HEADER OXIDOREDUCTASE 07-JUN-18 6DNU TITLE CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS DSBD C-TERMINAL DOMAIN IN TITLE 2 THE OXIDISED FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN-DISULFIDE REDUCTASE,DISULFIDE REDUCTASE; COMPND 5 EC: 1.8.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NEISSERIA MENINGITIDIS (STRAIN ALPHA14); SOURCE 3 ORGANISM_TAXID: 662598; SOURCE 4 STRAIN: ALPHA14; SOURCE 5 GENE: DSBD, NMO_1340; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS DISULPHIDE REDUCTASE, DSB PROTEINS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR B.HERAS,R.P.SMITH,J.J.PAXMAN REVDAT 3 07-NOV-18 6DNU 1 JRNL REVDAT 2 19-SEP-18 6DNU 1 JRNL REVDAT 1 12-SEP-18 6DNU 0 JRNL AUTH R.P.SMITH,B.MOHANTY,S.MOWLABOCCUS,J.J.PAXMAN,M.L.WILLIAMS, JRNL AUTH 2 S.J.HEADEY,G.WANG,P.SUBEDI,B.C.DOAK,C.M.KAHLER,M.J.SCANLON, JRNL AUTH 3 B.HERAS JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO THE DISULFIDE JRNL TITL 2 REDUCTASE MECHANISM OF DSBD, AN ESSENTIAL ENZYME FOR JRNL TITL 3 NEISSERIAL PATHOGENS. JRNL REF J. BIOL. CHEM. V. 293 16559 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30181210 JRNL DOI 10.1074/JBC.RA118.004847 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.P.SMITH,A.E.WHITTEN,J.J.PAXMAN,C.M.KAHLER,M.J.SCANLON, REMARK 1 AUTH 2 B.HERAS REMARK 1 TITL PRODUCTION, BIOPHYSICAL CHARACTERIZATION AND INITIAL REMARK 1 TITL 2 CRYSTALLIZATION STUDIES OF THE N- AND C-TERMINAL DOMAINS OF REMARK 1 TITL 3 DSBD, AN ESSENTIAL ENZYME IN NEISSERIA MENINGITIDIS. REMARK 1 REF ACTA CRYSTALLOGR F STRUCT V. 74 31 2018 REMARK 1 REF 2 BIOL COMMUN REMARK 1 REFN ESSN 2053-230X REMARK 1 PMID 29372905 REMARK 1 DOI 10.1107/S2053230X17017800 REMARK 2 REMARK 2 RESOLUTION. 2.28 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.28 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 10700 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.820 REMARK 3 FREE R VALUE TEST SET COUNT : 516 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.8004 - 3.6237 0.99 2553 119 0.1692 0.2274 REMARK 3 2 3.6237 - 2.8766 1.00 2583 118 0.2146 0.2614 REMARK 3 3 2.8766 - 2.5131 1.00 2526 140 0.2106 0.3122 REMARK 3 4 2.5131 - 2.2834 1.00 2522 139 0.2094 0.3169 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.65 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1438 0.1749 10.4727 REMARK 3 T TENSOR REMARK 3 T11: 0.4638 T22: 0.4102 REMARK 3 T33: 0.5343 T12: 0.1394 REMARK 3 T13: -0.0679 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 9.7037 L22: 9.8420 REMARK 3 L33: 7.9004 L12: 6.1162 REMARK 3 L13: 4.3539 L23: 2.7838 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: -0.1496 S13: 0.4946 REMARK 3 S21: 0.8174 S22: 0.1078 S23: -0.3066 REMARK 3 S31: -0.5151 S32: 0.0640 S33: -0.0400 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8547 -1.1511 -2.3865 REMARK 3 T TENSOR REMARK 3 T11: 0.3132 T22: 0.3396 REMARK 3 T33: 0.3668 T12: 0.0465 REMARK 3 T13: -0.0302 T23: 0.0426 REMARK 3 L TENSOR REMARK 3 L11: 5.0423 L22: 3.7824 REMARK 3 L33: 4.4590 L12: 2.0748 REMARK 3 L13: -3.0387 L23: -1.5153 REMARK 3 S TENSOR REMARK 3 S11: -0.0308 S12: 0.1234 S13: -0.4627 REMARK 3 S21: 0.0380 S22: 0.0043 S23: -0.3344 REMARK 3 S31: 0.1770 S32: -0.3008 S33: -0.0154 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.9030 3.7490 0.3432 REMARK 3 T TENSOR REMARK 3 T11: 0.3980 T22: 0.4689 REMARK 3 T33: 0.3956 T12: 0.0882 REMARK 3 T13: 0.0104 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 4.8016 L22: 6.2986 REMARK 3 L33: 9.5444 L12: 2.8084 REMARK 3 L13: -5.4463 L23: -0.7653 REMARK 3 S TENSOR REMARK 3 S11: 0.2779 S12: 0.0848 S13: -0.3603 REMARK 3 S21: 0.3587 S22: 0.2893 S23: 0.2636 REMARK 3 S31: -0.1568 S32: -1.0682 S33: -0.2812 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 89 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7218 11.3925 -1.9956 REMARK 3 T TENSOR REMARK 3 T11: 0.4170 T22: 0.3372 REMARK 3 T33: 0.5074 T12: 0.0630 REMARK 3 T13: 0.0046 T23: -0.0314 REMARK 3 L TENSOR REMARK 3 L11: 8.1496 L22: 6.2480 REMARK 3 L33: 2.5034 L12: -0.5320 REMARK 3 L13: 0.3895 L23: 0.6218 REMARK 3 S TENSOR REMARK 3 S11: -0.1420 S12: 0.0010 S13: 1.2709 REMARK 3 S21: 0.5055 S22: 0.3089 S23: -0.0000 REMARK 3 S31: -0.4961 S32: -0.3726 S33: -0.2552 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.9262 -5.4917 16.0186 REMARK 3 T TENSOR REMARK 3 T11: 0.5306 T22: 0.4994 REMARK 3 T33: 0.5053 T12: 0.1022 REMARK 3 T13: 0.0294 T23: 0.0802 REMARK 3 L TENSOR REMARK 3 L11: 7.5638 L22: 7.2951 REMARK 3 L33: 3.6234 L12: 3.4056 REMARK 3 L13: -1.0510 L23: -4.8617 REMARK 3 S TENSOR REMARK 3 S11: 0.1645 S12: 0.8667 S13: 0.5625 REMARK 3 S21: -0.5518 S22: -0.1029 S23: -0.3927 REMARK 3 S31: 0.2334 S32: 0.2459 S33: -0.1712 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5937 -6.8324 32.9768 REMARK 3 T TENSOR REMARK 3 T11: 0.3489 T22: 0.3122 REMARK 3 T33: 0.3953 T12: 0.0486 REMARK 3 T13: -0.0196 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.3303 L22: 5.0831 REMARK 3 L33: 4.7098 L12: 1.8369 REMARK 3 L13: 1.3521 L23: 1.8379 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.1686 S13: 0.4047 REMARK 3 S21: 0.3390 S22: 0.0342 S23: 0.2464 REMARK 3 S31: 0.0934 S32: 0.0255 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 55 THROUGH 67 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2168 -9.7912 24.4008 REMARK 3 T TENSOR REMARK 3 T11: 0.3458 T22: 0.4508 REMARK 3 T33: 0.4774 T12: 0.0911 REMARK 3 T13: -0.0307 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 3.7114 L22: 6.2597 REMARK 3 L33: 8.2511 L12: 4.8035 REMARK 3 L13: -2.0696 L23: -3.2210 REMARK 3 S TENSOR REMARK 3 S11: -0.4355 S12: 0.2807 S13: 0.0001 REMARK 3 S21: -0.3733 S22: 0.5204 S23: -0.1718 REMARK 3 S31: 0.0001 S32: -0.6242 S33: -0.1501 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 68 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9124 -21.4445 19.8747 REMARK 3 T TENSOR REMARK 3 T11: 0.5592 T22: 0.4918 REMARK 3 T33: 0.3865 T12: 0.0017 REMARK 3 T13: -0.1195 T23: -0.1010 REMARK 3 L TENSOR REMARK 3 L11: 5.8605 L22: 3.9667 REMARK 3 L33: 7.7883 L12: 1.7436 REMARK 3 L13: -4.6609 L23: -0.7881 REMARK 3 S TENSOR REMARK 3 S11: 0.6403 S12: 2.0974 S13: -1.1245 REMARK 3 S21: -0.7408 S22: -0.0715 S23: 0.1923 REMARK 3 S31: 1.6686 S32: 0.0010 S33: -0.2568 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 88 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7012 -17.1535 25.6407 REMARK 3 T TENSOR REMARK 3 T11: 0.4989 T22: 0.2937 REMARK 3 T33: 0.4309 T12: 0.1043 REMARK 3 T13: -0.0641 T23: -0.0120 REMARK 3 L TENSOR REMARK 3 L11: 4.7032 L22: 6.7403 REMARK 3 L33: 8.4433 L12: -1.0094 REMARK 3 L13: -0.6015 L23: -3.6473 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: -0.2937 S13: -0.3637 REMARK 3 S21: 0.0492 S22: -0.0263 S23: -0.0348 REMARK 3 S31: 1.0201 S32: 0.1697 S33: -0.0369 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 89 THROUGH 103 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3525 -12.3151 26.1462 REMARK 3 T TENSOR REMARK 3 T11: 0.4050 T22: 0.4199 REMARK 3 T33: 0.3684 T12: -0.0153 REMARK 3 T13: -0.0879 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 7.3823 L22: 8.2290 REMARK 3 L33: 5.8317 L12: -2.2005 REMARK 3 L13: -3.2348 L23: -2.1972 REMARK 3 S TENSOR REMARK 3 S11: 0.2660 S12: 1.1414 S13: -0.1974 REMARK 3 S21: -0.4484 S22: -0.2457 S23: -0.1424 REMARK 3 S31: 0.5971 S32: -0.3965 S33: 0.2953 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 104 THROUGH 115 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.1420 -5.6682 30.3130 REMARK 3 T TENSOR REMARK 3 T11: 0.3819 T22: 0.4219 REMARK 3 T33: 0.5965 T12: 0.0038 REMARK 3 T13: -0.0324 T23: 0.0509 REMARK 3 L TENSOR REMARK 3 L11: 9.0092 L22: 9.1030 REMARK 3 L33: 2.6393 L12: 0.6509 REMARK 3 L13: -0.6721 L23: 4.7763 REMARK 3 S TENSOR REMARK 3 S11: -0.2669 S12: 0.3582 S13: 0.0721 REMARK 3 S21: 0.6119 S22: 0.0548 S23: -0.9328 REMARK 3 S31: 0.1359 S32: 1.2332 S33: 0.0879 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DNU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000234994. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10761 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.280 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.11500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.28 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.70 REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% W/V PEG 400, 1.7-2.2 M REMARK 280 CITRATE/CITRIC ACID PH 7.0 - 7.8, VAPOR DIFFUSION, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.36900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.18450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.55350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 SER B -2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 323 O HOH B 327 2.05 REMARK 500 O HOH A 316 O HOH A 324 2.10 REMARK 500 NZ LYS A 17 OD1 ASN B -1 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -54.37 -134.87 REMARK 500 HIS B 19 74.66 -150.04 REMARK 500 THR B 43 -55.76 -134.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 P6G A 201 REMARK 610 P6G A 202 REMARK 610 P6G A 203 REMARK 610 P6G B 201 REMARK 610 P6G B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue P6G B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide P6G B 203 and ARG B REMARK 800 94 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SASDCJ7 RELATED DB: SASBDB DBREF 6DNU A 1 115 UNP C6S7X6 C6S7X6_NEIML 499 613 DBREF 6DNU B 1 115 UNP C6S7X6 C6S7X6_NEIML 499 613 SEQADV 6DNU SER A -2 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNU ASN A -1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNU ALA A 0 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNU SER B -2 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNU ASN B -1 UNP C6S7X6 EXPRESSION TAG SEQADV 6DNU ALA B 0 UNP C6S7X6 EXPRESSION TAG SEQRES 1 A 118 SER ASN ALA MET PHE ALA ASP THR ALA ALA LEU LYS ALA SEQRES 2 A 118 ALA MET ASP THR ALA LEU LYS GLU HIS PRO ASP LYS PRO SEQRES 3 A 118 VAL VAL LEU ASP PHE TYR ALA ASP TRP CYS ILE SER CYS SEQRES 4 A 118 LYS GLU MET ALA ALA TYR THR LEU ASN GLN PRO GLU VAL SEQRES 5 A 118 HIS GLN ALA VAL ASP MET GLU ARG PHE PHE GLN ILE ASP SEQRES 6 A 118 VAL THR ALA ASN THR PRO GLU HIS GLN ALA LEU LEU LYS SEQRES 7 A 118 GLU TYR GLY LEU PHE GLY PRO PRO GLY VAL PHE VAL VAL SEQRES 8 A 118 ARG SER ASP GLY SER ARG SER GLU PRO LEU LEU GLY PHE SEQRES 9 A 118 VAL LYS ALA ASP LYS PHE ILE GLU TRP TYR GLU GLN ASN SEQRES 10 A 118 ARG SEQRES 1 B 118 SER ASN ALA MET PHE ALA ASP THR ALA ALA LEU LYS ALA SEQRES 2 B 118 ALA MET ASP THR ALA LEU LYS GLU HIS PRO ASP LYS PRO SEQRES 3 B 118 VAL VAL LEU ASP PHE TYR ALA ASP TRP CYS ILE SER CYS SEQRES 4 B 118 LYS GLU MET ALA ALA TYR THR LEU ASN GLN PRO GLU VAL SEQRES 5 B 118 HIS GLN ALA VAL ASP MET GLU ARG PHE PHE GLN ILE ASP SEQRES 6 B 118 VAL THR ALA ASN THR PRO GLU HIS GLN ALA LEU LEU LYS SEQRES 7 B 118 GLU TYR GLY LEU PHE GLY PRO PRO GLY VAL PHE VAL VAL SEQRES 8 B 118 ARG SER ASP GLY SER ARG SER GLU PRO LEU LEU GLY PHE SEQRES 9 B 118 VAL LYS ALA ASP LYS PHE ILE GLU TRP TYR GLU GLN ASN SEQRES 10 B 118 ARG HET P6G A 201 7 HET P6G A 202 10 HET P6G A 203 7 HET P6G B 201 7 HET P6G B 202 7 HET P6G B 203 7 HETNAM P6G HEXAETHYLENE GLYCOL HETSYN P6G POLYETHYLENE GLYCOL PEG400 FORMUL 3 P6G 6(C12 H26 O7) FORMUL 9 HOH *58(H2 O) HELIX 1 AA1 ASP A 4 HIS A 19 1 16 HELIX 2 AA2 CYS A 33 THR A 43 1 11 HELIX 3 AA3 GLN A 46 VAL A 53 1 8 HELIX 4 AA4 ASP A 54 GLU A 56 5 3 HELIX 5 AA5 THR A 67 TYR A 77 1 11 HELIX 6 AA6 LYS A 103 ASN A 114 1 12 HELIX 7 AA7 ASP B 4 HIS B 19 1 16 HELIX 8 AA8 CYS B 33 THR B 43 1 11 HELIX 9 AA9 GLN B 46 VAL B 53 1 8 HELIX 10 AB1 ASP B 54 GLU B 56 5 3 HELIX 11 AB2 THR B 67 TYR B 77 1 11 HELIX 12 AB3 LYS B 103 ARG B 115 1 13 SHEET 1 AA1 3 PHE A 58 ASP A 62 0 SHEET 2 AA1 3 VAL A 24 TYR A 29 1 N VAL A 25 O PHE A 59 SHEET 3 AA1 3 VAL A 85 VAL A 88 -1 O PHE A 86 N LEU A 26 SHEET 1 AA2 3 PHE B 58 ASP B 62 0 SHEET 2 AA2 3 VAL B 24 TYR B 29 1 N VAL B 25 O PHE B 59 SHEET 3 AA2 3 VAL B 85 VAL B 88 -1 O PHE B 86 N LEU B 26 SSBOND 1 CYS A 33 CYS A 36 1555 1555 2.05 SSBOND 2 CYS B 33 CYS B 36 1555 1555 2.04 LINK NH2 ARG B 94 O7 P6G B 203 1555 1555 1.30 CISPEP 1 PRO A 82 PRO A 83 0 5.25 CISPEP 2 PRO B 82 PRO B 83 0 0.52 SITE 1 AC1 1 ALA B 41 SITE 1 AC2 4 GLU A 56 LYS A 75 LYS B 17 SER B 90 SITE 1 AC3 3 HIS A 50 ALA A 52 HOH A 312 SITE 1 AC4 1 TYR A 42 SITE 1 AC5 3 TYR B 42 GLN B 46 HOH B 303 SITE 1 AC6 8 ASP B 13 GLU B 76 TYR B 77 VAL B 87 SITE 2 AC6 8 VAL B 88 GLY B 92 SER B 93 SER B 95 CRYST1 35.796 35.796 188.738 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027936 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027936 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005298 0.00000