data_6DN1 # _entry.id 6DN1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DN1 pdb_00006dn1 10.2210/pdb6dn1/pdb WWPDB D_1000234920 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DN1 _pdbx_database_status.recvd_initial_deposition_date 2018-06-05 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Vicens, Q.' 1 ? 'Mondragon, E.' 2 ? 'Reyes, F.E.' 3 ? 'Berman, J.' 4 ? 'Kaur, H.' 5 ? 'Kells, K.' 6 ? 'Wickens, P.' 7 ? 'Wilson, J.' 8 ? 'Gadwood, R.' 9 ? 'Schostarez, H.' 10 ? 'Suto, R.K.' 11 ? 'Coish, P.' 12 ? 'Blount, K.F.' 13 ? 'Batey, R.T.' 14 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'ACS Chem. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1554-8937 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 13 _citation.language ? _citation.page_first 2908 _citation.page_last 2919 _citation.title 'Structure-Activity Relationship of Flavin Analogues That Target the Flavin Mononucleotide Riboswitch.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acschembio.8b00533 _citation.pdbx_database_id_PubMed 30107111 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Vicens, Q.' 1 ? primary 'Mondragon, E.' 2 ? primary 'Reyes, F.E.' 3 ? primary 'Coish, P.' 4 ? primary 'Aristoff, P.' 5 ? primary 'Berman, J.' 6 ? primary 'Kaur, H.' 7 ? primary 'Kells, K.W.' 8 ? primary 'Wickens, P.' 9 ? primary 'Wilson, J.' 10 ? primary 'Gadwood, R.C.' 11 ? primary 'Schostarez, H.J.' 12 ? primary 'Suto, R.K.' 13 ? primary 'Blount, K.F.' 14 ? primary 'Batey, R.T.' 15 ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6DN1 _cell.details ? _cell.formula_units_Z ? _cell.length_a 74.440 _cell.length_a_esd ? _cell.length_b 74.440 _cell.length_b_esd ? _cell.length_c 140.710 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 6 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DN1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA RIBOSWITCH' 17415.365 1 ? ? ? ? 2 polymer syn 'RNA (57-MER)' 18501.041 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 4 non-polymer syn '10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium' 440.515 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 water nat water 18.015 28 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU GGAUCUUCGGGGCAGGGUGAAAUUCCCGACCGGUGGUAUAGUCCACGAAUCCAU X ? 2 polyribonucleotide no no GGAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG GGAUUGAUUUGGUGAAAUUCCAAAACCGACAGUAGAGUCUGGAUGAGAGAAGAUUCG Z ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 G n 1 12 G n 1 13 C n 1 14 A n 1 15 G n 1 16 G n 1 17 G n 1 18 U n 1 19 G n 1 20 A n 1 21 A n 1 22 A n 1 23 U n 1 24 U n 1 25 C n 1 26 C n 1 27 C n 1 28 G n 1 29 A n 1 30 C n 1 31 C n 1 32 G n 1 33 G n 1 34 U n 1 35 G n 1 36 G n 1 37 U n 1 38 A n 1 39 U n 1 40 A n 1 41 G n 1 42 U n 1 43 C n 1 44 C n 1 45 A n 1 46 C n 1 47 G n 1 48 A n 1 49 A n 1 50 U n 1 51 C n 1 52 C n 1 53 A n 1 54 U n 2 1 G n 2 2 G n 2 3 A n 2 4 U n 2 5 U n 2 6 G n 2 7 A n 2 8 U n 2 9 U n 2 10 U n 2 11 G n 2 12 G n 2 13 U n 2 14 G n 2 15 A n 2 16 A n 2 17 A n 2 18 U n 2 19 U n 2 20 C n 2 21 C n 2 22 A n 2 23 A n 2 24 A n 2 25 A n 2 26 C n 2 27 C n 2 28 G n 2 29 A n 2 30 C n 2 31 A n 2 32 G n 2 33 U n 2 34 A n 2 35 G n 2 36 A n 2 37 G n 2 38 U n 2 39 C n 2 40 U n 2 41 G n 2 42 G n 2 43 A n 2 44 U n 2 45 G n 2 46 A n 2 47 G n 2 48 A n 2 49 G n 2 50 A n 2 51 A n 2 52 G n 2 53 A n 2 54 U n 2 55 U n 2 56 C n 2 57 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 54 'Fusobacterium nucleatum' ? 851 ? 2 1 sample 1 57 'Fusobacterium nucleatum' ? 851 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6DN1 6DN1 ? 1 ? 1 2 PDB 6DN1 6DN1 ? 2 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DN1 X 1 ? 54 ? 6DN1 1 ? 54 ? 1 54 2 2 6DN1 Z 1 ? 57 ? 6DN1 57 ? 113 ? 57 113 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GZ7 non-polymer . '10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium' ? 'C23 H30 N5 O4 1' 440.515 HOH non-polymer . WATER ? 'H2 O' 18.015 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DN1 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.13 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 60.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method EVAPORATION _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details 'PEG 4000' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2009-05-28 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97950 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'NSLS BEAMLINE X25' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97950 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline X25 _diffrn_source.pdbx_synchrotron_site NSLS # _reflns.B_iso_Wilson_estimate 80 _reflns.entry_id 6DN1 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.050 _reflns.d_resolution_low 140.711 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 36651 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 67.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 6.8 _reflns.pdbx_Rmerge_I_obs 0.095 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 6.310 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.198 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.111 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.998 _reflns.pdbx_R_split ? _reflns.pdbx_CC_star ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split _reflns_shell.pdbx_CC_star 2.050 2.170 ? ? ? ? ? ? 1350 15.400 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 1 ? ? ? 2.170 2.320 ? 0.020 ? ? ? ? 3616 43.400 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 0.226 ? ? 2.320 2.510 ? ? ? ? ? ? 4953 63.900 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 ? ? ? 2.510 2.750 ? 0.100 ? ? ? ? 5834 81.900 ? ? ? ? 7.631 ? ? ? ? ? ? ? ? ? ? ? ? ? 9.191 ? ? 