data_6DPB # _entry.id 6DPB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6DPB pdb_00006dpb 10.2210/pdb6dpb/pdb WWPDB D_1000235003 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6DPB _pdbx_database_status.recvd_initial_deposition_date 2018-06-09 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Samara, N.L.' 1 ? 'Yang, W.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1545-9985 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 25 _citation.language ? _citation.page_first 715 _citation.page_last 721 _citation.title 'Cation trafficking propels RNA hydrolysis.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41594-018-0099-4 _citation.pdbx_database_id_PubMed 30076410 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Samara, N.L.' 1 ? primary 'Yang, W.' 2 0000-0002-3591-2195 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 96.850 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 6DPB _cell.details ? _cell.formula_units_Z ? _cell.length_a 81.546 _cell.length_a_esd ? _cell.length_b 37.318 _cell.length_b_esd ? _cell.length_c 62.154 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6DPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Ribonuclease H' 15716.729 1 3.1.26.4 ? ? ? 2 polymer syn ;RNA (5'-R(*AP*CP*AP*U)-3') portion of cleaved RNA ; 1224.802 1 ? ? ? ? 3 polymer syn ;RNA (5'-R(P*CP*G)-3') portion of cleaved RNA ; 605.430 1 ? ? ? ? 4 polymer syn ;DNA (5'-D(*CP*GP*AP*TP*GP*T)-3') ; 1824.228 1 ? ? ? ? 5 non-polymer syn 'MANGANESE (II) ION' 54.938 4 ? ? ? ? 6 non-polymer syn 'POTASSIUM ION' 39.098 3 ? ? ? ? 7 non-polymer syn 'IODIDE ION' 126.904 4 ? ? ? ? 8 non-polymer syn GLYCEROL 92.094 4 ? ? ? ? 9 non-polymer syn 1,2-ETHANEDIOL 62.068 3 ? ? ? ? 10 water nat water 18.015 212 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'RNase H' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; A ? 2 polyribonucleotide no no ACAU ACAU B ? 3 polyribonucleotide no no CG CG b ? 4 polydeoxyribonucleotide no no '(DC)(DG)(DA)(DT)(DG)(DT)' CGATGT C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 GLU n 1 3 ILE n 1 4 ILE n 1 5 TRP n 1 6 GLU n 1 7 SER n 1 8 LEU n 1 9 SER n 1 10 VAL n 1 11 ASP n 1 12 VAL n 1 13 GLY n 1 14 SER n 1 15 GLN n 1 16 GLY n 1 17 ASN n 1 18 PRO n 1 19 GLY n 1 20 ILE n 1 21 VAL n 1 22 GLU n 1 23 TYR n 1 24 LYS n 1 25 GLY n 1 26 VAL n 1 27 ASP n 1 28 THR n 1 29 LYS n 1 30 THR n 1 31 GLY n 1 32 GLU n 1 33 VAL n 1 34 LEU n 1 35 PHE n 1 36 GLU n 1 37 ARG n 1 38 GLU n 1 39 PRO n 1 40 ILE n 1 41 PRO n 1 42 ILE n 1 43 GLY n 1 44 THR n 1 45 ASN n 1 46 ASN n 1 47 MET n 1 48 GLY n 1 49 GLU n 1 50 PHE n 1 51 LEU n 1 52 ALA n 1 53 ILE n 1 54 VAL n 1 55 HIS n 1 56 GLY n 1 57 LEU n 1 58 ARG n 1 59 TYR n 1 60 LEU n 1 61 LYS n 1 62 GLU n 1 63 ARG n 1 64 ASN n 1 65 SER n 1 66 ARG n 1 67 LYS n 1 68 PRO n 1 69 ILE n 1 70 TYR n 1 71 SER n 1 72 ASP n 1 73 SER n 1 74 GLN n 1 75 THR n 1 76 ALA n 1 77 ILE n 1 78 LYS n 1 79 TRP n 1 80 VAL n 1 81 LYS n 1 82 ASP n 1 83 LYS n 1 84 LYS n 1 85 ALA n 1 86 LYS n 1 87 SER n 1 88 THR n 1 89 LEU n 1 90 VAL n 1 91 ARG n 1 92 ASN n 1 93 GLU n 1 94 GLU n 1 95 THR n 1 96 ALA n 1 97 LEU n 1 98 ILE n 1 99 TRP n 1 100 LYS n 1 101 LEU n 1 102 VAL n 1 103 ASP n 1 104 GLU n 1 105 ALA n 1 106 GLU n 1 107 GLU n 1 108 TRP n 1 109 LEU n 