HEADER OXIDOREDUCTASE 06-JUN-18 6DNL TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS DSBD C-TERMINAL DOMAIN IN TITLE 2 THE REDUCED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN-DISULFIDE REDUCTASE,DISULFIDE REDUCTASE; COMPND 5 EC: 1.8.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS; SOURCE 3 ORGANISM_TAXID: 487; SOURCE 4 GENE: DIPZ, DSBD, A6L27_07425, ERS514851_00843; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DISULPHIDE REDUCTASE, DSB PROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.SMITH,B.HERAS,J.J.PAXMAN REVDAT 4 13-MAR-24 6DNL 1 LINK REVDAT 3 07-NOV-18 6DNL 1 JRNL REVDAT 2 19-SEP-18 6DNL 1 JRNL REVDAT 1 12-SEP-18 6DNL 0 JRNL AUTH R.P.SMITH,B.MOHANTY,S.MOWLABOCCUS,J.J.PAXMAN,M.L.WILLIAMS, JRNL AUTH 2 S.J.HEADEY,G.WANG,P.SUBEDI,B.C.DOAK,C.M.KAHLER,M.J.SCANLON, JRNL AUTH 3 B.HERAS JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO THE DISULFIDE JRNL TITL 2 REDUCTASE MECHANISM OF DSBD, AN ESSENTIAL ENZYME FOR JRNL TITL 3 NEISSERIAL PATHOGENS. JRNL REF J. BIOL. CHEM. V. 293 16559 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30181210 JRNL DOI 10.1074/JBC.RA118.004847 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.P.SMITH,A.E.WHITTEN,J.J.PAXMAN,C.M.KAHLER,M.J.SCANLON, REMARK 1 AUTH 2 B.HERAS REMARK 1 TITL PRODUCTION, BIOPHYSICAL CHARACTERIZATION AND INITIAL REMARK 1 TITL 2 CRYSTALLIZATION STUDIES OF THE N- AND C-TERMINAL DOMAINS OF REMARK 1 TITL 3 DSBD, AN ESSENTIAL ENZYME IN NEISSERIA MENINGITIDIS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 74 31 2018 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 29372905 REMARK 1 DOI 10.1107/S2053230X17017800 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 12135 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.220 REMARK 3 FREE R VALUE TEST SET COUNT : 634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.3049 - 2.9065 0.99 2373 127 0.1588 0.1848 REMARK 3 2 2.9065 - 2.3071 1.00 2283 141 0.1838 0.2419 REMARK 3 3 2.3071 - 2.0155 1.00 2274 143 0.1757 0.1900 REMARK 3 4 2.0155 - 1.8313 1.00 2276 116 0.2022 0.2730 REMARK 3 5 1.8313 - 1.7000 1.00 2295 107 0.2364 0.2919 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 33 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2722 1.3530 14.4397 REMARK 3 T TENSOR REMARK 3 T11: 0.1086 T22: 0.1022 REMARK 3 T33: 0.0731 T12: 0.0019 REMARK 3 T13: 0.0249 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 4.7119 L22: 3.6464 REMARK 3 L33: 3.6756 L12: 1.0175 REMARK 3 L13: 2.2946 L23: 1.8180 REMARK 3 S TENSOR REMARK 3 S11: -0.1122 S12: 0.2021 S13: 0.1191 REMARK 3 S21: -0.0622 S22: 0.0237 S23: 0.0715 REMARK 3 S31: -0.0544 S32: 0.0606 S33: 0.0987 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 34 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5442 