4 1 ? ? ? 2.750 3.070 ? 0.910 ? ? ? ? 6075 94.400 ? ? ? ? 1.610 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? ? 5 1 0.421 ? ? 3.070 3.550 ? 5.320 ? ? ? ? 5286 93.100 ? ? ? ? 0.296 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.341 ? ? 6 1 0.954 ? ? 3.550 4.340 ? 13.360 ? ? ? ? 4370 91.200 ? ? ? ? 0.106 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.122 ? ? 7 1 0.992 ? ? 4.340 6.120 ? 24.890 ? ? ? ? 3363 90.500 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.055 ? ? 8 1 0.997 ? ? 6.120 140.711 ? 30.470 ? ? ? ? 1804 87.900 ? ? ? ? 0.035 ? ? ? ? ? ? ? ? ? ? ? ? ? 0.040 ? ? 9 1 0.998 ? ? # _refine.aniso_B[1][1] 4.0653 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] 4.0653 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] -8.1306 _refine.B_iso_max 137.840 _refine.B_iso_mean 84.7600 _refine.B_iso_min 50.690 _refine.correlation_coeff_Fo_to_Fc 0.9270 _refine.correlation_coeff_Fo_to_Fc_free 0.9240 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DN1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 3.0300 _refine.ls_d_res_low 30.8800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8941 _refine.ls_number_reflns_R_free 471 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 97.0000 _refine.ls_percent_reflns_R_free 5.2700 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2240 _refine.ls_R_factor_R_free 0.2420 _refine.ls_R_factor_R_free_error 0.0000 _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2230 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 3F4E _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI 0.4040 _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_analyze.entry_id 6DN1 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_coordinate_error_obs 0.430 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_sigma_a_free_details ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_obs_details ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.RG_d_res_high ? _refine_analyze.RG_d_res_low ? _refine_analyze.RG_free ? _refine_analyze.RG_work ? _refine_analyze.RG_free_work_ratio ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 3.0300 _refine_hist.d_res_low 30.8800 _refine_hist.pdbx_number_atoms_ligand 68 _refine_hist.number_atoms_solvent 28 _refine_hist.number_atoms_total 2480 _refine_hist.pdbx_number_residues_total 111 _refine_hist.pdbx_B_iso_mean_ligand 67.73 _refine_hist.pdbx_B_iso_mean_solvent 70.40 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 2384 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? ? ? 564 ? t_dihedral_angle_d 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' ? ? ? ? ? t_trig_c_planes ? ? 'X-RAY DIFFRACTION' ? ? ? 143 ? t_gen_planes 5.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 2733 ? t_it 20.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? 10 ? t_nbd 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_improper_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_pseud_angle ? ? 'X-RAY DIFFRACTION' ? ? ? 444 ? t_chiral_improper_torsion 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_sum_occupancies ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_distance ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_angle ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? t_utility_torsion ? ? 'X-RAY DIFFRACTION' ? ? ? 2740 ? t_ideal_dist_contact 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' ? 0.010 ? 2733 ? t_bond_d 2.000 HARMONIC 'X-RAY DIFFRACTION' ? 0.770 ? 4275 ? t_angle_deg 2.000 HARMONIC 'X-RAY DIFFRACTION' ? ? ? ? ? t_omega_torsion ? ? 'X-RAY DIFFRACTION' ? 26.690 ? ? ? t_other_torsion ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 3.0300 _refine_ls_shell.d_res_low 3.3900 _refine_ls_shell.number_reflns_all 2541 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 146 _refine_ls_shell.number_reflns_R_work 2395 _refine_ls_shell.percent_reflns_obs 98.9500 _refine_ls_shell.percent_reflns_R_free 5.7500 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2750 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.2630 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6DN1 _struct.title 'CRYSTAL STRUCTURE OF THE FMN RIBOSWITCH BOUND TO BRX1151 SPLIT RNA' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DN1 _struct_keywords.text 'FMN, RIBOSWITCH, TRANSCRIPTION, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 5 ? I N N 3 ? J N N 3 ? K N N 6 ? L N N 6 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B U 33 O4 ? ? ? 1_555 J MG . MG ? ? Z U 89 Z MG 204 1_555 ? ? ? ? ? ? ? 2.410 ? ? metalc2 metalc ? ? B A 36 OP2 ? ? ? 1_555 J MG . MG ? ? Z A 92 Z MG 204 1_555 ? ? ? ? ? ? ? 2.084 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 56 N3 ? ? X G 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 56 O2 ? ? X G 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 56 N4 ? ? X G 1 Z C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B U 55 O2 ? ? X G 2 Z U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog5 hydrog ? ? A G 2 O6 ? ? ? 1_555 B U 55 N3 ? ? X G 2 Z U 111 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B U 54 N3 ? ? X A 3 Z U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B U 54 O4 ? ? X A 3 Z U 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 4 N3 ? ? ? 1_555 B A 53 N1 ? ? X U 4 Z A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 O4 ? ? ? 1_555 B A 53 N6 ? ? X U 4 Z A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 5 N3 ? ? ? 1_555 B G 52 N1 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N4 ? ? ? 1_555 B G 52 O6 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 O2 ? ? ? 1_555 B G 52 N2 ? ? X C 5 Z G 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 51 N1 ? ? X U 6 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A U 6 O4 ? ? ? 