1 110 ASN n 1 111 THR n 1 112 HIS n 1 113 THR n 1 114 TYR n 1 115 GLU n 1 116 THR n 1 117 PRO n 1 118 ILE n 1 119 LEU n 1 120 LYS n 1 121 TRP n 1 122 GLN n 1 123 THR n 1 124 ASP n 1 125 LYS n 1 126 TRP n 1 127 GLY n 1 128 GLU n 1 129 ILE n 1 130 LYS n 1 131 ALA n 1 132 ASP n 1 133 TYR n 1 134 GLY n 1 135 ARG n 1 136 LYS n 2 1 A n 2 2 C n 2 3 A n 2 4 U n 3 1 C n 3 2 G n 4 1 DC n 4 2 DG n 4 3 DA n 4 4 DT n 4 5 DG n 4 6 DT n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 136 _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'rnhA, BH0863' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 272558 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET15b _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample 1 4 synthetic ? 32630 ? 3 1 sample 1 2 synthetic ? 32630 ? 4 1 sample 1 6 synthetic ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP RNH1_BACHD Q9KEI9 ? 1 ;EEIIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNSRKPIYSDSQTAIKWV KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKADYGRK ; 61 2 PDB 6DPB 6DPB ? 2 ? 1 3 PDB 6DPB 6DPB ? 3 ? 1 4 PDB 6DPB 6DPB ? 4 ? 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6DPB A 1 ? 136 ? Q9KEI9 61 ? 196 ? 61 196 2 2 6DPB B 1 ? 4 ? 6DPB 1 ? 4 ? 1 4 3 3 6DPB b 1 ? 2 ? 6DPB 5 ? 6 ? 5 6 4 4 6DPB C 1 ? 6 ? 6DPB 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IOD non-polymer . 'IODIDE ION' ? 'I -1' 126.904 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6DPB _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.42 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 49.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity 0.000 _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '14% PEG3350, 20% glycerol, 200 mM KI, and 25 mM CaCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'MARMOSAIC 225 mm CCD' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-12-16 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-BM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-BM _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 18.360 _reflns.entry_id 6DPB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.320 _reflns.d_resolution_low 33.890 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 41029 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 94.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 1.000 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 8.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 41029 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.320 _reflns_shell.d_res_low 1.350 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1746 _reflns_shell.percent_possible_all 79.400 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 1.000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 112.200 _refine.B_iso_mean 27.6723 _refine.B_iso_min 11.360 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details 'Structures refined in Phenix and nucleic acid and protein residues built in Coot' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6DPB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.3240 _refine.ls_d_res_low 33.89 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 41027 _refine.ls_number_reflns_R_free 2006 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 