 1_555 60.3 ? 6 "O3'" ? A U 84 ? A U 84 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 "O2'" ? A U 84 ? A U 84 ? 1_555 4.3 ? 7 OP1 ? A C 30 ? A C 30 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 OP1 ? A A 85 ? A A 85 ? 1_555 130.9 ? 8 N7 ? A G 31 ? A G 31 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 OP1 ? A A 85 ? A A 85 ? 1_555 66.8 ? 9 "O3'" ? A U 84 ? A U 84 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 OP1 ? A A 85 ? A A 85 ? 1_555 3.2 ? 10 "O2'" ? A U 84 ? A U 84 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 OP1 ? A A 85 ? A A 85 ? 1_555 7.1 ? 11 OP1 ? A C 30 ? A C 30 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A A 85 ? A A 85 ? 1_555 124.4 ? 12 N7 ? A G 31 ? A G 31 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A A 85 ? A A 85 ? 1_555 56.2 ? 13 "O3'" ? A U 84 ? A U 84 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A A 85 ? A A 85 ? 1_555 7.6 ? 14 "O2'" ? A U 84 ? A U 84 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A A 85 ? A A 85 ? 1_555 4.1 ? 15 OP1 ? A A 85 ? A A 85 ? 1_555 TL ? C TL . ? A TL 202 ? 2_555 N7 ? A A 85 ? A A 85 ? 1_555 10.8 ? 16 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP1 ? A C 90 ? A C 90 ? 1_555 89.2 ? 17 OP1 ? A G 48 ? A G 48 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 89.4 ? 18 OP1 ? A C 90 ? A C 90 ? 1_555 MG ? D MG . ? A MG 203 ? 1_555 OP2 ? A C 91 ? A C 91 ? 1_555 79.2 ? 19 OP2 ? A G 48 ? A G 48 ? 1_555 MG ? E MG . ? A MG 204 ? 1_555 OP1 ? A C 91 ? A C 91 ? 1_555 66.1 ? 20 O2 ? A U 49 ? A U 49 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 OP2 ? A C 75 ? A C 75 ? 1_555 79.5 ? 21 O2 ? A U 49 ? A U 49 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O2P A B PRP . ? A PRP 201 ? 1_555 71.5 ? 22 OP2 ? A C 75 ? A C 75 ? 1_555 MG ? F MG . ? A MG 205 ? 1_555 O2P A B PRP . ? A PRP 201 ? 1_555 99.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-11-14 2 'Structure model' 1 1 2020-01-01 3 'Structure model' 1 2 2020-07-29 4 'Structure model' 1 3 2022-04-27 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 3 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Author supporting evidence' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Structure summary' 6 4 'Structure model' Advisory 7 4 'Structure model' 'Database references' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_database_PDB_obs_spr 3 3 'Structure model' chem_comp 4 3 'Structure model' entity 5 3 'Structure model' pdbx_chem_comp_identifier 6 3 'Structure model' pdbx_entity_nonpoly 7 3 'Structure model' pdbx_struct_conn_angle 8 3 'Structure model' struct_conn 9 3 'Structure model' struct_site 10 3 'Structure model' struct_site_gen 