1_555 B A 51 N6 ? ? X U 6 Z A 107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B A 50 N1 ? ? X U 7 Z A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 7 O4 ? ? ? 1_555 B A 50 N6 ? ? X U 7 Z A 106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 49 N1 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 49 O6 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 49 N2 ? ? X C 8 Z G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N2 ? ? ? 1_555 B A 48 N7 ? ? X G 9 Z A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog21 hydrog ? ? A G 9 N3 ? ? ? 1_555 B A 48 N6 ? ? X G 9 Z A 104 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog22 hydrog ? ? A G 10 O6 ? ? ? 1_555 A G 47 N2 ? ? X G 10 X G 47 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog23 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 31 O2 ? ? X G 11 X C 31 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog24 hydrog ? ? A G 11 N2 ? ? ? 1_555 A G 32 N3 ? ? X G 11 X G 32 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog25 hydrog ? ? A G 12 N2 ? ? ? 1_555 B G 37 N3 ? ? X G 12 Z G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog26 hydrog ? ? A G 12 N3 ? ? ? 1_555 B G 37 N2 ? ? X G 12 Z G 93 1_555 ? ? ? ? ? ? TYPE_4_PAIR ? ? ? hydrog27 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 28 N1 ? ? X C 13 X G 28 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog28 hydrog ? ? A A 14 N6 ? ? ? 1_555 A G 28 N3 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog29 hydrog ? ? A A 14 N7 ? ? ? 1_555 A G 28 N2 ? ? X A 14 X G 28 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog30 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 27 N3 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 27 O2 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 15 O6 ? ? ? 1_555 A C 27 N4 ? ? X G 15 X C 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 A C 26 N3 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 A C 26 O2 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 A C 26 N4 ? ? X G 16 X C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 17 N1 ? ? ? 1_555 A C 25 N3 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 17 N2 ? ? ? 1_555 A C 25 O2 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 17 O6 ? ? ? 1_555 A C 25 N4 ? ? X G 17 X C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 18 N3 ? ? ? 1_555 A A 22 N7 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog40 hydrog ? ? A U 18 O2 ? ? ? 1_555 A A 22 N6 ? ? X U 18 X A 22 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog41 hydrog ? ? A G 19 N2 ? ? ? 1_555 B A 34 N7 ? ? X G 19 Z A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 19 N3 ? ? ? 1_555 B A 34 N6 ? ? X G 19 Z A 90 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog43 hydrog ? ? A A 29 N1 ? ? ? 1_555 B U 38 N3 ? ? X A 29 Z U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A A 29 N6 ? ? ? 1_555 B U 38 O4 ? ? X A 29 Z U 94 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A C 30 N3 ? ? ? 1_555 B G 37 N1 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 30 N4 ? ? ? 1_555 B G 37 O6 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 30 O2 ? ? ? 1_555 B G 37 N2 ? ? X C 30 Z G 93 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 31 N3 ? ? ? 1_555 B G 28 N1 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? A C 31 N4 ? ? ? 1_555 B G 28 O6 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 31 O2 ? ? ? 1_555 B G 28 N2 ? ? X C 31 Z G 84 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A G 32 N1 ? ? ? 1_555 B C 27 N3 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A G 32 N2 ? ? ? 1_555 B C 27 O2 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A G 32 O6 ? ? ? 1_555 B C 27 N4 ? ? X G 32 Z C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 33 N1 ? ? ? 1_555 A C 46 N3 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 33 N2 ? ? ? 1_555 A C 46 O2 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 33 O6 ? ? ? 1_555 A C 46 N4 ? ? X G 33 X C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 33 N2 ? ? ? 1_555 B A 48 N3 ? ? X G 33 Z A 104 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog58 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? X U 34 X A 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 35 N1 ? ? ? 1_555 A C 44 N3 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 35 N2 ? ? ? 1_555 A C 44 O2 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 35 O6 ? ? ? 1_555 A C 44 N4 ? ? X G 35 X C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? X G 36 X C 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A U 37 N3 ? ? ? 1_555 A A 40 N7 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog67 hydrog ? ? A U 37 O2 ? ? ? 1_555 A A 40 N6 ? ? X U 37 X A 40 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog68 hydrog ? ? A A 38 N6 ? ? ? 1_555 B G 14 N3 ? ? X A 38 Z G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog69 hydrog ? ? A A 38 N7 ? ? ? 1_555 B G 14 N2 ? ? X A 38 Z G 70 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog70 hydrog ? ? A G 41 N2 ? ? ? 1_555 B A 7 N3 ? ? X G 41 Z A 63 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog71 hydrog ? ? A G 41 N1 ? ? ? 1_555 B C 26 N3 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 41 N2 ? ? ? 1_555 B C 26 O2 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 41 O6 ? ? ? 1_555 B C 26 N4 ? ? X G 41 Z C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A U 42 N3 ? ? ? 1_555 B A 25 N1 ? ? X U 42 Z A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A U 42 O4 ? ? ? 1_555 B A 25 N6 ? ? X U 42 Z A 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A A 49 N6 ? ? ? 