HEADER SIGNALING PROTEIN 07-JUN-18 6DNO TITLE CRYSTAL STRUCTURE OF PROTEIN PHOSPHATASE 1 (PP1) BOUND TO THE MUSCLE TITLE 2 GLYCOGEN-TARGETING SUBUNIT (GM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-ALPHA CATALYTIC COMPND 3 SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 7-300; COMPND 6 SYNONYM: PP-1A; COMPND 7 EC: 3.1.3.16; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 3A; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: RESIDUES 64-93; COMPND 13 SYNONYM: PROTEIN PHOSPHATASE 1 GLYCOGEN-ASSOCIATED REGULATORY COMPND 14 SUBUNIT,PROTEIN PHOSPHATASE TYPE-1 GLYCOGEN TARGETING SUBUNIT,RG1; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 3; COMPND 17 MOLECULE: MICROCYSTIN-LR; COMPND 18 CHAIN: C; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PPP1CA, PPP1A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ORYCTOLAGUS CUNICULUS; SOURCE 11 ORGANISM_COMMON: RABBIT; SOURCE 12 ORGANISM_TAXID: 9986; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS INHIBITOR, COMPLEX, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX, KEYWDS 2 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.S.CHOY,G.S.KUMAR,W.PETI,R.PAGE REVDAT 4 15-NOV-23 6DNO 1 LINK ATOM REVDAT 3 11-OCT-23 6DNO 1 LINK REVDAT 2 11-DEC-19 6DNO 1 REMARK REVDAT 1 23-JAN-19 6DNO 0 JRNL AUTH G.S.KUMAR,M.S.CHOY,D.M.KOVEAL,M.K.LORINSKY,S.P.LYONS, JRNL AUTH 2 A.N.KETTENBACH,R.PAGE,W.PETI JRNL TITL IDENTIFICATION OF THE SUBSTRATE RECRUITMENT MECHANISM OF THE JRNL TITL 2 MUSCLE GLYCOGEN PROTEIN PHOSPHATASE 1 HOLOENZYME. JRNL REF SCI ADV V. 4 U6044 2018 JRNL REFN ESSN 2375-2548 JRNL PMID 30443599 JRNL DOI 10.1126/SCIADV.AAU6044 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 56035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.780 REMARK 3 FREE R VALUE TEST SET COUNT : 2680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9290 - 3.8689 0.99 3012 152 0.1543 0.1779 REMARK 3 2 3.8689 - 3.0713 1.00 2905 161 0.1626 0.1882 REMARK 3 3 3.0713 - 2.6832 0.99 2893 114 0.1809 0.1924 REMARK 3 4 2.6832 - 2.4379 0.99 2864 128 0.1881 0.2130 REMARK 3 5 2.4379 - 2.2632 1.00 2879 130 0.1785 0.2040 REMARK 3 6 2.2632 - 2.1297 1.00 2818 164 0.1857 0.2196 REMARK 3 7 2.1297 - 2.0231 1.00 2828 151 0.1807 0.2120 REMARK 3 8 2.0231 - 1.9350 1.00 2826 144 0.1999 0.1895 REMARK 3 9 1.9350 - 1.8605 1.00 2837 143 0.2023 0.2529 REMARK 3 10 1.8605 - 1.7963 1.00 2842 159 0.2072 0.2319 REMARK 3 11 1.7963 - 1.7402 1.00 2821 150 0.2117 0.2368 REMARK 3 12 1.7402 - 1.6904 1.00 2834 125 0.2155 0.2525 REMARK 3 13 1.6904 - 1.6459 1.00 2810 134 0.2273 0.2351 REMARK 3 14 1.6459 - 1.6058 1.00 2839 148 0.2408 0.2497 REMARK 3 15 1.6058 - 1.5693 1.00 2840 135 0.2495 0.2541 REMARK 3 16 1.5693 - 1.5359 1.00 2793 139 0.2640 0.2744 REMARK 3 17 1.5359 - 1.5051 1.00 2835 143 0.2679 0.3019 REMARK 3 18 1.5051 - 1.4767 0.99 2785 145 0.2936 0.3331 REMARK 3 19 1.4767 - 1.4504 0.74 2094 115 0.3303 0.3609 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2698 REMARK 3 ANGLE : 0.963 3650 REMARK 3 CHIRALITY : 0.081 390 REMARK 3 PLANARITY : 0.004 478 REMARK 3 DIHEDRAL : 21.863 988 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235005. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS OCT 15, 2015 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.17 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56091 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 1.