11 4 'Structure model' chem_comp 12 4 'Structure model' database_2 13 4 'Structure model' pdbx_database_PDB_obs_spr # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 3 'Structure model' '_chem_comp.mon_nstd_flag' 3 3 'Structure model' '_chem_comp.name' 4 3 'Structure model' '_chem_comp.type' 5 3 'Structure model' '_entity.pdbx_description' 6 3 'Structure model' '_pdbx_entity_nonpoly.name' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 16 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 17 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_symmetry' 18 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 19 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 20 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 21 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 3 'Structure model' '_pdbx_struct_conn_angle.value' 26 3 'Structure model' '_struct_conn.conn_type_id' 27 3 'Structure model' '_struct_conn.id' 28 3 'Structure model' '_struct_conn.pdbx_dist_value' 29 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 30 3 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 31 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 32 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 33 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 34 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 35 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 36 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 37 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 38 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 39 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 40 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 41 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 42 3 'Structure model' '_struct_conn.ptnr2_label_seq_id' 43 3 'Structure model' '_struct_conn.ptnr2_symmetry' 44 4 'Structure model' '_chem_comp.pdbx_synonyms' 45 4 'Structure model' '_database_2.pdbx_DOI' 46 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.12_2829: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A U 63 ? ? P A C 64 ? ? 1.516 1.607 -0.091 0.012 Y 2 1 "O3'" A G 94 ? ? P A G 95 ? ? 1.528 1.607 -0.079 0.012 Y 3 1 "O3'" A G 95 ? ? P A C 96 ? ? 1.533 1.607 -0.074 0.012 Y 4 1 "O3'" A C 96 ? ? P A G 97 ? ? 1.516 1.607 -0.091 0.012 Y 5 1 "O3'" A G 97 ? ? P A G 98 ? ? 1.515 1.607 -0.092 0.012 Y # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DLS 'double helix' 6DLS 'a-form double helix' 6DLS 'hairpin loop' 6DLS tetraloop 6DLS 'bulge loop' 6DLS 'mismatched base pair' 6DLS 'quadruple helix' 6DLS 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 A CCC 107 1_555 -0.657 0.339 0.377 8.106 -1.662 -7.770 1 A_G2:CCC107_A A 2 ? A 107 ? 