1_555 B U 4 O2 ? ? X A 49 Z U 60 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog77 hydrog ? ? A U 50 N3 ? ? ? 1_555 B A 3 N1 ? ? X U 50 Z A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A U 50 O4 ? ? ? 1_555 B A 3 N6 ? ? X U 50 Z A 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A C 51 N3 ? ? ? 1_555 B G 2 N1 ? ? X C 51 Z G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A C 51 N4 ? ? ? 1_555 B G 2 O6 ? ? X C 51 Z G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A C 51 O2 ? ? ? 1_555 B G 2 N2 ? ? X C 51 Z G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A C 52 N3 ? ? ? 1_555 B G 1 N1 ? ? X C 52 Z G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A C 52 N4 ? ? ? 1_555 B G 1 O6 ? ? X C 52 Z G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A C 52 O2 ? ? ? 1_555 B G 1 N2 ? ? X C 52 Z G 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? B G 6 N2 ? ? ? 1_555 B C 27 O2 ? ? Z G 62 Z C 83 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog86 hydrog ? ? B G 6 N2 ? ? ? 1_555 B G 28 N3 ? ? Z G 62 Z G 84 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog87 hydrog ? ? B U 8 N3 ? ? ? 1_555 B A 24 N1 ? ? Z U 64 Z A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? B U 8 O4 ? ? ? 1_555 B A 24 N6 ? ? Z U 64 Z A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? B U 9 N3 ? ? ? 1_555 B A 23 N1 ? ? Z U 65 Z A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? B U 9 O4 ? ? ? 1_555 B A 23 N6 ? ? Z U 65 Z A 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? B U 10 N3 ? ? ? 1_555 B A 22 N1 ? ? Z U 66 Z A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? B U 10 O4 ? ? ? 1_555 B A 22 N6 ? ? Z U 66 Z A 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? B G 11 N1 ? ? ? 1_555 B C 21 N3 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? B G 11 N2 ? ? ? 1_555 B C 21 O2 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? B G 11 O6 ? ? ? 1_555 B C 21 N4 ? ? Z G 67 Z C 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? B G 12 N1 ? ? ? 1_555 B C 20 N3 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? B G 12 N2 ? ? ? 1_555 B C 20 O2 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? B G 12 O6 ? ? ? 1_555 B C 20 N4 ? ? Z G 68 Z C 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? B U 13 N3 ? ? ? 1_555 B A 17 N7 ? ? Z U 69 Z A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog100 hydrog ? ? B U 13 O2 ? ? ? 1_555 B A 17 N6 ? ? Z U 69 Z A 73 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog101 hydrog ? ? B A 29 N1 ? ? ? 1_555 B G 42 N1 ? ? Z A 85 Z G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog102 hydrog ? ? B A 29 N6 ? ? ? 1_555 B G 42 O6 ? ? Z A 85 Z G 98 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog103 hydrog ? ? B C 30 N3 ? ? ? 1_555 B G 41 N1 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog104 hydrog ? ? B C 30 N4 ? ? ? 1_555 B G 41 O6 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog105 hydrog ? ? B C 30 O2 ? ? ? 1_555 B G 41 N2 ? ? Z C 86 Z G 97 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog106 hydrog ? ? B A 31 N1 ? ? ? 1_555 B U 40 N3 ? ? Z A 87 Z U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog107 hydrog ? ? B A 31 N6 ? ? ? 1_555 B U 40 O4 ? ? Z A 87 Z U 96 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog108 hydrog ? ? B G 32 N1 ? ? ? 1_555 B C 39 N3 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog109 hydrog ? ? B G 32 N2 ? ? ? 1_555 B C 39 O2 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog110 hydrog ? ? B G 32 O6 ? ? ? 1_555 B C 39 N4 ? ? Z G 88 Z C 95 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog111 hydrog ? ? B U 33 N3 ? ? ? 1_555 B A 36 N7 ? ? Z U 89 Z A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog112 hydrog ? ? B U 33 O2 ? ? ? 1_555 B A 36 N6 ? ? Z U 89 Z A 92 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software Z GZ7 201 ? 11 'binding site for residue GZ7 Z 201' AC2 Software Z MG 203 ? 1 'binding site for residue MG Z 203' AC3 Software Z MG 204 ? 2 'binding site for residue MG Z 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 G A 10 ? G X 10 . ? 1_555 ? 2 AC1 11 G A 11 ? G X 11 . ? 1_555 ? 3 AC1 11 G A 32 ? G X 32 . ? 1_555 ? 4 AC1 11 A A 48 ? A X 48 . ? 1_555 ? 5 AC1 11 A A 49 ? A X 49 . ? 1_555 ? 6 AC1 11 U B 5 ? U Z 61 . ? 1_555 ? 7 AC1 11 G B 6 ? G Z 62 . ? 1_555 ? 8 AC1 11 G B 28 ? G Z 84 . ? 1_555 ? 9 AC1 11 A B 29 ? A Z 85 . ? 1_555 ? 10 AC1 11 G B 42 ? G Z 98 . ? 1_555 ? 11 AC1 11 A B 43 ? A Z 99 . ? 1_555 ? 12 AC2 1 G B 37 ? G Z 93 . ? 1_555 ? 13 AC3 2 U B 33 ? U Z 89 . ? 1_555 ? 14 AC3 2 A B 36 ? A Z 92 . ? 1_555 ? # _atom_sites.entry_id 6DN1 _atom_sites.fract_transf_matrix[1][1] 0.013434 _atom_sites.fract_transf_matrix[1][2] 0.007756 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015512 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.007107 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H K MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G X . n A 1 2 G 2 2 2 G G X . n A 1 3 A 3 3 3 A A X . n A 1 4 U 4 4 4 U U X . n A 1 5 C 5 5 5 C C X . n A 1 6 U 6 6 6 U U X . n A 1 7 U 7 7 7 U U X . n A 1 8 C 8 8 8 C C X . n A 1 9 G 9 9 9 G G X . n A 1 10 G 10 10 10 G G X . n A 1 11 G 11 11 11 G G X . n A 1 12 G 12 12 12 G G X . n A 1 13 C 13 13 13 C C X . n A 1 14 A 14 14 14 A A X . n A 1 15 G 15 15 15 G G X . n A 1 16 G 16 16 16 G G X . n A 1 17 G 17 17 17 G G X . n A 1 18 U 18 18 18 U U X . n A 1 19 G 19 19 19 G G X . n A 1 20 A 20 20 20 A A X . n A 1 21 A 21 21 21 A A X . n A 1 22 A 22 22 22 A A X . n A 1 23 U 23 23 23 U U X . n A 1 24 U 24 24 24 U U X . n A 1 25 C 25 25 25 C C X . n A 1 26 C 26 26 26 C C X . n A 1 27 C 27 27 27 C C X . n