2.0200 5.1998 REMARK 3 T TENSOR REMARK 3 T11: 0.4550 T22: 0.3017 REMARK 3 T33: 0.2323 T12: 0.0192 REMARK 3 T13: 0.0128 T23: 0.0646 REMARK 3 L TENSOR REMARK 3 L11: 4.0442 L22: 3.2062 REMARK 3 L33: 5.2371 L12: -1.0893 REMARK 3 L13: 0.0158 L23: 0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.4369 S12: 0.6046 S13: 0.2744 REMARK 3 S21: -1.1145 S22: -0.1591 S23: -0.1197 REMARK 3 S31: 0.1558 S32: 0.3581 S33: -0.0796 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1477 -2.1348 18.3679 REMARK 3 T TENSOR REMARK 3 T11: 0.1321 T22: 0.1604 REMARK 3 T33: 0.1057 T12: 0.0173 REMARK 3 T13: -0.0004 T23: 0.0156 REMARK 3 L TENSOR REMARK 3 L11: 2.7450 L22: 3.0470 REMARK 3 L33: 2.3586 L12: -0.6572 REMARK 3 L13: -0.5871 L23: 1.0188 REMARK 3 S TENSOR REMARK 3 S11: -0.0360 S12: -0.1527 S13: 0.0497 REMARK 3 S21: 0.1095 S22: 0.1008 S23: -0.1415 REMARK 3 S31: 0.1616 S32: 0.2642 S33: -0.0181 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 104 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7827 -9.7006 5.1376 REMARK 3 T TENSOR REMARK 3 T11: 0.3712 T22: 0.2988 REMARK 3 T33: 0.2072 T12: 0.1538 REMARK 3 T13: -0.0095 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 7.9209 L22: 8.5888 REMARK 3 L33: 5.9224 L12: 4.1904 REMARK 3 L13: -3.5774 L23: -1.6405 REMARK 3 S TENSOR REMARK 3 S11: -0.0756 S12: 0.9047 S13: -0.9100 REMARK 3 S21: -0.4341 S22: -0.0846 S23: -0.4840 REMARK 3 S31: 0.9811 S32: 0.1629 S33: 0.2238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DNL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234869. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95370 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 44.965 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09900 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : 0.53100 REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M ZINC ACETATE DEHYDRATE, 0.1 M REMARK 280 SODIUM CACODYLATE TRIHYDRATE PH 7.5 AND 18% W/V PEG 8000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 14.03000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -196.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 323 O HOH A 364 1.72 REMARK 500 O HOH A 355 O HOH A 373 1.95 REMARK 500 O HOH A 361 O HOH A 389 1.95 REMARK 500 O HOH A 305 O HOH A 308 1.98 REMARK 500 O HOH A 301 O HOH A 367 2.01 REMARK 500 O HOH A 373 O HOH A 374 2.04 REMARK 500 OE2 GLU A 112 O HOH A 301 2.04 REMARK 500 O HOH A 388 O HOH A 391 2.07 REMARK 500 N MET A 1 O HOH A 302 2.11 REMARK 500 O ACT A 211 O HOH A 303 2.12 REMARK 500 OE2 GLU A 56 O HOH A 304 2.12 REMARK 500 O HOH A 355 O HOH A 374 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 350 O HOH A 369 2545 1.83 REMARK 500 O HOH A 376 O HOH A 394 1545 2.03 REMARK 500 O HOH A 303 O HOH A 352 1565 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -58.48 -127.60 REMARK 500 ASP A 54 97.55 73.