HEADER HYDROLASE 07-JUN-18 6DNS TITLE ENDO-FUCOIDAN HYDROLASE MFFCNA9 FROM GLYCOSIDE HYDROLASE FAMILY 107 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1,4-ENDOFUCOIDANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINIFLEXILE FUCANIVORANS; SOURCE 3 ORGANISM_TAXID: 264023; SOURCE 4 GENE: FCNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUCAN, FUCOIDAN, GLYCOSIDE HYDROLASE, RETAINING MECHANISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.VICKERS,K.ABE,O.SALAMA-ALBER,A.B.BORASTON REVDAT 4 13-MAR-24 6DNS 1 REMARK REVDAT 3 05-DEC-18 6DNS 1 JRNL REVDAT 2 17-OCT-18 6DNS 1 JRNL REVDAT 1 03-OCT-18 6DNS 0 JRNL AUTH C.VICKERS,F.LIU,K.ABE,O.SALAMA-ALBER,M.JENKINS, JRNL AUTH 2 C.M.K.SPRINGATE,J.E.BURKE,S.G.WITHERS,A.B.BORASTON JRNL TITL ENDO-FUCOIDAN HYDROLASES FROM GLYCOSIDE HYDROLASE FAMILY 107 JRNL TITL 2 (GH107) DISPLAY STRUCTURAL AND MECHANISTIC SIMILARITIES TO JRNL TITL 3 ALPHA-L-FUCOSIDASES FROM GH29. JRNL REF J. BIOL. CHEM. V. 293 18296 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30282808 JRNL DOI 10.1074/JBC.RA118.005134 REMARK 2 REMARK 2 RESOLUTION. 2.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0189 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 29237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1484 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.24 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.30 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1792 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.3260 REMARK 3 BIN FREE R VALUE SET COUNT : 81 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4569 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 65 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.22000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.385 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.207 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.735 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4701 ; 0.007 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3996 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6440 ; 1.013 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9280 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 5.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;34.573 ;24.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 654 ;11.405 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 8.539 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 701 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5377 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 988 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DNS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235029. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31364 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.240 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.24 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M BIS-TRIS (PH5.6), REMARK 280 19% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 162.19750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 30.95700 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 30.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 243.29625 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 30.95700 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 30.