19 1 1 A A 3 1_555 A U 106 1_555 -0.190 -0.069 0.325 4.030 -8.049 -11.293 2 A_A3:U106_A A 3 ? A 106 ? 20 1 1 A A 4 1_555 A U 105 1_555 -0.081 -0.162 0.404 0.717 -14.067 -0.276 3 A_A4:U105_A A 4 ? A 105 ? 20 1 1 A A 5 1_555 A U 104 1_555 -0.012 -0.130 0.801 5.402 -23.854 0.257 4 A_A5:U104_A A 5 ? A 104 ? 20 1 1 A A 72 1_555 A G 6 1_555 -3.827 4.109 -1.089 30.489 -2.270 66.001 5 A_A72:G6_A A 72 ? A 6 ? 10 6 1 A C 73 1_555 A G 94 1_555 -0.422 0.255 -0.177 28.059 -23.186 -3.456 6 A_C73:G94_A A 73 ? A 94 ? 19 1 1 A A 74 1_555 A G 48 1_555 2.783 7.254 -1.626 48.249 10.277 150.642 7 A_A74:G48_A A 74 ? A 48 ? ? 6 1 A G 31 1_555 A U 28 1_555 -1.407 4.982 -2.317 24.860 5.648 90.343 8 A_G31:U28_A A 31 ? A 28 ? ? 6 1 A G 32 1_555 A C 27 1_555 0.767 0.391 0.374 5.734 -10.397 13.405 9 A_G32:C27_A A 32 ? A 27 ? ? 1 1 A C 33 1_555 A G 26 1_555 1.063 -0.544 -0.360 16.736 -34.738 -9.536 10 A_C33:G26_A A 33 ? A 26 ? 19 1 1 A A 34 1_555 A U 25 1_555 0.920 0.824 -0.407 0.822 -14.604 -43.687 11 A_A34:U25_A A 34 ? A 25 ? ? ? 1 A C 35 1_555 A G 24 1_555 -0.471 0.156 0.034 7.960 -12.913 -8.080 12 A_C35:G24_A A 35 ? A 24 ? 19 1 1 A G 36 1_555 A C 23 1_555 -0.202 -0.250 0.424 -2.179 -19.401 -7.110 13 A_G36:C23_A A 36 ? A 23 ? 19 1 1 A C 39 1_555 A G 22 1_555 -0.254 0.295 0.775 -6.191 -5.758 11.319 14 A_C39:G22_A A 39 ? A 22 ? 19 1 1 A G 41 1_555 A C 21 1_555 -0.421 -0.274 -0.743 -3.294 -10.538 -0.744 15 A_G41:C21_A A 41 ? A 21 ? 19 1 1 A G 42 1_555 A C 20 1_555 -0.195 -0.099 -0.799 -13.933 1.925 -8.755 16 A_G42:C20_A A 42 ? A 20 ? 19 1 1 A U 43 1_555 A U 19 1_555 2.133 -0.475 -1.293 -20.904 -5.422 -28.584 17 A_U43:U19_A A 43 ? A 19 ? ? ? 1 A G 17 1_555 A A 85 1_555 4.057 3.919 1.420 -31.579 -46.247 84.309 18 A_G17:A85_A A 17 ? A 85 ? ? ? 1 A C 44 1_555 A G 16 1_555 -0.436 0.283 -0.994 23.161 -23.681 1.395 19 A_C44:G16_A A 44 ? A 16 ? 19 1 1 A C 45 1_555 A G 15 1_555 0.276 -0.305 -0.070 7.763 -7.523 0.398 20 A_C45:G15_A A 45 ? A 15 ? 19 1 1 A A 46 1_555 A A 14 1_555 6.120 -3.840 -0.371 1.103 -12.430 -21.253 21 A_A46:A14_A A 46 ? A 14 ? ? 10 1 A A 47 1_555 A U 13 1_555 -4.095 -2.182 -1.062 11.443 -20.089 -88.114 22 A_A47:U13_A A 47 ? A 13 ? 24 4 1 A G 50 1_555 A C 12 1_555 0.367 -0.168 0.214 -4.052 -10.987 -0.342 23 A_G50:C12_A A 50 ? A 12 ? 19 1 1 A A 51 1_555 A U 11 1_555 -0.018 -0.152 -0.066 4.372 -9.328 -6.689 24 A_A51:U11_A A 51 ? A 11 ? 20 1 1 A C 52 1_555 A G 10 1_555 0.351 -0.321 0.025 6.322 -13.418 -6.000 25 A_C52:G10_A A 52 ? A 10 ? 19 1 1 A A 53 1_555 A U 9 1_555 0.542 0.133 -0.019 -3.223 -6.038 -5.383 26 A_A53:U9_A A 53 ? A 9 ? 20 1 1 A C 54 1_555 A G 8 1_555 0.225 -0.071 0.072 0.924 -7.632 -0.174 27 A_C54:G8_A A 54 ? A 8 ? 