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 2.5.6 REMARK 200 STARTING MODEL: 4MOV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M MAGNESIUM FORMATE DIHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE, PH 4.6, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.17750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.17750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.23800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.87200 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.23800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.87200 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 80.17750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.23800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 32.87200 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.17750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.23800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 32.87200 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 102 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE MICROCYSTIN LR IS OLIGOPEPTIDE, A MEMBER OF TOXIN CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: MICROCYSTIN LR REMARK 400 CHAIN: C REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 SER A 6 REMARK 465 GLU B 86 REMARK 465 LEU B 87 REMARK 465 PRO B 88 REMARK 465 SER B 89 REMARK 465 VAL B 90 REMARK 465 SER B 91 REMARK 465 THR B 92 REMARK 465 THR B 93 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 26 CD CE NZ REMARK 470 LYS A 98 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 273 CB DAM C 7 1.94 REMARK 500 O HOH B 105 O HOH B 117 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DAL C 1 C LEU C 2 N 0.179 REMARK 500 LEU C 2 C ACB C 3 N 0.176 REMARK 500 ARG C 4 NE ARG C 4 CZ 0.135 REMARK 500 ARG C 4 CZ ARG C 4 NH1 0.124 REMARK 500 ARG C 4 C 1ZN C 5 N 0.201 REMARK 500 1ZN C 5 C FGA C 6 N 0.174 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 92 61.28 61.06 REMARK 500 ASP A 95 152.19 78.57 REMARK 500 ARG A 96 -55.39 73.64 REMARK 500 TYR A 144 -106.39 -136.70 REMARK 500 SER A 224 -153.89 62.67 REMARK 500 ALA A 247 -133.82 -134.83 REMARK 500 HIS A 248 -14.45 79.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 1ZN C 5 FGA C 6 139.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1ZN C 5 -18.40 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DNO A 7 300 UNP P62136 PP1A_HUMAN 7 300 DBREF 6DNO B 64 93 UNP Q00756 PPR3A_RABIT 64 93 DBREF 6DNO C 1 7 PDB 6DNO 6DNO 1 7 SEQADV 6DNO GLY A 2 UNP P62136 EXPRESSION TAG SEQADV 6DNO HIS A 3 UNP P62136 EXPRESSION TAG SEQADV 6DNO MET A 4 UNP P62136 EXPRESSION TAG SEQADV 6DNO GLY A 5 UNP P62136 EXPRESSION TAG SEQADV 6DNO SER A 6 UNP P62136 EXPRESSION TAG SEQRES 1 A 299 GLY HIS MET GLY SER LEU ASN LEU ASP SER ILE ILE GLY SEQRES 2 A 299 ARG LEU LEU GLU VAL GLN GLY SER ARG PRO GLY LYS ASN SEQRES 3 A 299 VAL GLN LEU THR GLU ASN GLU ILE ARG GLY LEU CYS LEU SEQRES 4 A 299 LYS SER ARG GLU ILE PHE LEU SER GLN PRO ILE LEU LEU SEQRES 5 A 299 GLU LEU GLU ALA PRO LEU LYS ILE CYS GLY ASP ILE HIS SEQRES 6 A 299 GLY GLN TYR TYR ASP LEU LEU ARG LEU PHE GLU TYR GLY SEQRES 7 A 299 GLY PHE PRO PRO GLU SER ASN TYR LEU PHE LEU GLY ASP SEQRES 8 A 299 TYR VAL ASP ARG GLY LYS GLN SER LEU GLU THR ILE CYS SEQRES 9 A 299 LEU LEU LEU ALA TYR LYS ILE LYS TYR PRO GLU ASN PHE SEQRES 10 A 299 PHE LEU LEU ARG GLY ASN HIS GLU CYS ALA SER ILE ASN SEQRES 11 A 299 ARG ILE TYR GLY PHE TYR ASP GLU CYS LYS ARG ARG TYR SEQRES 12 A 299 ASN ILE LYS LEU TRP LYS THR PHE THR ASP CYS PHE ASN SEQRES 13 A 299 CYS LEU PRO ILE ALA ALA ILE VAL ASP GLU LYS ILE PHE SEQRES 14 A 299 CYS CYS HIS GLY GLY LEU SER PRO ASP LEU GLN SER MET SEQRES 15 A 299 GLU GLN ILE ARG ARG ILE MET ARG PRO THR