A 1 28 G 28 28 28 G G X . n A 1 29 A 29 29 29 A A X . n A 1 30 C 30 30 30 C C X . n A 1 31 C 31 31 31 C C X . n A 1 32 G 32 32 32 G G X . n A 1 33 G 33 33 33 G G X . n A 1 34 U 34 34 34 U U X . n A 1 35 G 35 35 35 G G X . n A 1 36 G 36 36 36 G G X . n A 1 37 U 37 37 37 U U X . n A 1 38 A 38 38 38 A A X . n A 1 39 U 39 39 39 U U X . n A 1 40 A 40 40 40 A A X . n A 1 41 G 41 41 41 G G X . n A 1 42 U 42 42 42 U U X . n A 1 43 C 43 43 43 C C X . n A 1 44 C 44 44 44 C C X . n A 1 45 A 45 45 45 A A X . n A 1 46 C 46 46 46 C C X . n A 1 47 G 47 47 47 G G X . n A 1 48 A 48 48 48 A A X . n A 1 49 A 49 49 49 A A X . n A 1 50 U 50 50 50 U U X . n A 1 51 C 51 51 51 C C X . n A 1 52 C 52 52 52 C C X . n A 1 53 A 53 53 53 A A X . n A 1 54 U 54 54 54 U U X . n B 2 1 G 1 57 57 G G Z . n B 2 2 G 2 58 58 G G Z . n B 2 3 A 3 59 59 A A Z . n B 2 4 U 4 60 60 U U Z . n B 2 5 U 5 61 61 U U Z . n B 2 6 G 6 62 62 G G Z . n B 2 7 A 7 63 63 A A Z . n B 2 8 U 8 64 64 U U Z . n B 2 9 U 9 65 65 U U Z . n B 2 10 U 10 66 66 U U Z . n B 2 11 G 11 67 67 G G Z . n B 2 12 G 12 68 68 G G Z . n B 2 13 U 13 69 69 U U Z . n B 2 14 G 14 70 70 G G Z . n B 2 15 A 15 71 71 A A Z . n B 2 16 A 16 72 72 A A Z . n B 2 17 A 17 73 73 A A Z . n B 2 18 U 18 74 74 U U Z . n B 2 19 U 19 75 75 U U Z . n B 2 20 C 20 76 76 C C Z . n B 2 21 C 21 77 77 C C Z . n B 2 22 A 22 78 78 A A Z . n B 2 23 A 23 79 79 A A Z . n B 2 24 A 24 80 80 A A Z . n B 2 25 A 25 81 81 A A Z . n B 2 26 C 26 82 82 C C Z . n B 2 27 C 27 83 83 C C Z . n B 2 28 G 28 84 84 G G Z . n B 2 29 A 29 85 85 A A Z . n B 2 30 C 30 86 86 C C Z . n B 2 31 A 31 87 87 A A Z . n B 2 32 G 32 88 88 G G Z . n B 2 33 U 33 89 89 U U Z . n B 2 34 A 34 90 90 A A Z . n B 2 35 G 35 91 91 G G Z . n B 2 36 A 36 92 92 A A Z . n B 2 37 G 37 93 93 G G Z . n B 2 38 U 38 94 94 U U Z . n B 2 39 C 39 95 95 C C Z . n B 2 40 U 40 96 96 U U Z . n B 2 41 G 41 97 97 G G Z . n B 2 42 G 42 98 98 G G Z . n B 2 43 A 43 99 99 A A Z . n B 2 44 U 44 100 100 U U Z . n B 2 45 G 45 101 101 G G Z . n B 2 46 A 46 102 102 A A Z . n B 2 47 G 47 103 103 G G Z . n B 2 48 A 48 104 104 A A Z . n B 2 49 G 49 105 105 G G Z . n B 2 50 A 50 106 106 A A Z . n B 2 51 A 51 107 107 A A Z . n B 2 52 G 52 108 108 G G Z . n B 2 53 A 53 109 109 A A Z . n B 2 54 U 54 110 110 U U Z . n B 2 55 U 55 111 111 U U Z . n B 2 56 C 56 112 112 C C Z . n B 2 57 G 57 113 113 G G Z . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG 1 101 1 MG MG X . D 3 MG 1 102 2 MG MG X . E 3 MG 1 103 4 MG MG X . F 3 MG 1 104 7 MG MG X . G 4 GZ7 1 201 1 GZ7 XXX Z . H 5 K 1 202 1 K K Z . I 3 MG 1 203 5 MG MG Z . J 3 MG 1 204 6 MG MG Z . K 6 HOH 1 201 18 HOH HOH X . K 6 HOH 2 202 8 HOH HOH X . K 6 HOH 3 203 16 HOH HOH X . K 6 HOH 4 204 19 HOH HOH X . K 6 HOH 5 205 6 HOH HOH X . K 6 HOH 6 206 10 HOH HOH X . K 6 HOH 7 207 5 HOH HOH X . K 6 HOH 8 208 23 HOH HOH X . K 6 HOH 9 209 11 HOH HOH X . K 6 HOH 10 210 2 HOH HOH X . K 6 HOH 11 211 27 HOH HOH X . K 6 HOH 12 212 13 HOH HOH X . L 6 HOH 1 301 15 HOH HOH Z . L 6 HOH 2 302 25 HOH HOH Z . L 6 HOH 3 303 21 HOH HOH Z . L 6 HOH 4 304 28 HOH HOH Z . L 6 HOH 5 305 26 HOH HOH Z . L 6 HOH 6 306 14 HOH HOH Z . L 6 HOH 7 307 7 HOH HOH Z . L 6 HOH 8 308 22 HOH HOH Z . L 6 HOH 9 309 1 HOH HOH Z . L 6 HOH 10 310 20 HOH HOH Z . L 6 HOH 11 311 9 HOH HOH Z . L 6 HOH 12 312 12 HOH HOH Z . L 6 HOH 13 313 29 HOH HOH Z . L 6 HOH 14 314 3 HOH HOH Z . L 6 HOH 15 315 17 HOH HOH Z . L 6 HOH 16 316 24 HOH HOH Z . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6400 ? 1 MORE -48 ? 1 'SSA (A^2)' 16650 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_struct_conn_angle.id 1 _pdbx_struct_conn_angle.ptnr1_label_atom_id O4 _pdbx_struct_conn_angle.ptnr1_label_alt_id ? _pdbx_struct_conn_angle.ptnr1_label_asym_id B _pdbx_struct_conn_angle.ptnr1_label_comp_id U _pdbx_struct_conn_angle.ptnr1_label_seq_id 33 _pdbx_struct_conn_angle.ptnr1_auth_atom_id ? _pdbx_struct_conn_angle.ptnr1_auth_asym_id Z _pdbx_struct_conn_angle.ptnr1_auth_comp_id U _pdbx_struct_conn_angle.ptnr1_auth_seq_id 89 _pdbx_struct_conn_angle.ptnr1_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr1_symmetry 1_555 _pdbx_struct_conn_angle.ptnr2_label_atom_id MG _pdbx_struct_conn_angle.ptnr2_label_alt_id ? _pdbx_struct_conn_angle.ptnr2_label_asym_id J _pdbx_struct_conn_angle.ptnr2_label_comp_id MG _pdbx_struct_conn_angle.ptnr2_label_seq_id . _pdbx_struct_conn_angle.ptnr2_auth_atom_id ? _pdbx_struct_conn_angle.ptnr2_auth_asym_id Z _pdbx_struct_conn_angle.ptnr2_auth_comp_id MG _pdbx_struct_conn_angle.ptnr2_auth_seq_id 204 _pdbx_struct_conn_angle.ptnr2_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr2_symmetry 1_555 _pdbx_struct_conn_angle.ptnr3_label_atom_id OP2 _pdbx_struct_conn_angle.ptnr3_label_alt_id ? _pdbx_struct_conn_angle.ptnr3_label_asym_id B _pdbx_struct_conn_angle.ptnr3_label_comp_id A _pdbx_struct_conn_angle.ptnr3_label_seq_id 36 _pdbx_struct_conn_angle.ptnr3_auth_atom_id ? _pdbx_struct_conn_angle.ptnr3_auth_asym_id Z _pdbx_struct_conn_angle.ptnr3_auth_comp_id A _pdbx_struct_conn_angle.ptnr3_auth_seq_id 92 _pdbx_struct_conn_angle.ptnr3_PDB_ins_code ? _pdbx_struct_conn_angle.ptnr3_symmetry 1_555 _pdbx_struct_conn_angle.value 95.8 _pdbx_struct_conn_angle.value_esd ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-09-05 2 'Structure model' 1 1 2018-10-03 3 'Structure model' 1 2 2018-10-31 4 'Structure model' 1 3 2020-10-21 5 'Structure model' 1 4 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Data collection' 4 3 'Structure model' 'Database references' 5 4 'Structure model' 'Data collection' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 3 'Structure model' citation 3 4 'Structure model' reflns_shell 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.title' 2 3 'Structure model' '_citation.journal_volume' 3 3 'Structure model' '_citation.page_first' 4 3 'Structure model' '_citation.page_last' 5 4 'Structure model' '_reflns_shell.Rmerge_I_obs' 6 4 'Structure model' '_reflns_shell.pdbx_Rrim_I_all' 7 5 'Structure model' '_database_2.pdbx_DOI' 8 5 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? BUSTER ? ? ? 