94.4200 _refine.ls_percent_reflns_R_free 4.8900 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1495 _refine.ls_R_factor_R_free 0.1715 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1483 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.360 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 1ZBL _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 19.2000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1500 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.3240 _refine_hist.d_res_low 33.89 _refine_hist.pdbx_number_atoms_ligand 47 _refine_hist.number_atoms_solvent 212 _refine_hist.number_atoms_total 1613 _refine_hist.pdbx_number_residues_total 148 _refine_hist.pdbx_B_iso_mean_ligand 55.75 _refine_hist.pdbx_B_iso_mean_solvent 40.26 _refine_hist.pdbx_number_atoms_protein 1110 _refine_hist.pdbx_number_atoms_nucleic_acid 244 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 1491 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.059 ? 2052 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.070 ? 226 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.007 ? 212 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 21.937 ? 591 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.3245 1.3576 2572 . 121 2451 83.0000 . . . 0.2879 0.0000 0.3213 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.3576 1.3943 2855 . 144 2711 93.0000 . . . 0.3208 0.0000 0.2877 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.3943 1.4353 2861 . 138 2723 93.0000 . . . 0.2649 0.0000 0.2564 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.4353 1.4816 2865 . 149 2716 93.0000 . . . 0.2278 0.0000 0.2218 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.4816 1.5346 2861 . 142 2719 94.0000 . . . 0.2118 0.0000 0.1959 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.5346 1.5960 2920 . 128 2792 94.0000 . . . 0.1958 0.0000 0.1720 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.5960 1.6687 2943 . 154 2789 95.0000 . . . 0.1894 0.0000 0.1625 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.6687 1.7567 2926 . 124 2802 95.0000 . . . 0.1637 0.0000 0.1543 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.7567 1.8667 2998 . 126 2872 96.0000 . . . 0.1787 0.0000 0.1592 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 1.8667 2.0108 2955 . 143 2812 96.0000 . . . 0.1969 0.0000 0.1527 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.0108 2.2131 3005 . 151 2854 97.0000 . . . 0.1668 0.0000 0.1475 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.2131 2.5333 3027 . 160 2867 97.0000 . . . 0.1679 0.0000 0.1438 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 2.5333 3.1913 3077 . 163 2914 98.0000 . . . 0.1775 0.0000 0.1426 . . . . . . 14 . . . 'X-RAY DIFFRACTION' 3.1913 33.9023 3162 . 163 2999 98.0000 . . . 0.1408 0.0000 0.1207 . . . . . . 14 . . . # _struct.entry_id 6DPB _struct.title ;Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 8 mM Mn2+ and 200 mM K+ for 40 s at 21 C ; _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6DPB _struct_keywords.text ;protein-RNA-DNA complex, double helix, RNA hydrolysis, in crystallo catalysis, metal dependent catalysis, monovalent cations, divalent cations, HYDROLASE-DNA-RNA complex ; _struct_keywords.pdbx_keywords HYDROLASE/DNA/RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? H N N 6 ? I N N 7 ? J N N 7 ? K N N 7 ? L N N 7 ? M N N 8 ? N N N 8 ? O N N 8 ? P N N 9 ? Q N N 9 ? R N N 8 ? S N N 9 ? T N N 6 ? U N N 5 ? V N N 6 ? W N N 10 ? X N N 10 ? Y N N 10 ? Z N N 10 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 THR A 44 ? ARG A 63 ? THR A 104 ARG A 123 1 ? 