ASP VAL PRO SEQRES 16 A 299 ASP GLN GLY LEU LEU CYS ASP LEU LEU TRP SER ASP PRO SEQRES 17 A 299 ASP LYS ASP VAL GLN GLY TRP GLY GLU ASN ASP ARG GLY SEQRES 18 A 299 VAL SER PHE THR PHE GLY ALA GLU VAL VAL ALA LYS PHE SEQRES 19 A 299 LEU HIS LYS HIS ASP LEU ASP LEU ILE CYS ARG ALA HIS SEQRES 20 A 299 GLN VAL VAL GLU ASP GLY TYR GLU PHE PHE ALA LYS ARG SEQRES 21 A 299 GLN LEU VAL THR LEU PHE SER ALA PRO ASN TYR CYS GLY SEQRES 22 A 299 GLU PHE ASP ASN ALA GLY ALA MET MET SER VAL ASP GLU SEQRES 23 A 299 THR LEU MET CYS SER PHE GLN ILE LEU LYS PRO ALA ASP SEQRES 1 B 30 ARG ARG VAL SER PHE ALA ASP ASN PHE GLY PHE ASN LEU SEQRES 2 B 30 VAL SER VAL LYS GLU PHE ASP THR TRP GLU LEU PRO SER SEQRES 3 B 30 VAL SER THR THR SEQRES 1 C 7 DAL LEU ACB ARG 1ZN FGA DAM HET DAL C 1 5 HET ACB C 3 9 HET 1ZN C 5 23 HET FGA C 6 9 HET DAM C 7 6 HETNAM DAL D-ALANINE HETNAM ACB 3-METHYL-BETA-D-ASPARTIC ACID HETNAM 1ZN (2S,3S,4E,6E,8S,9S)-3-AMINO-9-METHOXY-2,6,8-TRIMETHYL- HETNAM 2 1ZN 10-PHENYLDECA-4,6-DIENOIC ACID HETNAM FGA GAMMA-D-GLUTAMIC ACID HETNAM DAM N-METHYL-ALPHA-BETA-DEHYDROALANINE HETSYN ACB (3S)-3-METHYL-D-ASPARTIC ACID; D-METHYL ASPARTIC ACID HETSYN FGA D-GLUTAMIC ACID FORMUL 3 DAL C3 H7 N O2 FORMUL 3 ACB C5 H9 N O4 FORMUL 3 1ZN C20 H29 N O3 FORMUL 3 FGA C5 H9 N O4 FORMUL 3 DAM C4 H7 N O2 FORMUL 4 HOH *147(H2 O) HELIX 1 AA1 ASN A 8 LEU A 17 1 10 HELIX 2 AA2 GLU A 18 GLN A 20 5 3 HELIX 3 AA3 THR A 31 GLN A 49 1 19 HELIX 4 AA4 GLN A 68 GLY A 80 1 13 HELIX 5 AA5 GLN A 99 TYR A 114 1 16 HELIX 6 AA6 CYS A 127 ARG A 132 1 6 HELIX 7 AA7 GLY A 135 TYR A 144 1 10 HELIX 8 AA8 ASN A 145 ASN A 157 1 13 HELIX 9 AA9 SER A 182 ARG A 188 1 7 HELIX 10 AB1 GLY A 199 SER A 207 1 9 HELIX 11 AB2 GLY A 228 ASP A 240 1 13 HELIX 12 AB3 ASP B 70 GLY B 73 5 4 SHEET 1 AA1 6 LEU A 52 LEU A 55 0 SHEET 2 AA1 6 ALA A 162 VAL A 165 1 O ALA A 162 N LEU A 53 SHEET 3 AA1 6 ILE A 169 CYS A 172 -1 O CYS A 171 N ALA A 163 SHEET 4 AA1 6 LEU A 243 ARG A 246 1 O CYS A 245 N PHE A 170 SHEET 5 AA1 6 LEU A 263 LEU A 266 1 O LEU A 266 N ARG A 246 SHEET 6 AA1 6 TYR A 255 PHE A 258 -1 N GLU A 256 O THR A 265 SHEET 1 AA2 6 PHE A 118 LEU A 120 0 SHEET 2 AA2 6 TYR A 87 PHE A 89 1 N PHE A 89 O PHE A 119 SHEET 3 AA2 6 LEU A 59 CYS A 62 1 N LYS A 60 O LEU A 88 SHEET 4 AA2 6 GLY A 280 VAL A 285 -1 O VAL A 285 N LEU A 59 SHEET 5 AA2 6 MET A 290 PRO A 298 -1 O LEU A 296 N GLY A 280 SHEET 6 AA2 6 SER B 67 PHE B 68 1 O SER B 67 N CYS A 291 SHEET 1 AA3 6 PHE A 118 LEU A 120 0 SHEET 2 AA3 6 TYR A 87 PHE A 89 1 N PHE A 89 O PHE A 119 SHEET 3 AA3 6 LEU A 59 CYS A 62 1 N LYS A 60 O LEU A 88 SHEET 4 AA3 6 GLY A 280 VAL A 285 -1 O VAL A 285 N LEU A 59 SHEET 5 AA3 6 MET A 290 PRO A 298 -1 O LEU A 296 N GLY A 280 SHEET 6 AA3 6 VAL B 77 PHE B 82 1 O SER B 78 N ILE A 295 SHEET 1 AA4 3 ASP A 208 PRO A 209 0 SHEET 2 AA4 3 PHE A 225 PHE A 227 1 O PHE A 227 N ASP A 208 SHEET 3 AA4 3 TRP A 216 GLU A 218 -1 N GLY A 217 O THR A 226 LINK SG CYS A 273 CB DAM C 7 1555 1555 1.77 LINK C DAL C 1 N LEU C 2 1555 1555 1.52 LINK N DAL C 1 C DAM C 7 1555 1555 1.50 LINK C LEU C 2 N ACB C 3 1555 1555 1.51 LINK CG ACB C 3 N ARG C 4 1555 1555 1.52 LINK C ARG C 4 N 1ZN C 5 1555 1555 1.54 LINK C 1ZN C 5 N FGA C 6 1555 1555 1.51 LINK CD FGA C 6 N DAM C 7 1555 1555 1.50 CISPEP 1 ALA A 57 PRO A 58 0 4.24 CISPEP 2 PRO A 82 PRO A 83 0 4.07 CISPEP 3 ARG A 191 PRO A 192 0 0.35 CRYST1 60.476 65.744 160.355 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016535 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015210 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006236 0.00000