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.09875 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 30.95700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.95700 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 243.29625 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 30.95700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.95700 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 81.09875 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 162.19750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 LEU A 5 REMARK 465 PRO A 6 REMARK 465 THR A 7 REMARK 465 LYS A 8 REMARK 465 LYS A 9 REMARK 465 SER A 10 REMARK 465 ASN A 11 REMARK 465 LEU A 12 REMARK 465 TRP A 13 REMARK 465 PHE A 14 REMARK 465 LEU A 15 REMARK 465 MET A 16 REMARK 465 ALA A 17 REMARK 465 CYS A 18 REMARK 465 LEU A 19 REMARK 465 ILE A 20 REMARK 465 ILE A 21 REMARK 465 THR A 22 REMARK 465 PHE A 23 REMARK 465 HIS A 24 REMARK 465 LYS A 25 REMARK 465 VAL A 26 REMARK 465 GLU A 27 REMARK 465 ALA A 28 REMARK 465 GLN A 29 REMARK 465 VAL A 30 REMARK 465 LYS A 546 REMARK 465 GLY A 610 REMARK 465 ASP A 623 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 31 CG CD REMARK 470 LYS A 73 CG CD CE NZ REMARK 470 GLU A 159 CG CD OE1 OE2 REMARK 470 ASP A 177 O REMARK 470 THR A 180 OG1 CG2 REMARK 470 GLU A 181 CG CD OE1 OE2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLU A 362 CD OE1 OE2 REMARK 470 LYS A 541 CG CD CE NZ REMARK 470 THR A 543 OG1 CG2 REMARK 470 LEU A 545 CG CD1 CD2 REMARK 470 GLU A 600 CG CD OE1 OE2 REMARK 470 ILE A 611 CG1 CG2 CD1 REMARK 470 LEU A 612 CG CD1 CD2 REMARK 470 ASP A 615 CG OD1 OD2 REMARK 470 LYS A 619 CG CD CE NZ REMARK 470 THR A 621 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 158.77 -48.45 REMARK 500 ASN A 89 -120.84 57.00 REMARK 500 ASN A 152 -126.87 46.95 REMARK 500 TYR A 165 63.00 -153.84 REMARK 500 ARG A 197 51.72 -97.91 REMARK 500 ASN A 271 50.38 -107.37 REMARK 500 SER A 272 172.87 61.92 REMARK 500 THR A 331 34.39 -92.33 REMARK 500 THR A 349 -85.70 -98.12 REMARK 500 LEU A 395 56.00 -93.39 REMARK 500 ARG A 425 -137.96 59.77 REMARK 500 VAL A 447 -79.66 -90.12 REMARK 500 ALA A 491 53.99 -154.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 77 O REMARK 620 2 ASP A 79 OD1 86.1 REMARK 620 3 ASP A 79 OD2 74.4 44.6 REMARK 620 4 HOH A 838 O 160.8 84.6 87.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE A 327 O REMARK 620 2 ASP A 330 OD1 90.8 REMARK 620 3 ARG A 332 O 121.1 80.2 REMARK 620 4 ASN A 335 OD1 62.5 71.9 59.4 REMARK 620 5 ASP A 336 OD1 83.6 150.0 77.6 79.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 419 O REMARK 620 2 ASP A 451 OD1 119.1 REMARK 620 3 GLU A 453 OE2 87.3 91.6 REMARK 620 4 ASP A 502 OD2 82.0 69.9 150.1 REMARK 620 5 ASP A 504 OD1 83.8 157.0 86.1 120.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 705 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 528 O REMARK 620 2 ASP A 560 OD2 89.3 REMARK 620 3 GLU A 562 OE1 82.7 76.9 REMARK 620 4 ASP A 564 OD2 158.9 109.8 109.5 REMARK 620 5 ASP A 609 OD2 77.0 94.8 158.2 92.