20 HELX_P HELX_P2 AA2 SER A 73 ? LYS A 83 ? SER A 133 LYS A 143 1 ? 11 HELX_P HELX_P3 AA3 ASN A 92 ? GLU A 94 ? ASN A 152 GLU A 154 5 ? 3 HELX_P HELX_P4 AA4 THR A 95 ? ASN A 110 ? THR A 155 ASN A 170 1 ? 16 HELX_P HELX_P5 AA5 GLN A 122 ? GLY A 127 ? GLN A 182 GLY A 187 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B U 4 "O3'" C ? ? 1_555 C C 1 P C ? B U 4 b C 5 1_555 ? ? ? ? ? ? ? 1.587 sing ? metalc1 metalc ? ? A ASP 11 OD2 ? ? ? 1_555 E MN . MN ? ? A ASP 71 A MN 201 1_555 ? ? ? ? ? ? ? 2.106 ? ? metalc2 metalc ? ? A ASP 11 OD1 ? ? ? 1_555 F MN . MN ? ? A ASP 71 A MN 202 1_555 ? ? ? ? ? ? ? 2.061 ? ? metalc3 metalc ? ? A GLU 49 OE1 ? ? ? 1_555 F MN . MN ? ? A GLU 109 A MN 202 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc4 metalc ? ? A ASP 72 OD1 ? ? ? 1_555 F MN . MN ? ? A ASP 132 A MN 202 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc5 metalc ? ? A ASP 72 OD2 ? ? ? 1_555 F MN . MN ? ? A ASP 132 A MN 202 1_555 ? ? ? ? ? ? ? 2.530 ? ? metalc6 metalc ? ? A ASP 103 OD1 ? ? ? 1_555 G MN . MN ? ? A ASP 163 A MN 203 1_555 ? ? ? ? ? ? ? 2.606 ? ? metalc7 metalc ? ? A GLU 106 OE1 ? ? ? 1_555 G MN . MN ? ? A GLU 166 A MN 203 1_555 ? ? ? ? ? ? ? 2.116 ? ? metalc8 metalc ? ? A GLU 128 OE2 ? ? ? 1_555 T K . K B ? A GLU 188 A K 216 1_555 ? ? ? ? ? ? ? 3.449 ? ? metalc9 metalc ? ? A ASP 132 OD1 ? ? ? 1_555 E MN . MN ? ? A ASP 192 A MN 201 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc10 metalc ? ? A ASP 132 OD1 ? ? ? 1_555 H K . K C ? A ASP 192 A K 204 1_555 ? ? ? ? ? ? ? 2.914 ? ? metalc11 metalc ? ? E MN . MN ? ? ? 1_555 W HOH . O ? ? A MN 201 A HOH 327 1_555 ? ? ? ? ? ? ? 2.181 ? ? metalc12 metalc ? ? E MN . MN ? ? ? 1_555 W HOH . O ? ? A MN 201 A HOH 351 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc13 metalc ? ? E MN . MN ? ? ? 1_555 C C 1 OP3 B ? A MN 201 b C 5 1_555 ? ? ? ? ? ? ? 2.150 ? ? metalc14 metalc ? ? E MN . MN ? ? ? 1_555 C C 1 OP1 B ? A MN 201 b C 5 1_555 ? ? ? ? ? ? ? 2.383 ? ? metalc15 metalc ? ? E MN . MN ? ? ? 1_555 C C 1 OP1 C ? A MN 201 b C 5 1_555 ? ? ? ? ? ? ? 2.305 ? ? metalc16 metalc ? ? E MN . MN ? ? ? 1_555 Y HOH . O C ? A MN 201 b HOH 201 1_555 ? ? ? ? ? ? ? 2.133 ? ? metalc17 metalc ? ? F MN . MN ? ? ? 1_555 B U 4 "O3'" C ? A MN 202 B U 4 1_555 ? ? ? ? ? ? ? 2.654 ? ? metalc18 metalc ? ? F MN . MN ? ? ? 1_555 C C 1 OP1 B ? A MN 202 b C 5 1_555 ? ? ? ? ? ? ? 2.387 ? ? metalc19 metalc ? ? F MN . MN ? ? ? 1_555 C C 1 OP1 C ? A MN 202 b C 5 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc20 metalc ? ? G MN . MN ? ? ? 1_555 W HOH . O ? ? A MN 203 A HOH 302 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc21 metalc ? ? G MN . MN ? ? ? 1_555 W HOH . O ? ? A MN 203 A HOH 342 4_556 ? ? ? ? ? ? ? 2.123 ? ? metalc22 metalc ? ? G MN . MN ? ? ? 1_555 W HOH . O ? ? A MN 203 A HOH 426 1_555 ? ? ? ? ? ? ? 2.296 ? ? metalc23 metalc ? ? H K . K C ? ? 1_555 W HOH . O ? ? A K 204 A HOH 370 1_555 ? ? ? ? ? ? ? 