2.10.3 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.22 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O5'" X U 6 ? ? "C5'" X U 6 ? ? 1.314 1.420 -0.106 0.009 N 2 1 "O5'" Z U 111 ? ? "C5'" Z U 111 ? ? 1.349 1.420 -0.071 0.009 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 GZ7 C4 C Y N 111 GZ7 O4 O N N 112 GZ7 C6 C Y N 113 GZ7 N1 N Y N 114 GZ7 C7 C Y N 115 GZ7 C8 C Y N 116 GZ7 C9 C Y N 117 GZ7 C10 C Y N 118 GZ7 C11 C N N 119 GZ7 C12 C N N 120 GZ7 N3 N Y N 121 GZ7 C13 C N N 122 GZ7 C01 C N N 123 GZ7 N01 N N N 124 GZ7 O01 O N N 125 GZ7 C02 C N N 126 GZ7 C2 C Y N 127 GZ7 O02 O N N 128 GZ7 O2 O N N 129 GZ7 C03 C N N 130 GZ7 C04 C N N 131 GZ7 C4A C Y N 132 GZ7 C05 C N N 133 GZ7 C5A C Y N 134 GZ7 N5 N Y N 135 GZ7 C06 C N N 136 GZ7 C07 C N N 137 GZ7 C7M C N N 138 GZ7 C08 C N N 139 GZ7 C09 C N N 140 GZ7 C9A C Y N 141 GZ7 N10 N Y N 142 GZ7 H41 H N N 143 GZ7 H61 H N N 144 GZ7 H91 H N N 145 GZ7 H111 H N N 146 GZ7 H112 H N N 147 GZ7 H121 H N N 148 GZ7 H122 H N N 149 GZ7 H132 H N N 150 GZ7 H131 H N N 151 GZ7 H012 H N N 152 GZ7 H011 H N N 153 GZ7 H013 H N N 154 GZ7 H022 H N N 155 GZ7 H021 H N N 156 GZ7 H1 H N N 157 GZ7 H21 H N N 158 GZ7 H031 H N N 159 GZ7 H032 H N N 160 GZ7 H042 H N N 161 GZ7 H041 H N N 162 GZ7 H051 H N N 163 GZ7 H052 H N N 164 GZ7 H061 H N N 165 GZ7 H062 H N N 166 GZ7 H7M1 H N N 167 GZ7 H7M3 H N N 168 GZ7 H7M2 H N N 169 GZ7 H081 H N N 170 GZ7 H091 H N N 171 GZ7 H092 H N N 172 HOH O O N N 173 HOH H1 H N N 174 HOH H2 H N N 175 K K K N N 176 MG MG MG N N 177 U OP3 O N N 178 U P P N N 179 U OP1 O N N 180 U OP2 O N N 181 U "O5'" O N N 182 U "C5'" C N N 183 U "C4'" C N R 184 U "O4'" O N N 185 U "C3'" C N S 186 U "O3'" O N N 187 U "C2'" C N R 188 U "O2'" O N N 189 U "C1'" C N R 190 U N1 N N N 191 U C2 C N N 192 U O2 O N N 193 U N3 N N N 194 U C4 C N N 195 U O4 O N N 196 U C5 C N N 197 U C6 C N N 198 U HOP3 H N N 199 U HOP2 H N N 200 U "H5'" H N N 201 U "H5''" H N N 202 U "H4'" H N N 203 U "H3'" H N N 204 U "HO3'" H N N 205 U "H2'" H N N 206 U "HO2'" H N N 207 U "H1'" H N N 208 U H3 H N N 209 U H5 H N N 210 U H6 H N N 211 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 GZ7 O01 C07 doub N N 116 GZ7 C06 C07 sing N N 117 GZ7 C06 C05 sing N N 118 GZ7 C07 O02 sing N N 119 GZ7 C05 C04 sing N N 120 GZ7 O2 C2 sing N N 121 GZ7 C04 C03 sing N N 122 GZ7 C01 C03 sing N N 123 GZ7 C01 C02 sing N N 124 GZ7 C2 N1 doub Y N 125 GZ7 C2 N3 sing Y N 126 GZ7 N1 C10 sing Y N 127 GZ7 C02 N10 sing N N 128 GZ7 N3 C4 doub Y N 129 GZ7 C10 N10 doub Y N 130 GZ7 C10 C4A sing Y N 131 GZ7 N10 C9A sing Y N 132 GZ7 C4 C4A sing Y N 133 GZ7 C4 O4 sing N N 134 GZ7 C4A N5 doub Y N 135 GZ7 C9A C9 doub Y N 136 GZ7 C9A C5A sing Y N 137 GZ7 C9 C8 sing Y N 138 GZ7 C09 C11 sing N N 139 GZ7 C09 C08 sing N N 140 GZ7 N5 C5A sing Y N 141 GZ7 C5A C6 doub Y N 142 GZ7 C11 C12 sing N N 143 GZ7 C08 C13 sing N N 144 GZ7 C08 N01 sing N N 145 GZ7 C8 N01 sing N N 146 GZ7 C8 C7 doub Y N 147 GZ7 C13 C12 sing N N 148 GZ7 C6 C7 sing Y N 149 GZ7 C7 C7M sing N N 150 GZ7 O4 H41 sing N N 151 GZ7 C6 H61 sing N N 152 GZ7 C9 H91 sing N N 153 GZ7 C11 H111 sing N N 154 GZ7 C11 H112 sing N N 155 GZ7 C12 H121 sing N N 156 GZ7 C12 H122 sing N N 157 GZ7 C13 H132 sing N N 158 GZ7 C13 H131 sing N N 159 GZ7 C01 H012 sing N N 160 GZ7 C01 H011 sing N N 161 GZ7 N01 H013 sing N N 162 GZ7 C02 H022 sing N N 163 GZ7 C02 H021 sing N N 164 GZ7 O02 H1 sing N N 165 GZ7 O2 H21 sing N N 166 GZ7 C03 H031 sing N N 167 GZ7 C03 H032 sing N N 168 GZ7 C04 H042 sing N N 169 GZ7 C04 H041 sing N N 170 GZ7 C05 H051 sing N N 171 GZ7 C05 H052 sing N N 172 GZ7 C06 H061 sing N N 173 GZ7 C06 H062 sing N N 174 GZ7 C7M H7M1 sing N N 175 GZ7 C7M H7M3 sing N N 176 GZ7 C7M H7M2 sing N N 177 GZ7 C08 H081 sing N N 178 GZ7 C09 H091 sing N N 179 GZ7 C09 H092 sing N N 180 HOH O H1 sing N N 181 HOH O H2 sing N N 182 U OP3 P sing N N 183 U OP3 HOP3 sing N N 184 U P OP1 doub N N 185 U P OP2 sing N N 186 U P "O5'" sing N N 187 U OP2 HOP2 sing N N 188 U "O5'" "C5'" sing N N 189 U "C5'" "C4'" sing N N 190 U "C5'" "H5'" sing N N 191 U "C5'" "H5''" sing N N 192 U "C4'" "O4'" sing N N 193 U "C4'" "C3'" sing N N 194 U "C4'" "H4'" sing N N 195 U "O4'" "C1'" sing N N 196 U "C3'" "O3'" sing N N 197 U "C3'" "C2'" sing N N 198 U "C3'" "H3'" sing N N 199 U "O3'" "HO3'" sing N N 200 U "C2'" "O2'" sing N N 201 U "C2'" "C1'" sing N N 202 U "C2'" "H2'" sing N N 203 U "O2'" "HO2'" sing N N 204 U "C1'" N1 sing N N 205 U "C1'" "H1'" sing N N 206 U N1 C2 sing N N 207 U N1 C6 sing N N 208 U C2 O2 doub N N 209 U C2 N3 sing N N 210 U N3 C4 sing N N 211 U N3 H3 sing N N 212 U C4 O4 doub N N 213 U C4 C5 sing N N 214 U C5 C6 doub N N 215 U C5 H5 sing N N 216 U C6 H6 sing N N 217 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DN1 'double helix' 6DN1 'a-form double helix' 6DN1 'hairpin loop' 6DN1 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 56 1_555 -0.614 -0.299 0.438 9.468 4.001 -4.532 1 X_G1:C112_Z X 1 ? Z 112 ? 19 1 1 A G 2 1_555 B U 55 1_555 -1.122 -0.524 -0.114 0.974 -10.805 -5.018 2 X_G2:U111_Z X 2 ? Z 111 ? 28 1 1 A A 3 1_555 B U 54 1_555 0.773 -0.209 -0.898 -15.067 -9.390 5.512 3 X_A3:U110_Z X 3 ? Z 110 ? 20 1 1 A U 4 1_555 B A 53 1_555 0.194 0.010 -0.089 -2.730 -16.079 8.133 4 X_U4:A109_Z X 4 ? Z 109 ? 20 1 1 A C 5 1_555 B G 52 1_555 0.580 0.041 0.219 0.598 -14.235 8.517 5 X_C5:G108_Z X 5 ? Z 108 ? 