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 706 DBREF 6DNS A 1 623 UNP Q08I46 Q08I46_9FLAO 1 623 SEQRES 1 A 623 MET LYS LYS THR LEU PRO THR LYS LYS SER ASN LEU TRP SEQRES 2 A 623 PHE LEU MET ALA CYS LEU ILE ILE THR PHE HIS LYS VAL SEQRES 3 A 623 GLU ALA GLN VAL PRO ASP PRO ASN GLN GLY LEU ARG ALA SEQRES 4 A 623 GLU TRP MET ARG GLY ALA LEU GLY MET LEU TRP LEU PRO SEQRES 5 A 623 GLU ARG THR PHE ASN GLY ASN ILE GLU GLY ILE ARG ILE SEQRES 6 A 623 ASP ASP PHE LEU THR GLN ILE LYS ASP ILE ARG THR VAL SEQRES 7 A 623 ASP TYR VAL GLN LEU PRO LEU THR SER PRO ASN ILE PHE SEQRES 8 A 623 SER PRO THR HIS VAL ALA PRO HIS PRO ILE ILE GLU SER SEQRES 9 A 623 LEU TRP GLN GLY ASP THR ASP ALA ASN GLY ASP PRO ILE SEQRES 10 A 623 ASN LEU VAL ALA PRO ARG GLU SER VAL ASP ASP PRO LEU SEQRES 11 A 623 LEU SER TRP LEU LYS ALA LEU ARG ALA ALA GLY LEU ARG SEQRES 12 A 623 THR GLU ILE TYR VAL ASN SER TYR ASN LEU LEU ALA ARG SEQRES 13 A 623 ILE PRO GLU ASP THR GLN ALA ASP TYR PRO ASP VAL SER SEQRES 14 A 623 ALA ARG TRP MET GLU TRP CYS ASP THR ASN THR GLU ALA SEQRES 15 A 623 GLN ALA PHE ILE ASN SER GLN THR TYR HIS GLU GLY ASN SEQRES 16 A 623 GLY ARG ARG LYS TYR MET PHE CYS TYR ALA GLU PHE ILE SEQRES 17 A 623 LEU LYS GLU TYR ALA GLN ARG TYR GLY ASP LEU ILE ASP SEQRES 18 A 623 ALA TRP CYS PHE ASP SER ALA ASP ASN VAL MET GLU ASP SEQRES 19 A 623 GLU CYS GLY ASP ASP PRO ALA SER GLU ASP VAL ASN ASP SEQRES 20 A 623 GLN ARG ILE TYR GLN ALA PHE ALA ASP ALA CYS HIS ALA SEQRES 21 A 623 GLY ASN PRO ASN ALA ALA ILE ALA PHE ASN ASN SER VAL SEQRES 22 A 623 GLY ASP ARG GLU GLY ASN PRO PHE THR SER ALA THR LEU SEQRES 23 A 623 PHE ASP ASP TYR THR PHE GLY HIS PRO PHE GLY GLY ALA SEQRES 24 A 623 GLY ASN MET VAL VAL PRO GLU ALA LEU TYR THR TYR ASN SEQRES 25 A 623 HIS ASP LEU VAL VAL PHE MET GLN THR ASN ASN GLY TYR SEQRES 26 A 623 ALA PHE ARG ASP ASP THR ARG THR TRP ASN ASP ASN VAL SEQRES 27 A 623 VAL ALA HIS PHE PHE PRO LYS GLN SER THR THR SER TRP SEQRES 28 A 623 ASN ALA GLY ASN THR PRO CYS LEU THR ASP GLU GLN PHE SEQRES 29 A 623 VAL GLU TRP THR SER THR GLY ILE VAL ASN GLY GLY GLY SEQRES 30 A 623 ILE THR TRP GLY THR PRO LEU VAL ARG THR ASN LEU GLU SEQRES 31 A 623 ASN ALA PRO VAL LEU THR LEU GLN PRO TYR ALA LEU ASN SEQRES 32 A 623 GLN PHE GLU LEU THR ASP THR TYR LEU LYS GLU PHE GLN SEQRES 33 A 623 SER PRO GLY LYS PRO ASN TRP SER ARG GLN TYR THR ILE SEQRES 34 A 623 LEU PRO ALA ILE TYR PRO GLY GLN PRO TYR SER HIS ASN SEQRES 35 A 623 LEU VAL GLU GLY VAL ASP PHE TRP ASP PRO GLU GLY VAL SEQRES 36 A 623 GLY ILE THR GLY LEU THR ALA SER GLY THR LEU PRO ALA SEQRES 37 A 623 TRP LEU THR ILE SER GLN THR ALA THR GLY THR TRP THR SEQRES 38 A 623 LEU SER GLY THR PRO PRO VAL SER GLU ALA SER ASN TYR SEQRES 39 A 623 THR PHE GLU LEU MET ALA GLN ASP SER ASP GLY VAL THR SEQRES 40 A 623 ASN ARG GLU VAL LYS LEU GLU VAL ILE SER HIS PRO ALA SEQRES 41 A 623 GLY PHE THR ASN PRO GLY ASP GLY THR PRO VAL TRP PHE SEQRES 42 A 623 SER ASN PRO MET VAL LEU ALA LYS ALA THR ALA LEU LYS SEQRES 43 A 623 ASP TYR GLY SER LEU LEU LYS LEU GLY VAL ASP PHE TYR SEQRES 44 A 623 ASP PHE GLU GLY ASP VAL LEU THR ILE THR LYS THR SER SEQRES 45 A 623 GLY PRO ASP TRP LEU VAL LEU THR GLN ASN SER ASP ASP SEQRES 46 A 623 THR TRP ARG LEU SER GLY MET PRO THR ALA ALA ASP ALA SEQRES 47 A 623 GLY GLU ASN SER PHE THR PHE ASN VAL SER ASP GLY ILE SEQRES 48 A 623 LEU SER SER ASP THR GLU ILE LYS ILE THR VAL ASP HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HET CA A 704 1 HET CA A 705 1 HET EDO A 706 4 HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 CA 5(CA 2+) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *65(H2 O) HELIX 1 AA1 GLY A 36 ARG A 43 5 8 HELIX 2 AA2 ILE A 65 ILE A 72 1 8 HELIX 3 AA3 PRO A 88 SER A 92 5 5 HELIX 4 AA4 HIS A 99 LEU A 105 1 7 HELIX 5 