2.799 ? ? metalc24 metalc ? ? H K . K C ? ? 1_555 C G 2 OP2 ? ? A K 204 b G 6 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc25 metalc ? ? H K . K C ? ? 1_555 Y HOH . O C ? A K 204 b HOH 201 1_555 ? ? ? ? ? ? ? 3.008 ? ? metalc26 metalc ? ? T K . K B ? ? 1_555 W HOH . O ? ? A K 216 A HOH 358 1_555 ? ? ? ? ? ? ? 3.231 ? ? metalc27 metalc ? ? T K . K B ? ? 1_555 X HOH . O ? ? A K 216 B HOH 109 1_555 ? ? ? ? ? ? ? 2.668 ? ? metalc28 metalc ? ? T K . K B ? ? 1_555 C C 1 OP2 B ? A K 216 b C 5 1_555 ? ? ? ? ? ? ? 2.657 ? ? metalc29 metalc ? ? C G 2 O6 ? ? ? 1_555 U MN . MN ? ? b G 6 b MN 101 1_555 ? ? ? ? ? ? ? 2.679 ? ? metalc30 metalc ? ? U MN . MN ? ? ? 1_555 Y HOH . O ? ? b MN 101 b HOH 202 1_555 ? ? ? ? ? ? ? 2.367 ? ? metalc31 metalc ? ? U MN . MN ? ? ? 1_555 Z HOH . O ? ? b MN 101 C HOH 207 4_545 ? ? ? ? ? ? ? 1.991 ? ? metalc32 metalc ? ? D DT 4 O4 ? ? ? 1_555 V K . K A ? C DT 4 C K 101 1_555 ? ? ? ? ? ? ? 3.109 ? ? metalc33 metalc ? ? D DG 5 O6 ? ? ? 1_555 V K . K A ? C DG 5 C K 101 1_555 ? ? ? ? ? ? ? 2.648 ? ? metalc34 metalc ? ? V K . K A ? ? 1_555 Z HOH . O ? ? C K 101 C HOH 210 1_555 ? ? ? ? ? ? ? 3.059 ? ? hydrog1 hydrog ? ? B A 1 N1 ? ? ? 1_555 D DT 6 N3 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B A 1 N6 ? ? ? 1_555 D DT 6 O4 ? ? B A 1 C DT 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B C 2 N3 ? ? ? 1_555 D DG 5 N1 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B C 2 N4 ? ? ? 1_555 D DG 5 O6 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B C 2 O2 ? ? ? 1_555 D DG 5 N2 ? ? B C 2 C DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B A 3 N1 ? ? ? 1_555 D DT 4 N3 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B A 3 N6 ? ? ? 1_555 D DT 4 O4 ? ? B A 3 C DT 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B U 4 N3 ? ? ? 1_555 D DA 3 N1 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B U 4 O4 ? ? ? 1_555 D DA 3 N6 ? ? B U 4 C DA 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? C C 1 N3 ? ? ? 1_555 D DG 2 N1 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? C C 1 N4 ? ? ? 1_555 D DG 2 O6 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? C C 1 O2 ? ? ? 1_555 D DG 2 N2 ? ? b C 5 C DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? C G 2 N1 ? ? ? 1_555 D DC 1 N3 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? C G 2 N2 ? ? ? 1_555 D DC 1 O2 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? C G 2 O6 ? ? ? 1_555 D DC 1 N4 ? ? b G 6 C DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 17 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 77 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 18 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 78 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.05 # _struct_sheet.id AA1 _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA1 3 4 ? parallel AA1 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 VAL A 33 ? GLY A 43 ? VAL A 93 GLY A 103 AA1 2 GLY A 19 ? ASP A 27 ? GLY A 79 ASP A 87 AA1 3 LEU A 8 ? GLN A 15 ? LEU A 68 GLN A 75 AA1 4 ILE A 69 ? SER A 71 ? ILE A 129 SER A 131 AA1 5 ILE A 118 ? LYS A 120 ? ILE A 178 LYS A 180 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 O ILE A 40 ? O ILE A 100 N VAL A 21 ? N VAL A 81 AA1 2 3 O VAL A 26 ? O VAL A 86 N SER A 9 ? N SER A 69 AA1 3 4 N LEU A 8 ? N LEU A 68 O TYR A 70 ? O TYR A 130 AA1 4 5 N ILE A 69 ? N ILE A 129 O LEU A 119 ? O LEU A 179 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MN 201 ? 