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 4 OD2 REMARK 620 2 GLU A 76 OE2 83.9 REMARK 620 3 ACT A 210 OXT 148.5 124.6 REMARK 620 4 ACT A 210 O 97.0 175.2 53.4 REMARK 620 5 HOH A 337 O 106.4 57.7 82.7 117.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 205 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD1 REMARK 620 2 ASP A 13 OD2 55.8 REMARK 620 3 GLU A 69 OE2 93.6 77.4 REMARK 620 4 HOH A 309 O 84.2 70.7 9.5 REMARK 620 5 HOH A 366 O 87.0 65.3 12.0 8.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 ASP A 21 OD2 110.9 REMARK 620 3 HIS A 50 ND1 61.3 109.6 REMARK 620 4 HOH A 350 O 109.4 98.0 48.4 REMARK 620 5 HOH A 369 O 92.9 140.6 54.6 43.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 206 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 27 OD2 REMARK 620 2 CYS A 36 SG 116.3 REMARK 620 3 ACT A 209 O 113.0 109.9 REMARK 620 4 HOH A 364 O 97.9 116.6 101.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 ASP A 62 OD2 142.1 REMARK 620 3 GLU A 96 OE1 83.9 63.2 REMARK 620 4 HOH A 356 O 124.2 90.1 120.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 208 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 31 OD1 REMARK 620 2 ASP A 31 OD2 56.0 REMARK 620 3 GLU A 96 OE1 29.1 62.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 207 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 33 SG REMARK 620 2 CYS A 36 SG 119.3 REMARK 620 3 ACT A 209 OXT 115.9 109.6 REMARK 620 4 HOH A 307 O 118.8 98.8 89.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 337 O REMARK 620 2 HOH A 358 O 115.5 REMARK 620 3 HOH A 366 O 86.1 109.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 211 DBREF1 6DNL A 1 115 UNP A0A0Y6T358_NEIME DBREF2 6DNL A A0A0Y6T358 487 601 SEQRES 1 A 115 MET PHE ALA ASP THR ALA ALA LEU LYS ALA ALA MET ASP SEQRES 2 A 115 THR ALA LEU LYS GLU HIS PRO ASP LYS PRO VAL VAL LEU SEQRES 3 A 115 ASP PHE TYR ALA ASP TRP CYS ILE SER CYS LYS GLU MET SEQRES 4 A 115 ALA ALA TYR THR LEU ASN GLN PRO GLU VAL HIS GLN ALA SEQRES 5 A 115 VAL ASP MET GLU ARG PHE PHE GLN ILE ASP VAL THR ALA SEQRES 6 A 115 ASN LYS PRO GLU HIS GLN ALA LEU LEU LYS GLU TYR GLY SEQRES 7 A 115 LEU PHE GLY PRO PRO GLY VAL PHE VAL VAL ARG SER ASP SEQRES 8 A 115 GLY SER ARG SER GLU PRO LEU LEU GLY PHE VAL LYS ALA SEQRES 9 A 115 ASP LYS PHE ILE GLU TRP TYR GLU GLN ASN ARG HET ZN A 201 1 HET ZN A 202 1 HET ZN A 203 1 HET ZN A 204 1 HET ZN A 205 1 HET ZN A 206 1 HET ZN A 207 1 HET ZN A 208 1 HET ACT A 209 7 HET ACT A 210 7 HET ACT A 211 7 HETNAM ZN ZINC ION HETNAM ACT ACETATE ION FORMUL 2 ZN 8(ZN 2+) FORMUL 10 ACT 3(C2 H3 O2 1-) FORMUL 13 HOH *94(H2 O) HELIX 1 AA1 ASP A 4 HIS A 19 1 16 HELIX 2 AA2 CYS A 33 