19 1 1 A A 55 1_555 A U 7 1_555 0.243 0.178 1.202 13.228 4.430 1.435 28 A_A55:U7_A A 55 ? A 7 ? 20 1 1 A G 56 1_555 A U 71 1_555 -1.967 -0.626 -0.040 0.878 -6.656 -4.347 29 A_G56:U71_A A 56 ? A 71 ? 28 1 1 A A 57 1_555 A U 70 1_555 0.301 -0.293 -0.005 -0.359 -13.335 -3.083 30 A_A57:U70_A A 57 ? A 70 ? 20 1 1 A C 58 1_555 A G 69 1_555 -0.419 -0.278 -0.123 2.945 -15.538 -1.227 31 A_C58:G69_A A 58 ? A 69 ? 19 1 1 A G 59 1_555 A C 68 1_555 0.246 -0.177 0.009 -3.838 -8.123 3.357 32 A_G59:C68_A A 59 ? A 68 ? 19 1 1 A C 60 1_555 A G 67 1_555 0.258 0.139 -0.159 8.768 -11.398 2.004 33 A_C60:G67_A A 60 ? A 67 ? 19 1 1 A A 61 1_555 A U 66 1_555 0.277 0.011 -0.136 3.165 -3.513 -0.403 34 A_A61:U66_A A 61 ? A 66 ? 20 1 1 A U 62 1_555 A G 65 1_555 -0.088 -6.120 0.548 -16.915 15.309 -123.229 35 A_U62:G65_A A 62 ? A 65 ? ? 6 1 A A 87 1_555 A U 84 1_555 -4.446 -2.275 -1.226 -22.316 -12.986 -100.228 36 A_A87:U84_A A 87 ? A 84 ? 24 4 1 A A 88 1_555 A A 83 1_555 -5.066 0.536 -0.061 7.967 -6.133 -96.705 37 A_A88:A83_A A 88 ? A 83 ? ? ? 1 A C 90 1_555 A G 82 1_555 -0.393 -0.368 -0.285 20.814 -8.567 -4.013 38 A_C90:G82_A A 90 ? A 82 ? 19 1 1 A C 91 1_555 A G 81 1_555 -0.273 -0.211 -0.115 4.569 -9.818 2.255 39 A_C91:G81_A A 91 ? A 81 ? 19 1 1 A C 92 1_555 A G 80 1_555 -0.186 0.013 -0.144 1.384 -3.173 0.611 40 A_C92:G80_A A 92 ? A 80 ? 19 1 1 A A 93 1_555 A A 79 1_555 -1.226 -1.553 0.361 10.386 -7.462 178.826 41 A_A93:A79_A A 93 ? A 79 ? 1 2 1 A G 95 1_555 A G 78 1_555 3.271 1.481 -0.853 15.139 -2.418 -62.789 42 A_G95:G78_A A 95 ? A 78 ? ? 1 1 A C 96 1_555 A G 77 1_555 -0.581 -0.065 -0.100 13.411 -9.477 -0.037 43 A_C96:G77_A A 96 ? A 77 ? 19 1 1 A G 97 1_555 A C 76 1_555 0.613 -0.319 -0.083 -5.687 -13.333 -3.927 44 A_G97:C76_A A 97 ? A 76 ? 19 1 1 A G 98 1_555 A C 75 1_555 0.528 0.027 -0.684 -24.050 -24.800 -1.061 45 A_G98:C75_A A 98 ? A 75 ? 19 1 1 A G 99 1_555 A A 101 1_555 7.199 2.628 0.417 -55.403 8.213 7.805 46 A_G99:A101_A A 99 ? A 101 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 A CCC 107 1_555 A A 3 1_555 A U 106 1_555 -0.306 -1.646 3.414 -2.069 9.821 32.523 -4.347 0.200 2.825 17.036 3.589 33.996 1 AA_G2A3:U106CCC107_AA A 2 ? A 107 ? A 3 ? A 106 ? 1 A A 3 1_555 A U 106 1_555 A A 4 1_555 A U 105 1_555 0.496 -1.405 3.140 -0.119 6.427 37.537 -2.908 -0.775 2.868 9.898 0.183 38.064 2 AA_A3A4:U105U106_AA A 3 ? A 106 ? A 4 ? A 105 ? 1 A A 4 1_555 A U 105 1_555 A A 5 1_555 A U 104 1_555 0.547 -1.739 2.899 -0.370 5.846 29.381 -4.374 -1.122 2.507 11.383 0.720 29.947 3 AA_A4A5:U104U105_AA A 4 ? A 105 ? A 5 ? A 104 ? 