6 'binding site for residue MN A 201' AC2 Software A MN 202 ? 5 'binding site for residue MN A 202' AC3 Software A MN 203 ? 7 'binding site for residue MN A 203' AC4 Software A K 204 ? 8 'binding site for residue K A 204' AC5 Software A IOD 205 ? 1 'binding site for residue IOD A 205' AC6 Software A IOD 207 ? 2 'binding site for residue IOD A 207' AC7 Software A GOL 209 ? 6 'binding site for residue GOL A 209' AC8 Software A GOL 210 ? 8 'binding site for residue GOL A 210' AC9 Software A GOL 211 ? 6 'binding site for residue GOL A 211' AD1 Software A EDO 212 ? 3 'binding site for residue EDO A 212' AD2 Software A EDO 213 ? 4 'binding site for residue EDO A 213' AD3 Software A GOL 214 ? 5 'binding site for residue GOL A 214' AD4 Software A EDO 215 ? 4 'binding site for residue EDO A 215' AD5 Software A K 216 ? 6 'binding site for residue K A 216' AD6 Software b MN 101 ? 4 'binding site for residue MN b 101' AD7 Software C K 101 ? 4 'binding site for residue K C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 11 ? ASP A 71 . ? 1_555 ? 2 AC1 6 ASP A 132 ? ASP A 192 . ? 1_555 ? 3 AC1 6 HOH W . ? HOH A 327 . ? 1_555 ? 4 AC1 6 HOH W . ? HOH A 351 . ? 1_555 ? 5 AC1 6 C C 1 ? C b 5 . ? 1_555 ? 6 AC1 6 HOH Y . ? HOH b 201 . ? 1_555 ? 7 AC2 5 ASP A 11 ? ASP A 71 . ? 1_555 ? 8 AC2 5 GLU A 49 ? GLU A 109 . ? 1_555 ? 9 AC2 5 ASP A 72 ? ASP A 132 . ? 1_555 ? 10 AC2 5 U B 4 ? U B 4 . ? 1_555 ? 11 AC2 5 C C 1 ? C b 5 . ? 1_555 ? 12 AC3 7 LYS A 84 ? LYS A 144 . ? 1_555 ? 13 AC3 7 ASP A 103 ? ASP A 163 . ? 1_555 ? 14 AC3 7 GLU A 106 ? GLU A 166 . ? 1_555 ? 15 AC3 7 HOH W . ? HOH A 302 . ? 1_555 ? 16 AC3 7 HOH W . ? HOH A 323 . ? 1_555 ? 17 AC3 7 HOH W . ? HOH A 342 . ? 4_556 ? 18 AC3 7 HOH W . ? HOH A 426 . ? 1_555 ? 19 AC4 8 ASP A 132 ? ASP A 192 . ? 1_555 ? 20 AC4 8 ARG A 135 ? ARG A 195 . ? 1_555 ? 21 AC4 8 LYS A 136 ? LYS A 196 . ? 1_555 ? 22 AC4 8 HOH W . ? HOH A 366 . ? 1_555 ? 23 AC4 8 HOH W . ? HOH A 370 . ? 1_555 ? 24 AC4 8 C C 1 ? C b 5 . ? 1_555 ? 25 AC4 8 G C 2 ? G b 6 . ? 1_555 ? 26 AC4 8 HOH Y . ? HOH b 201 . ? 1_555 ? 27 AC5 1 TYR A 23 ? TYR A 83 . ? 1_555 ? 28 AC6 2 HOH W . ? HOH A 474 . ? 1_555 ? 29 AC6 2 HOH W . ? HOH A 476 . ? 1_555 ? 30 AC7 6 GLY A 16 ? GLY A 76 . ? 1_555 ? 31 AC7 6 ASN A 17 ? ASN A 77 . ? 1_555 ? 32 AC7 6 PRO A 18 ? PRO A 78 . ? 1_555 ? 33 AC7 6 DG D 2 ? DG C 2 . ? 1_555 ? 34 AC7 6 DA D 3 ? DA C 3 . ? 1_555 ? 35 AC7 6 HOH Y . ? HOH b 204 . ? 1_555 ? 36 AC8 8 HIS A 55 ? HIS A 115 . ? 1_555 ? 37 AC8 8 ARG A 58 ? ARG A 118 . ? 1_555 ? 38 AC8 8 TYR A 59 ? TYR A 119 . ? 1_555 ? 39 AC8 8 ARG A 63 ? ARG A 123 . ? 1_555 ? 40 AC8 8 GLU A 107 ? GLU A 167 . ? 4_546 ? 41 AC8 8 ASN A 110 ? ASN A 170 . ? 4_546 ? 42 AC8 8 GOL O . ? GOL A 211 . ? 1_555 ? 43 AC8 8 HOH W . ? HOH A 311 . ? 1_555 ? 44 AC9 6 HIS A 55 ? HIS A 115 . ? 1_555 ? 45 AC9 6 ARG A 58 ? ARG A 118 . ? 1_555 ? 46 AC9 6 ASN A 110 ? ASN A 170 . ? 4_546 ? 47 AC9 6 GOL N . ? GOL A 210 . ? 1_555 ? 48 AC9 6 HOH W . ? HOH A 305 . ? 1_555 ? 49 AC9 6 HOH W . ? HOH A 398 . ? 1_555 ? 50 AD1 3 LYS A 83 ? LYS A 143 . ? 