AA5 ASP A 128 ALA A 140 1 13 HELIX 6 AA6 ASP A 167 ASP A 177 1 11 HELIX 7 AA7 ASN A 179 SER A 188 1 10 HELIX 8 AA8 GLN A 189 GLU A 193 5 5 HELIX 9 AA9 ARG A 197 ILE A 208 1 12 HELIX 10 AB1 ILE A 208 GLY A 217 1 10 HELIX 11 AB2 ASP A 218 ILE A 220 5 3 HELIX 12 AB3 SER A 227 MET A 232 1 6 HELIX 13 AB4 ASP A 244 ASP A 247 5 4 HELIX 14 AB5 GLN A 248 ASN A 262 1 15 HELIX 15 AB6 PRO A 305 ASN A 322 1 18 HELIX 16 AB7 THR A 360 VAL A 373 1 14 HELIX 17 AB8 GLN A 398 GLN A 416 1 19 HELIX 18 AB9 THR A 594 ALA A 598 5 5 SHEET 1 AA1 7 ALA A 266 PHE A 269 0 SHEET 2 AA1 7 ALA A 222 ASP A 226 1 N PHE A 225 O ALA A 268 SHEET 3 AA1 7 ARG A 143 ASN A 149 1 N ILE A 146 O CYS A 224 SHEET 4 AA1 7 TYR A 80 PRO A 84 1 N LEU A 83 O GLU A 145 SHEET 5 AA1 7 LEU A 46 LEU A 49 1 N MET A 48 O GLN A 82 SHEET 6 AA1 7 GLY A 377 THR A 379 1 O ILE A 378 N GLY A 47 SHEET 7 AA1 7 HIS A 341 PHE A 342 1 N PHE A 342 O THR A 379 SHEET 1 AA2 2 LEU A 384 ARG A 386 0 SHEET 2 AA2 2 VAL A 394 LEU A 397 -1 O VAL A 394 N ARG A 386 SHEET 1 AA3 2 ASN A 422 TRP A 423 0 SHEET 2 AA3 2 PHE A 449 TRP A 450 -1 O TRP A 450 N ASN A 422 SHEET 1 AA4 3 TYR A 439 VAL A 444 0 SHEET 2 AA4 3 THR A 479 GLY A 484 -1 O TRP A 480 N LEU A 443 SHEET 3 AA4 3 THR A 471 ALA A 476 -1 N SER A 473 O THR A 481 SHEET 1 AA5 3 GLY A 459 GLY A 464 0 SHEET 2 AA5 3 TYR A 494 GLN A 501 -1 O MET A 499 N THR A 461 SHEET 3 AA5 3 VAL A 506 LEU A 513 -1 O THR A 507 N ALA A 500 SHEET 1 AA6 2 VAL A 531 TRP A 532 0 SHEET 2 AA6 2 PHE A 558 TYR A 559 -1 O TYR A 559 N VAL A 531 SHEET 1 AA7 3 TYR A 548 LYS A 553 0 SHEET 2 AA7 3 THR A 586 GLY A 591 -1 O LEU A 589 N SER A 550 SHEET 3 AA7 3 VAL A 578 SER A 583 -1 N THR A 580 O ARG A 588 SHEET 1 AA8 3 THR A 567 SER A 572 0 SHEET 2 AA8 3 GLU A 600 SER A 608 -1 O ASN A 606 N THR A 569 SHEET 3 AA8 3 SER A 613 THR A 621 -1 O ILE A 618 N PHE A 603 LINK O THR A 77 CA CA A 702 1555 1555 2.48 LINK OD1 ASP A 79 CA CA A 702 1555 1555 3.01 LINK OD2 ASP A 79 CA CA A 702 1555 1555 2.73 LINK O PHE A 327 CA CA A 701 1555 1555 2.43 LINK OD1 ASP A 330 CA CA A 701 1555 1555 2.32 LINK O ARG A 332 CA CA A 701 1555 1555 2.47 LINK OD1 ASN A 335 CA CA A 701 1555 1555 3.10 LINK OD1 ASP A 336 CA CA A 701 1555 1555 2.34 LINK O GLY A 419 CA CA A 703 1555 1555 2.32 LINK OD1 ASP A 451 CA CA A 703 1555 1555 2.32 LINK OE2 GLU A 453 CA CA A 703 1555 1555 2.41 LINK OD2 ASP A 502 CA CA A 703 1555 1555 2.78 LINK OD1 ASP A 504 CA CA A 703 1555 1555 2.41 LINK O GLY A 528 CA CA A 705 1555 1555 2.44 LINK OD2 ASP A 560 CA CA A 705 1555 1555 2.73 LINK OE1 GLU A 562 CA CA A 705 1555 1555 3.05 LINK OD2 ASP A 564 CA CA A 705 1555 1555 2.45 LINK OD2 ASP A 609 CA CA A 705 1555 1555 2.56 LINK CA CA A 702 O HOH A 838 1555 1555 2.34 LINK CA CA A 704 O HOH A 850 1555 1555 2.38 CISPEP 1 VAL A 304 PRO A 305 0 0.77 CISPEP 2 ASN A 535 PRO A 536 0 -0.41 SITE 1 AC1 6 PHE A 327 ARG A 328 ASP A 330 ARG A 332 SITE 2 AC1 6 ASN A 335 ASP A 336 SITE 1 AC2 3 THR A 77 ASP A 79 HOH A 838 SITE 1 AC3 5 GLY A 419 ASP A 451 GLU A 453 ASP A 502 SITE 2 AC3 5 ASP A 504 SITE 1 AC4 2 GLU A 390 HOH A 850 SITE 1 AC5 5 GLY A 528 ASP A 560 GLU A 562 ASP A 564 SITE 2 AC5 5 ASP A 609 SITE 1 AC6 2 HIS A 294 TRP A 351 CRYST1 61.914 61.914 324.395 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016151 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016151 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003083 0.00000