1 A A 5 1_555 A U 104 1_555 A A 72 1_555 A G 6 1_555 0.548 -0.267 3.752 16.624 6.131 101.288 -0.276 -0.067 3.775 3.944 -10.693 102.405 4 AA_A5A72:G6U104_AA A 5 ? A 104 ? A 72 ? A 6 ? 1 A A 72 1_555 A G 6 1_555 A C 73 1_555 A G 94 1_555 1.252 1.424 2.439 1.552 -6.408 79.670 1.234 -0.945 2.358 -4.994 -1.209 79.897 5 AA_A72C73:G94G6_AA A 72 ? A 6 ? A 73 ? A 94 ? 1 A C 73 1_555 A G 94 1_555 A A 74 1_555 A G 48 1_555 -0.076 -2.804 4.841 -10.994 6.427 -21.125 3.420 -5.570 4.851 -15.813 -27.049 -24.629 6 AA_C73A74:G48G94_AA A 73 ? A 94 ? A 74 ? A 48 ? 1 A G 31 1_555 A U 28 1_555 A G 32 1_555 A C 27 1_555 2.998 2.519 0.256 -109.497 129.837 -87.272 -1.334 1.442 0.183 -66.118 -55.760 -172.655 7 AA_G31G32:C27U28_AA A 31 ? A 28 ? A 32 ? A 27 ? 1 A G 32 1_555 A C 27 1_555 A C 33 1_555 A G 26 1_555 -0.749 -1.202 3.249 5.566 -5.797 30.176 -1.124 2.459 3.232 -10.894 -10.460 31.204 8 AA_G32C33:G26C27_AA A 32 ? A 27 ? A 33 ? A 26 ? 1 A C 33 1_555 A G 26 1_555 A A 34 1_555 A U 25 1_555 -2.565 -2.769 3.963 -3.358 31.743 35.490 -5.899 2.931 1.387 42.939 4.542 47.387 9 AA_C33A34:U25G26_AA A 33 ? A 26 ? A 34 ? A 25 ? 1 A A 34 1_555 A U 25 1_555 A C 35 1_555 A G 24 1_555 1.543 -2.271 3.178 0.654 4.894 27.801 -5.701 -3.024 2.780 10.084 -1.348 28.228 10 AA_A34C35:G24U25_AA A 34 ? A 25 ? A 35 ? A 24 ? 1 A C 35 1_555 A G 24 1_555 A G 36 1_555 A C 23 1_555 0.489 -1.711 3.293 0.417 15.306 36.015 -4.239 -0.685 2.404 23.491 -0.640 39.035 11 AA_C35G36:C23G24_AA A 35 ? A 24 ? A 36 ? A 23 ? 1 A G 36 1_555 A C 23 1_555 A C 39 1_555 A G 22 1_555 -1.445 -1.753 3.150 -2.486 5.756 48.705 -2.520 1.563 3.003 6.946 3.000 49.083 12 AA_G36C39:G22C23_AA A 36 ? A 23 ? A 39 ? A 22 ? 1 A C 39 1_555 A G 22 1_555 A G 41 1_555 A C 21 1_555 -2.928 -1.253 3.082 13.185 11.057 48.926 -2.035 4.070 1.975 12.896 -15.379 51.688 13 AA_C39G41:C21G22_AA A 39 ? A 22 ? A 41 ? A 21 ? 1 A G 41 1_555 A C 21 1_555 A G 42 1_555 A C 20 1_555 -1.644 -1.727 3.483 -7.714 8.664 39.661 -3.440 1.454 3.300 12.451 11.085 41.257 14 AA_G41G42:C20C21_AA A 41 ? A 21 ? A 42 ? A 20 ? 1 A G 42 1_555 A C 20 1_555 A U 43 1_555 A U 19 1_555 -1.019 -2.737 3.893 6.348 8.857 36.507 -5.404 2.427 2.962 13.766 -9.866 38.046 15 AA_G42U43:U19C20_AA A 42 ? A 20 ? A 43 ? A 19 ? 1 A U 43 1_555 A U 19 1_555 A G 17 1_555 A A 85 1_555 1.587 4.047 -1.996 119.512 112.887 -176.195 -2.000 0.769 -2.124 -56.447 59.759 -179.484 16 AA_U43G17:A85U19_AA A 43 ? A 19 ? A 17 ? A 85 ? 1 A G 17 1_555 A A 85 1_555 A C 44 1_555 A G 16 1_555 4.137 -1.430 1.484 158.815 37.534 89.812 -0.964 -1.043 3.658 19.330 -81.792 168.116 17 AA_G17C44:G16A85_AA A 17 ? A 85 ? A 44 ? A 16 ? 1 A C 44 1_555 A G 16 1_555 A C 45 1_555 A G 15 1_555 -0.063 -1.961 3.771 -7.360 15.051 36.383 -4.686 -0.795 2.745 22.686 11.093 39.936 18 AA_C44C45:G15G16_AA A 44 ? A 16 ? A 45 ? A 15 ? 