19 1 1 A U 6 1_555 B A 51 1_555 0.443 -0.022 -0.286 2.093 -21.634 -2.376 6 X_U6:A107_Z X 6 ? Z 107 ? 20 1 1 A U 7 1_555 B A 50 1_555 -0.434 0.320 -0.353 4.774 -14.334 1.360 7 X_U7:A106_Z X 7 ? Z 106 ? 20 1 1 A C 8 1_555 B G 49 1_555 0.459 -0.054 0.442 -4.064 -13.564 5.534 8 X_C8:G105_Z X 8 ? Z 105 ? 19 1 1 A G 9 1_555 B A 48 1_555 6.669 -4.431 0.472 -21.161 -40.213 -9.707 9 X_G9:A104_Z X 9 ? Z 104 ? 11 10 1 A G 10 1_555 A G 47 1_555 -4.866 -1.879 -0.131 26.936 -15.922 68.257 10 X_G10:G47_X X 10 ? X 47 ? ? ? 1 A G 33 1_555 A C 46 1_555 -0.447 -0.152 0.120 9.380 -12.596 3.465 11 X_G33:C46_X X 33 ? X 46 ? 19 1 1 A U 34 1_555 A A 45 1_555 0.267 -0.114 -0.243 0.096 -22.720 4.797 12 X_U34:A45_X X 34 ? X 45 ? 20 1 1 A G 35 1_555 A C 44 1_555 0.035 0.058 -0.091 -14.461 -10.378 -3.714 13 X_G35:C44_X X 35 ? X 44 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.075 -0.091 -0.320 -19.219 -16.990 -2.951 14 X_G36:C43_X X 36 ? X 43 ? 19 1 1 A U 37 1_555 A A 40 1_555 4.330 -2.043 -1.387 3.947 -8.715 -97.928 15 X_U37:A40_X X 37 ? X 40 ? 24 4 1 A A 38 1_555 B G 14 1_555 -6.883 -4.254 0.545 -16.731 28.035 -1.125 16 X_A38:G70_Z X 38 ? Z 70 ? 11 10 1 B A 17 1_555 B U 13 1_555 -4.467 -1.922 0.707 -2.020 12.606 -88.361 17 Z_A73:U69_Z Z 73 ? Z 69 ? 24 4 1 B C 20 1_555 B G 12 1_555 -0.452 -0.024 -0.037 12.871 -11.245 -2.620 18 Z_C76:G68_Z Z 76 ? Z 68 ? 19 1 1 B C 21 1_555 B G 11 1_555 -0.262 -0.171 0.356 4.173 -15.391 3.427 19 Z_C77:G67_Z Z 77 ? Z 67 ? 19 1 1 B A 22 1_555 B U 10 1_555 -0.280 -0.142 0.685 -0.028 -5.783 3.087 20 Z_A78:U66_Z Z 78 ? Z 66 ? 20 1 1 B A 23 1_555 B U 9 1_555 0.377 0.056 0.080 -5.370 -18.511 3.790 21 Z_A79:U65_Z Z 79 ? Z 65 ? 20 1 1 B A 24 1_555 B U 8 1_555 -0.152 -0.180 -0.011 -0.558 -1.783 10.465 22 Z_A80:U64_Z Z 80 ? Z 64 ? 20 1 1 B A 25 1_555 A U 42 1_555 0.420 0.019 -0.529 -11.506 -7.435 -7.854 23 Z_A81:U42_X Z 81 ? X 42 ? 20 1 1 B C 26 1_555 A G 41 1_555 0.379 -0.202 -0.111 1.478 -26.104 6.369 24 Z_C82:G41_X Z 82 ? X 41 ? 19 1 1 B C 27 1_555 A G 32 1_555 -0.161 -0.106 0.738 -10.828 -6.239 -4.062 25 Z_C83:G32_X Z 83 ? X 32 ? 19 1 1 B G 28 1_555 A C 31 1_555 -0.417 0.152 0.579 18.020 -25.230 6.514 26 Z_G84:C31_X Z 84 ? X 31 ? 19 1 1 B G 37 1_555 A C 30 1_555 -0.332 -0.164 0.601 7.541 -22.846 2.227 27 Z_G93:C30_X Z 93 ? X 30 ? 19 1 1 B U 38 1_555 A A 29 1_555 -0.340 -0.065 -0.385 12.586 -10.645 1.339 28 Z_U94:A29_X Z 94 ? X 29 ? 20 1 1 A A 14 1_555 A G 28 1_555 -7.075 -4.133 0.180 0.904 -14.389 -3.052 29 X_A14:G28_X X 14 ? X 28 ? 11 10 1 A G 15 1_555 A C 27 1_555 -1.111 -0.294 -0.204 -4.220 -6.800 2.642 30 X_G15:C27_X X 15 ? X 27 ? 19 1 1 A G 16 1_555 A C 26 1_555 -0.486 -0.060 -0.379 -8.578 -11.936 6.035 31 X_G16:C26_X X 16 ? X 26 ? 19 1 1 A G 17 1_555 A C 25 1_555 0.033 -0.185 -0.284 -18.846 -8.339 -6.399 32 X_G17:C25_X X 17 ? X 25 ? 19 1 1 A U 18 1_555 A A 22 1_555 4.286 -2.348 0.782 3.386 18.907 -88.168 33 X_U18:A22_X X 18 ? X 22 ? 24 4 1 A G 19 1_555 B A 34 1_555 6.952 -4.756 0.224 24.923 30.134 0.031 34 X_G19:A90_Z X 19 ? Z 90 ? 11 10 1 A A 49 1_555 B U 4 1_555 -4.713 -0.670 0.937 19.218 -1.459 7.392 35 X_A49:U60_Z X 49 ? Z 60 ? ? ? 1 A U 50 1_555 B A 3 1_555 -0.674 0.268 0.092 17.452 -7.918 1.220 36 X_U50:A59_Z X 50 ? Z 59 ? 20 1 1 A C 51 1_555 B G 2 1_555 0.988 -0.017 -0.096 13.891 -16.620 6.769 37 X_C51:G58_Z X 51 ? Z 58 ? 19 1 1 A C 52 1_555 B G 1 1_555 1.092 -0.467 0.294 -4.441 -9.658 -12.662 38 X_C52:G57_Z X 52 ? Z 57 ? 19 1 1 B A 29 1_555 B G 42 1_555 -0.059 1.631 -0.111 3.243 -16.181 -17.164 39 Z_A85:G98_Z Z 85 ? Z 98 ? 8 1 1 B C 30 1_555 B G 41 1_555 0.104 -0.141 0.226 9.268 -23.732 2.200 40 Z_C86:G97_Z Z 86 ? Z 97 ? 19 1 1 B A 31 1_555 B U 40 1_555 -0.195 -0.175 0.073 -14.283 -25.775 4.734 41 Z_A87:U96_Z Z 87 ? Z 96 ? 20 1 1 B G 32 1_555 B C 39 1_555 -0.008 0.003 0.221 -21.597 -17.221 -0.751 42 Z_G88:C95_Z Z 88 ? Z 95 ? 19 1 1 B U 33 1_555 B A 36 1_555 4.264 -2.189 0.066 10.645 9.231 -94.107 43 Z_U89:A92_Z Z 89 ? Z 92 ? 24 4 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 56 1_555 A G 2 1_555 B U 55 1_555 -0.203 -2.018 3.369 3.272 5.118 36.148 -3.902 0.766 3.036 8.176 -5.228 36.638 1 XX_G1G2:U111C112_ZZ X 1 ? Z 112 ? X 2 ? Z 111 ? 1 A G 2 1_555 B U 55 1_555 A A 3 1_555 B U 54 1_555 0.281 -1.402 3.926 4.744 9.607 38.065 -3.384 0.231 3.494 14.385 -7.104 39.491 2 XX_G2A3:U110U111_ZZ X 2 ? Z 111 ? X 3 ? Z 110 ? 1 A A 3 1_555 B U 54 1_555 A U 4 1_555 B A 53 1_555 0.094 -1.165 2.858 -3.197 8.508 29.057 -3.623 -0.706 2.405 16.457 6.185 30.416 3 XX_A3U4:A109U110_ZZ X 3 ? Z 110 ? X 4 ? Z 109 ? 1 A U 4 1_555 B A 53 1_555 A C 5 1_555 B G 52 1_555 0.362 -1.182 3.022 0.938 9.030 33.798 -3.168 -0.478 2.637 15.194 -1.578 34.962 4 XX_U4C5:G108A109_ZZ X 4 ? Z 109 ? X 5 ? Z 108 ? 1 A C 5 1_555 B G 52 1_555 A U 6 1_555 B A 51 1_555 -1.220 -1.426 3.241 0.802 8.255 30.851 -3.990 2.355 2.746 15.176 -1.474 31.920 5 XX_C5U6:A107G108_ZZ X 5 ? Z 108 ? X 6 ? Z 107 ? 1 A U 6 1_555 B A 51 1_555 A U 7 1_555 B A 50 1_555 -0.049 -1.399 3.238 -0.546 6.222 25.048 -4.764 -0.034 2.814 14.068 1.234 25.803 6 XX_U6U7:A106A107_ZZ X 6 ? Z 107 ? X 7 ? Z 106 ? 1 A U 7 1_555 B A 50 1_555 A C 8 1_555 B G 49 1_555 0.529 -1.528 3.492 -2.979 4.994 38.237 -2.943 -1.177 3.226 7.571 4.516 38.660 7 XX_U7C8:G105A106_ZZ X 7 ? Z 106 ? X 8 ? Z 105 ? 1 A C 8 1_555 B G 49 1_555 A G 9 1_555 B A 48 1_555 -2.166 -0.719 3.985 7.851 17.495 53.168 -1.903 2.808 3.294 18.867 -8.467 56.283 8 XX_C8G9:A104G105_ZZ X 8 ? Z 105 ? X 9 ? Z 104 ? 1 A G 10 1_555 A G 47 1_555 A G 33 1_555 A C 46 1_555 0.283 -3.897 -2.003 134.095 -92.463 48.088 -2.077 -0.303 1.405 -49.098 -71.205 164.378 9 XX_G10G33:C46G47_XX X 10 ? X 47 ? X 33 ? X 46 ? 1 A G 33 1_555 A C 46 1_555 A U 34 1_555 A A 45 1_555 -0.116 -2.041 3.458 -0.009 6.206 37.014 -3.991 0.179 3.088 9.692 0.014 37.513 10 XX_G33U34:A45C46_XX X 33 ? X 46 ? X 34 ? X 45 ? 