THR A 43 1 11 HELIX 3 AA3 GLN A 46 ASP A 54 1 9 HELIX 4 AA4 LYS A 67 GLY A 78 1 12 HELIX 5 AA5 LYS A 103 ASN A 114 1 12 SHEET 1 AA1 3 PHE A 58 ASP A 62 0 SHEET 2 AA1 3 VAL A 24 TYR A 29 1 N VAL A 25 O PHE A 59 SHEET 3 AA1 3 VAL A 85 VAL A 88 -1 O VAL A 88 N VAL A 24 LINK OD2 ASP A 4 ZN ZN A 204 1555 1555 2.00 LINK OD1 ASP A 13 ZN ZN A 205 1555 2546 2.40 LINK OD2 ASP A 13 ZN ZN A 205 1555 2546 2.29 LINK NE2 HIS A 19 ZN ZN A 202 1555 1555 2.04 LINK OD2 ASP A 21 ZN ZN A 202 1555 1555 1.83 LINK OD2 ASP A 27 ZN ZN A 206 1555 1555 2.02 LINK OD1 ASP A 31 ZN ZN A 203 1555 1555 2.65 LINK OD1 ASP A 31 ZN ZN A 208 1555 1555 2.50 LINK OD2 ASP A 31 ZN ZN A 208 1555 1555 2.10 LINK SG CYS A 33 ZN ZN A 207 1555 1555 2.25 LINK SG CYS A 36 ZN ZN A 206 1555 1555 2.31 LINK SG CYS A 36 ZN ZN A 207 1555 1555 2.23 LINK ND1 HIS A 50 ZN ZN A 202 1555 2555 2.04 LINK OD2 ASP A 62 ZN ZN A 203 1555 1555 2.12 LINK OE2 GLU A 69 ZN ZN A 205 1555 1555 2.00 LINK OE2 GLU A 76 ZN ZN A 204 1555 2546 2.03 LINK OE1 GLU A 96 ZN ZN A 203 1555 1545 2.58 LINK OE1 GLU A 96 ZN ZN A 208 1555 1545 2.47 LINK ZN ZN A 201 O HOH A 337 1555 2556 1.84 LINK ZN ZN A 201 O HOH A 358 1555 1555 2.15 LINK ZN ZN A 201 O HOH A 366 1555 1555 1.93 LINK ZN ZN A 202 O HOH A 350 1555 1555 2.12 LINK ZN ZN A 202 O HOH A 369 1555 2545 2.66 LINK ZN ZN A 203 O HOH A 356 1555 1555 2.20 LINK ZN ZN A 204 OXT ACT A 210 1555 1555 2.64 LINK ZN ZN A 204 O ACT A 210 1555 1555 2.10 LINK ZN ZN A 204 O HOH A 337 1555 2556 1.85 LINK ZN ZN A 205 O HOH A 309 1555 2556 2.03 LINK ZN ZN A 205 O HOH A 366 1555 1555 1.93 LINK ZN ZN A 206 O ACT A 209 1555 1555 2.08 LINK ZN ZN A 206 O HOH A 364 1555 1555 2.18 LINK ZN ZN A 207 OXT ACT A 209 1555 1555 2.02 LINK ZN ZN A 207 O HOH A 307 1555 1555 2.19 CISPEP 1 PRO A 82 PRO A 83 0 2.64 SITE 1 AC1 5 ZN A 204 ZN A 205 ACT A 210 HOH A 358 SITE 2 AC1 5 HOH A 366 SITE 1 AC2 3 HIS A 19 ASP A 21 HOH A 350 SITE 1 AC3 6 ASP A 31 ASP A 62 THR A 64 GLU A 96 SITE 2 AC3 6 ZN A 208 HOH A 356 SITE 1 AC4 3 ASP A 4 ZN A 201 ACT A 210 SITE 1 AC5 3 GLU A 69 ZN A 201 HOH A 366 SITE 1 AC6 6 ASP A 27 CYS A 36 ZN A 207 ACT A 209 SITE 2 AC6 6 HOH A 323 HOH A 364 SITE 1 AC7 5 CYS A 33 CYS A 36 ZN A 206 ACT A 209 SITE 2 AC7 5 HOH A 307 SITE 1 AC8 4 ASP A 31 GLU A 96 ZN A 203 ACT A 211 SITE 1 AC9 11 ASP A 27 CYS A 33 SER A 35 CYS A 36 SITE 2 AC9 11 MET A 39 PRO A 83 VAL A 85 GLY A 100 SITE 3 AC9 11 ZN A 206 ZN A 207 HOH A 307 SITE 1 AD1 4 ASP A 4 ZN A 201 ZN A 204 HOH A 358 SITE 1 AD2 6 LEU A 79 PRO A 97 LEU A 99 ZN A 208 SITE 2 AD2 6 HOH A 303 HOH A 361 CRYST1 43.250 28.060 45.800 90.00 100.96 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023121 0.000000 0.004478 0.00000 SCALE2 0.000000 0.035638 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022240 0.00000