1 A C 45 1_555 A G 15 1_555 A A 46 1_555 A A 14 1_555 -1.696 -1.310 3.719 5.099 12.193 54.856 -2.132 2.108 3.228 13.024 -5.446 56.305 19 AA_C45A46:A14G15_AA A 45 ? A 15 ? A 46 ? A 14 ? 1 A A 46 1_555 A A 14 1_555 A A 47 1_555 A U 13 1_555 -4.138 -0.018 3.182 -4.699 10.937 -3.912 -7.966 -22.419 -0.540 -66.036 -28.368 -12.528 20 AA_A46A47:U13A14_AA A 46 ? A 14 ? A 47 ? A 13 ? 1 A A 47 1_555 A U 13 1_555 A G 50 1_555 A C 12 1_555 2.489 -2.200 3.562 -2.331 0.293 84.382 -1.645 -1.912 3.499 0.218 1.735 84.409 21 AA_A47G50:C12U13_AA A 47 ? A 13 ? A 50 ? A 12 ? 1 A G 50 1_555 A C 12 1_555 A A 51 1_555 A U 11 1_555 -1.180 -2.396 2.985 0.301 6.530 27.469 -6.173 2.478 2.351 13.510 -0.622 28.221 22 AA_G50A51:U11C12_AA A 50 ? A 12 ? A 51 ? A 11 ? 1 A A 51 1_555 A U 11 1_555 A C 52 1_555 A G 10 1_555 0.530 -1.581 3.279 2.289 3.737 32.780 -3.399 -0.552 3.113 6.585 -4.033 33.064 23 AA_A51C52:G10U11_AA A 51 ? A 11 ? A 52 ? A 10 ? 1 A C 52 1_555 A G 10 1_555 A A 53 1_555 A U 9 1_555 0.271 -1.764 3.560 3.094 7.985 30.228 -4.800 0.096 3.019 14.940 -5.788 31.390 24 AA_C52A53:U9G10_AA A 52 ? A 10 ? A 53 ? A 9 ? 1 A A 53 1_555 A U 9 1_555 A C 54 1_555 A G 8 1_555 0.619 -1.677 3.078 2.941 3.277 27.510 -4.206 -0.638 2.911 6.836 -6.135 27.854 25 AA_A53C54:G8U9_AA A 53 ? A 9 ? A 54 ? A 8 ? 1 A C 54 1_555 A G 8 1_555 A A 55 1_555 A U 7 1_555 0.848 -2.535 2.527 -7.768 -0.769 28.357 -4.873 -2.920 2.286 -1.534 15.489 29.391 26 AA_C54A55:U7G8_AA A 54 ? A 8 ? A 55 ? A 7 ? 1 A A 55 1_555 A U 7 1_555 A G 56 1_555 A U 71 1_555 2.874 -1.312 3.701 5.710 2.319 55.779 -1.549 -2.677 3.901 2.471 -6.083 56.091 27 AA_A55G56:U71U7_AA A 55 ? A 7 ? A 56 ? A 71 ? 1 A G 56 1_555 A U 71 1_555 A A 57 1_555 A U 70 1_555 -0.715 -1.400 3.317 -8.340 9.976 37.937 -3.174 0.100 2.958 14.822 12.392 40.026 28 AA_G56A57:U70U71_AA A 56 ? A 71 ? A 57 ? A 70 ? 1 A A 57 1_555 A U 70 1_555 A C 58 1_555 A G 69 1_555 0.029 -1.346 3.112 -2.166 3.288 32.305 -2.936 -0.404 2.956 5.882 3.875 32.537 29 AA_A57C58:G69U70_AA A 57 ? A 70 ? A 58 ? A 69 ? 1 A C 58 1_555 A G 69 1_555 A G 59 1_555 A C 68 1_555 -0.183 -1.745 3.363 -2.181 8.471 33.327 -4.224 -0.019 2.853 14.463 3.724 34.424 30 AA_C58G59:C68G69_AA A 58 ? A 69 ? A 59 ? A 68 ? 1 A G 59 1_555 A C 68 1_555 A C 60 1_555 A G 67 1_555 0.078 -0.872 3.016 1.735 0.723 34.893 -1.553 0.111 2.998 1.205 -2.890 34.942 31 AA_G59C60:G67C68_AA A 59 ? A 68 ? A 60 ? A 67 ? 1 A C 60 1_555 A G 67 1_555 A A 61 1_555 A U 66 1_555 0.285 -1.779 3.341 3.396 5.912 29.239 -4.621 0.129 2.946 11.514 -6.614 30.007 32 AA_C60A61:U66G67_AA A 60 ? A 67 ? A 61 ? A 66 ? 