1 A U 34 1_555 A A 45 1_555 A G 35 1_555 A C 44 1_555 -1.208 -1.776 3.536 -5.143 15.246 28.761 -5.709 1.267 2.482 28.089 9.476 32.873 11 XX_U34G35:C44A45_XX X 34 ? X 45 ? X 35 ? X 44 ? 1 A G 35 1_555 A C 44 1_555 A G 36 1_555 A C 43 1_555 0.741 -1.937 3.470 6.245 6.308 34.515 -4.114 -0.275 3.160 10.420 -10.315 35.604 12 XX_G35G36:C43C44_XX X 35 ? X 44 ? X 36 ? X 43 ? 1 A G 36 1_555 A C 43 1_555 A U 37 1_555 A A 40 1_555 -0.798 -1.248 2.578 12.159 -0.252 82.140 -0.938 0.833 2.466 -0.191 -9.209 82.877 13 XX_G36U37:A40C43_XX X 36 ? X 43 ? X 37 ? X 40 ? 1 A A 38 1_555 B G 14 1_555 B A 17 1_555 B U 13 1_555 -0.837 -0.476 2.832 -2.906 -0.258 -2.463 9.604 -40.265 1.158 4.410 -49.635 -3.818 14 XZ_A38A73:U69G70_ZZ X 38 ? Z 70 ? Z 73 ? Z 69 ? 1 B A 17 1_555 B U 13 1_555 B C 20 1_555 B G 12 1_555 2.788 -1.859 3.212 0.252 6.313 69.980 -1.830 -2.415 3.065 5.493 -0.219 70.229 15 ZZ_A73C76:G68U69_ZZ Z 73 ? Z 69 ? Z 76 ? Z 68 ? 1 B C 20 1_555 B G 12 1_555 B C 21 1_555 B G 11 1_555 -0.380 -1.666 3.315 -4.558 8.432 39.608 -3.301 0.057 2.939 12.227 6.610 40.706 16 ZZ_C76C77:G67G68_ZZ Z 76 ? Z 68 ? Z 77 ? Z 67 ? 1 B C 21 1_555 B G 11 1_555 B A 22 1_555 B U 10 1_555 -0.140 -1.747 3.108 -4.619 11.191 32.991 -4.358 -0.370 2.404 18.931 7.814 35.084 17 ZZ_C77A78:U66G67_ZZ Z 77 ? Z 67 ? Z 78 ? Z 66 ? 1 B A 22 1_555 B U 10 1_555 B A 23 1_555 B U 9 1_555 0.382 -1.634 3.373 7.768 9.193 31.985 -4.215 0.557 2.824 15.994 -13.513 34.119 18 ZZ_A78A79:U65U66_ZZ Z 78 ? Z 66 ? Z 79 ? Z 65 ? 1 B A 23 1_555 B U 9 1_555 B A 24 1_555 B U 8 1_555 0.602 -0.816 3.202 2.150 -1.897 28.330 -1.227 -0.734 3.284 -3.862 -4.378 28.472 19 ZZ_A79A80:U64U65_ZZ Z 79 ? Z 65 ? Z 80 ? Z 64 ? 1 B A 24 1_555 B U 8 1_555 B A 25 1_555 A U 42 1_555 -0.478 -2.674 3.540 6.080 9.783 28.902 -6.756 1.988 2.383 18.691 -11.617 31.067 20 ZZ_A80A81:U42U64_XZ Z 80 ? Z 64 ? Z 81 ? X 42 ? 1 B A 25 1_555 A U 42 1_555 B C 26 1_555 A G 41 1_555 1.142 -1.382 2.928 -0.994 1.928 36.955 -2.405 -1.917 2.824 3.038 1.566 37.016 21 ZZ_A81C82:G41U42_XX Z 81 ? X 42 ? Z 82 ? X 41 ? 1 B C 26 1_555 A G 41 1_555 B C 27 1_555 A G 32 1_555 -0.793 -1.805 3.555 -5.391 6.465 30.455 -4.580 0.404 3.203 12.021 10.023 31.570 22 ZZ_C82C83:G32G41_XX Z 82 ? X 41 ? Z 83 ? X 32 ? 1 B C 27 1_555 A G 32 1_555 B G 28 1_555 A C 31 1_555 0.354 0.109 2.753 3.357 6.099 29.909 -0.815 -0.106 2.743 11.621 -6.395 30.690 23 ZZ_C83G84:C31G32_XX Z 83 ? X 32 ? Z 84 ? X 31 ? 1 B G 28 1_555 A C 31 1_555 B G 37 1_555 A C 30 1_555 1.596 -1.788 3.375 -1.151 13.277 21.854 -7.341 -3.895 1.904 31.527 2.734 25.555 24 ZZ_G84G93:C30C31_XX Z 84 ? X 31 ? Z 93 ? X 30 ? 1 B G 37 1_555 A C 30 1_555 B U 38 1_555 A A 29 1_555 -0.535 -1.282 3.080 3.787 0.592 38.006 -2.029 1.263 2.996 0.906 -5.798 38.191 25 ZZ_G93U94:A29C30_XX Z 93 ? X 30 ? Z 94 ? X 29 ? 1 B U 38 1_555 A A 29 1_555 A A 14 1_555 A G 28 1_555 -2.578 -5.221 3.756 -0.877 6.350 27.803 -12.025 5.036 2.602 12.996 1.796 28.518 26 ZX_U94A14:G28A29_XX Z 94 ? X 29 ? X 14 ? X 28 ? 1 A A 14 1_555 A G 28 1_555 A G 15 1_555 A C 27 1_555 -0.068 -0.903 3.580 -1.682 5.519 58.924 -1.219 -0.024 3.491 5.596 1.705 59.180 27 XX_A14G15:C27G28_XX X 14 ? X 28 ? X 15 ? X 27 ? 1 A G 15 1_555 A C 27 1_555 A G 16 1_555 A C 26 1_555 1.100 -2.488 3.435 1.292 9.817 25.683 -7.458 -2.023 2.391 21.111 -2.779 27.495 28 XX_G15G16:C26C27_XX X 15 ? X 27 ? X 16 ? X 26 ? 1 A G 16 1_555 A C 26 1_555 A G 17 1_555 A C 25 1_555 -0.640 -2.119 3.386 0.756 9.129 40.310 -3.951 0.986 2.849 13.043 -1.080 41.296 29 XX_G16G17:C25C26_XX X 16 ? X 26 ? X 17 ? X 25 ? 1 A G 17 1_555 A C 25 1_555 A U 18 1_555 A A 22 1_555 -2.425 -1.529 3.036 0.132 3.110 72.095 -1.394 2.063 2.973 2.641 -0.112 72.153 30 XX_G17U18:A22C25_XX X 17 ? X 25 ? X 18 ? X 22 ? 1 A U 18 1_555 A A 22 1_555 A G 19 1_555 B A 34 1_555 1.610 -0.473 2.698 4.031 0.891 -0.037 2.854 39.173 -1.446 -19.306 87.377 -4.129 31 XX_U18G19:A90A22_ZX X 18 ? X 22 ? X 19 ? Z 90 ? 1 A A 49 1_555 B U 4 1_555 A U 50 1_555 B A 3 1_555 -0.928 -1.118 3.325 0.482 4.044 44.937 -1.820 1.253 3.208 5.278 -0.630 45.112 32 XX_A49U50:A59U60_ZZ X 49 ? Z 60 ? X 50 ? Z 59 ? 1 A U 50 1_555 B A 3 1_555 A C 51 1_555 B G 2 1_555 0.127 -1.381 3.344 3.339 4.994 39.574 -2.591 0.196 3.154 7.325 -4.898 40.010 33 XX_U50C51:G58A59_ZZ X 50 ? Z 59 ? X 51 ? Z 58 ? 1 A C 51 1_555 B G 2 1_555 A C 52 1_555 B G 1 1_555 -0.909 -1.733 3.639 2.178 9.258 39.861 -3.541 1.550 3.125 13.350 -3.141 40.935 34 XX_C51C52:G57G58_ZZ X 51 ? Z 58 ? X 52 ? Z 57 ? 1 B A 29 1_555 B G 42 1_555 B C 30 1_555 B G 41 1_555 1.174 -1.189 3.097 -5.146 3.216 33.051 -2.533 -2.793 2.764 5.594 8.951 33.588 35 ZZ_A85C86:G97G98_ZZ Z 85 ? Z 98 ? Z 86 ? Z 97 ? 1 B C 30 1_555 B G 41 1_555 B A 31 1_555 B U 40 1_555 0.102 -1.560 3.722 0.353 14.874 35.481 -4.324 -0.109 2.866 23.190 -0.550 38.382 36 ZZ_C86A87:U96G97_ZZ Z 86 ? Z 97 ? Z 87 ? Z 96 ? 1 B A 31 1_555 B U 40 1_555 B G 32 1_555 B C 39 1_555 0.032 -1.407 3.244 0.947 12.161 37.335 -3.446 0.057 2.674 18.404 -1.433 39.210 37 ZZ_A87G88:C95U96_ZZ Z 87 ? Z 96 ? Z 88 ? Z 95 ? 1 B G 32 1_555 B C 39 1_555 B U 33 1_555 B A 36 1_555 -1.054 -0.781 2.691 6.931 -1.755 78.959 -0.574 0.979 2.621 -1.378 -5.441 79.229 38 ZZ_G88U89:A92C95_ZZ Z 88 ? Z 95 ? Z 89 ? Z 92 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id GZ7 _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id GZ7 _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 '10-(6-carboxyhexyl)-8-(cyclopentylamino)-2,4-dihydroxy-7-methylbenzo[g]pteridin-10-ium' GZ7 5 'POTASSIUM ION' K 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3F4E _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'native gel electrophoresis' _pdbx_struct_assembly_auth_evidence.details ? #