1 A A 61 1_555 A U 66 1_555 A U 62 1_555 A G 65 1_555 -1.331 -0.724 4.055 13.691 13.812 100.494 -0.718 1.106 3.814 8.924 -8.846 101.857 33 AA_A61U62:G65U66_AA A 61 ? A 66 ? A 62 ? A 65 ? 1 A A 87 1_555 A U 84 1_555 A A 88 1_555 A A 83 1_555 -0.744 -0.471 2.558 -8.042 -6.358 27.629 0.204 0.034 2.703 -12.770 16.152 29.435 34 AA_A87A88:A83U84_AA A 87 ? A 84 ? A 88 ? A 83 ? 1 A A 88 1_555 A A 83 1_555 A C 90 1_555 A G 82 1_555 3.376 -1.994 2.961 1.235 -1.106 68.929 -1.724 -2.940 3.041 -0.977 -1.091 68.947 35 AA_A88C90:G82A83_AA A 88 ? A 83 ? A 90 ? A 82 ? 1 A C 90 1_555 A G 82 1_555 A C 91 1_555 A G 81 1_555 0.266 -2.035 3.717 -3.717 7.624 38.075 -4.041 -0.882 3.227 11.512 5.613 38.974 36 AA_C90C91:G81G82_AA A 90 ? A 82 ? A 91 ? A 81 ? 1 A C 91 1_555 A G 81 1_555 A C 92 1_555 A G 80 1_555 -0.028 -2.107 3.301 2.328 5.060 29.502 -5.063 0.511 2.897 9.825 -4.521 30.012 37 AA_C91C92:G80G81_AA A 91 ? A 81 ? A 92 ? A 80 ? 1 A C 92 1_555 A G 80 1_555 A A 93 1_555 A A 79 1_555 -0.302 -3.543 0.783 -148.758 93.666 -59.432 1.372 -0.787 1.806 -47.398 -75.277 -176.345 38 AA_C92A93:A79G80_AA A 92 ? A 80 ? A 93 ? A 79 ? 1 A A 93 1_555 A A 79 1_555 A G 95 1_555 A G 78 1_555 -1.852 -3.101 0.615 111.782 -131.524 177.708 -1.546 0.930 0.638 -65.762 -55.892 179.852 39 AA_A93G95:G78A79_AA A 93 ? A 79 ? A 95 ? A 78 ? 1 A G 95 1_555 A G 78 1_555 A C 96 1_555 A G 77 1_555 2.719 -2.474 3.104 -7.287 5.233 24.502 -6.566 -7.532 1.683 11.834 16.480 26.069 40 AA_G95C96:G77G78_AA A 95 ? A 78 ? A 96 ? A 77 ? 1 A C 96 1_555 A G 77 1_555 A G 97 1_555 A C 76 1_555 0.044 -1.997 3.738 -3.817 8.859 40.009 -3.881 -0.510 3.226 12.725 5.483 41.109 41 AA_C96G97:C76G77_AA A 96 ? A 77 ? A 97 ? A 76 ? 1 A G 97 1_555 A C 76 1_555 A G 98 1_555 A C 75 1_555 0.187 -2.203 3.758 6.609 12.544 32.604 -5.524 0.699 2.738 21.142 -11.139 35.477 42 AA_G97G98:C75C76_AA A 97 ? A 76 ? A 98 ? A 75 ? 1 A G 98 1_555 A C 75 1_555 A G 99 1_555 A A 101 1_555 0.424 -2.263 3.132 11.416 11.094 48.588 -3.328 0.226 2.621 13.082 -13.461 50.978 43 AA_G98G99:A101C75_AA A 98 ? A 75 ? A 99 ? A 101 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' R01GM112940 1 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' F31GM119357 2 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' T32GM88118 3 # _pdbx_chem_comp_identifier.comp_id PRP _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1.0 _pdbx_chem_comp_identifier.identifier a-D-Ribf1PO35PO3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id PRP _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id PRP _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose PRP 3 'THALLIUM (I) ION' TL 4 'MAGNESIUM ION' MG 5 water HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details ? #