1_555 ? 51 AD1 3 THR A 113 ? THR A 173 . ? 1_555 ? 52 AD1 3 TYR A 114 ? TYR A 174 . ? 1_555 ? 53 AD2 4 LYS A 29 ? LYS A 89 . ? 1_555 ? 54 AD2 4 GLU A 93 ? GLU A 153 . ? 3_545 ? 55 AD2 4 ALA A 96 ? ALA A 156 . ? 3_545 ? 56 AD2 4 HOH W . ? HOH A 354 . ? 1_555 ? 57 AD3 5 GLU A 6 ? GLU A 66 . ? 2_656 ? 58 AD3 5 ARG A 63 ? ARG A 123 . ? 1_555 ? 59 AD3 5 SER A 65 ? SER A 125 . ? 1_555 ? 60 AD3 5 LYS A 67 ? LYS A 127 . ? 1_555 ? 61 AD3 5 HOH W . ? HOH A 329 . ? 1_555 ? 62 AD4 4 THR A 88 ? THR A 148 . ? 1_555 ? 63 AD4 4 HOH W . ? HOH A 320 . ? 1_555 ? 64 AD4 4 DT D 4 ? DT C 4 . ? 1_555 ? 65 AD4 4 DG D 5 ? DG C 5 . ? 1_555 ? 66 AD5 6 ASP A 72 ? ASP A 132 . ? 1_555 ? 67 AD5 6 GLU A 128 ? GLU A 188 . ? 1_555 ? 68 AD5 6 HOH W . ? HOH A 310 . ? 1_555 ? 69 AD5 6 U B 4 ? U B 4 . ? 1_555 ? 70 AD5 6 HOH X . ? HOH B 109 . ? 1_555 ? 71 AD5 6 C C 1 ? C b 5 . ? 1_555 ? 72 AD6 4 HOH Z . ? HOH C 207 . ? 4_545 ? 73 AD6 4 G C 2 ? G b 6 . ? 1_555 ? 74 AD6 4 HOH Y . ? HOH b 202 . ? 1_555 ? 75 AD6 4 HOH Y . ? HOH b 205 . ? 1_555 ? 76 AD7 4 DT D 4 ? DT C 4 . ? 1_555 ? 77 AD7 4 DG D 5 ? DG C 5 . ? 1_555 ? 78 AD7 4 HOH Z . ? HOH C 205 . ? 1_555 ? 79 AD7 4 HOH Z . ? HOH C 210 . ? 1_555 ? # _atom_sites.entry_id 6DPB _atom_sites.fract_transf_matrix[1][1] 0.012263 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001473 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026797 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016205 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H I K MN N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 61 61 GLU GLU A . n A 1 2 GLU 2 62 62 GLU GLU A . n A 1 3 ILE 3 63 63 ILE ILE A . n A 1 4 ILE 4 64 64 ILE ILE A . n A 1 5 TRP 5 65 65 TRP TRP A . n A 1 6 GLU 6 66 66 GLU GLU A . n A 1 7 SER 7 67 67 SER SER A . n A 1 8 LEU 8 68 68 LEU LEU A . n A 1 9 SER 9 69 69 SER SER A . n A 1 10 VAL 10 70 70 VAL VAL A . n A 1 11 ASP 11 71 71 ASP ASP A . n A 1 12 VAL 12 72 72 VAL VAL A . n A 1 13 GLY 13 73 73 GLY GLY A . n A 1 14 SER 14 74 74 SER SER A . n A 1 15 GLN 15 75 75 GLN GLN A . n A 1 16 GLY 16 76 76 GLY GLY A . n A 1 17 ASN 17 77 77 ASN ASN A . n A 1 18 PRO 18 78 78 PRO PRO A . n A 1 19 GLY 19 79 79 GLY GLY A . n A 1 20 ILE 20 80 80 ILE ILE A . n A 1 21 VAL 21 81 81 VAL VAL A . n A 1 22 GLU 22 82 82 GLU GLU A . n A 1 23 TYR 23 83 83 TYR TYR A . n A 1 24 LYS 24 84 84 LYS LYS A . n A 1 25 GLY 25 85 85 GLY GLY A . n A 1 26 VAL 26 86 86 VAL VAL A . n A 1 27 ASP 27 87 87 ASP ASP A . n A 1 28 THR 28 88 88 THR THR A . n A 1 29 LYS 29 89 89 LYS LYS A . n A 1 30 THR 30 90 90 THR THR A . n A 1 31 GLY 31 91 91 GLY GLY A . n A 1 32 GLU 32 92 92 GLU GLU A . n A 1 33 VAL 33 93 93 VAL VAL A . n A 1 34 LEU 34 94 94 LEU LEU A . n A 1 35 PHE 35 95 95 PHE PHE A . n A 1 36 GLU 36 96 96 GLU GLU A . n A 1 37 ARG 37 97 97 ARG ARG A . n A 1 38 GLU 38 98 98 GLU GLU A . n A 1 39 PRO 39 99 99 PRO PRO A . n A 1 40 ILE 40 100 100 ILE ILE A . n A 1 41 PRO 41 101 101 PRO PRO A . n A 1 42 ILE 42 102 102 ILE ILE A . n A 1 43 GLY 43 103 103 GLY GLY A . n A 1 44 THR 44 104 104 THR THR A . n A 1 45 ASN 45 105 105 ASN ASN A . n A 1 46 ASN 46 106 106 ASN ASN A . n A 1 47 MET 47 107 107 MET MET A . n A 1 48 GLY 48 108 108 GLY GLY A . n A 1 49 GLU 49 109 109 GLU GLU A . n A 1 50 PHE 50 110 110 PHE PHE A . n A 1 51 LEU 51 111 111 LEU LEU A . n A 1 52 ALA 52 112 112 ALA ALA A . n A 1 53 ILE 53 113 113 ILE ILE A . n A 1 54 VAL 54 114 114 VAL VAL A . n A 1 55 HIS 55 115 115 HIS HIS A . n A 1 56 GLY 56 116 116 GLY GLY A . n A 1 57 LEU 57 117 117 LEU LEU A . n A 1 58 ARG 58 118 118 ARG ARG A . n A 1 59 TYR 59 119 119 TYR TYR A . n A 1 60 LEU 60 120 120 LEU LEU A . n A 1 61 LYS 61 121 121 LYS LYS A . n A 1 62 GLU 62 122 122 GLU GLU A . n A 1 63 ARG 63 123 123 ARG ARG A . n A 1 64 ASN 64 124 124 ASN ASN A . n A 1 65 SER 65 125 125 SER SER A . n A 1 66 ARG 66 126 126 ARG ARG A . n A 1 67 LYS 67 127 127 LYS LYS A . n A 1 68 PRO 68 128 128 PRO PRO A . n A 1 69 ILE 69 129 129 ILE ILE A . n A 1 70 TYR 70 130 130 TYR TYR A . n A 1 71 SER 71 131 131 SER SER A . n A 1 72 ASP 72 132 132 ASP ASP A . n A 1 73 SER 73 133 133 SER SER A . n A 1 74 GLN 74 134 134 GLN GLN A . n A 1 75 THR 75 135 135 THR THR A . n A 1 76 ALA 76 136 136 ALA ALA A . n A 1 77 ILE 77 137 137 ILE ILE A . n A 1 78 LYS 78 138 138 LYS LYS A . n A 1 79 TRP 79 139 139 TRP TRP A . n A 1 80 VAL 80 140 140 VAL VAL A . n A 1 81 LYS 81 141 141 LYS LYS A . n A 1 82 ASP 82 142 142 ASP ASP A . n A 1 83 LYS 83 143 143 LYS LYS A . n A 1 84 LYS 84 144 144 LYS LYS A . n A 1 85 ALA 85 145 145 ALA ALA A . n A 1 86 LYS 86 146 146 LYS LYS A . n A 1 87 SER 87 147 147 SER SER A . n A 1 88 THR 88 148 148 THR THR A . n A 1 89 LEU 89 149 149 LEU LEU A . n A 1 90 VAL 90 150 150 VAL VAL A . n A 1 91 ARG 91 151 151 ARG ARG A . n A 1 92 ASN 92 152 152 ASN ASN A . n A 1 93 GLU 93 153 153 GLU GLU A . n A 1 94 GLU 94 154 154 GLU GLU A . n A 1 95 THR 95 155 155 THR THR A . n A 1 96 ALA 96 156 156 ALA ALA A . n A 1 97 LEU 97 157 157 LEU LEU A . n A 1 98 ILE 98 158 158 ILE ILE A . n A 1 99 TRP 99 159 159 TRP TRP A . n A 1 100 LYS 100 160 160 LYS LYS A . n A 1 101 LEU 101 161 161 LEU LEU A . n A 1 102 VAL 102 162 162 VAL VAL A . n A 1 103 ASP 103 163 163 ASP ASP A . n A 1 104 GLU 104 164 164 GLU GLU A . n A 1 105 ALA 105 165 165 ALA ALA A . n A 1 106 GLU 106 166 166 GLU GLU A . n A 1 107 GLU 107 167 167 GLU GLU A . n A 1 108 TRP 108 168 168 TRP TRP A . n A 1 109 LEU 109 169 169 LEU LEU A . n A 1 110 ASN 110 170 170 ASN ASN A . n A 1 111 THR 111 171 171 THR THR A . n A 1 112 HIS 112 172 172 HIS HIS A . n A 1 113 THR 113 173 173 THR THR A . n A 1 114 TYR 114 174 174 TYR TYR A . n A 1 115 GLU 115 175 175 GLU GLU A . n A 1 116 THR 116 176 176 THR THR A . n A 1 117 PRO 117 177 177 PRO PRO A . n A 1 118 ILE 118 178 178 ILE ILE A . n A 1 119 LEU 119 179 179 LEU LEU A . n A 1 120 LYS 120 180 180 LYS LYS A . n A 1 121 TRP 121 181 181 TRP TRP A . n A 1 122 GLN 122 182 182 GLN GLN A . n A 1 123 THR 123 183 183 THR THR A . n A 1 124 ASP 124 184 184 ASP ASP A . n A 1 125 LYS 125 185 185 LYS LYS A . n A 1 126 TRP 126 186 186 TRP TRP A . n A 1 127 GLY 127 187 187 GLY GLY A . n A 1 128 GLU 128 188 188 GLU GLU A . n A 1 129 ILE 129 189 189 ILE ILE A . n A 1 130 LYS 130 190 190 LYS LYS A . n A 1 131 ALA 131 191 191 ALA ALA A . n A 1 132 ASP 132 192 192 ASP ASP A . n A 1 133 TYR 133 193 193 TYR TYR A . n A 1 134 GLY 134 194 194 GLY GLY A . n A 1 135 ARG 135 195 195 ARG ARG A . n A 1 136 LYS 136 196 196 LYS LYS A . n B 2 1 A 1 1 1 A A B . n B 2 2 C 2 2 2 C C B . n B 2 3 A 3 3 3 A A B . n B 2 4 U 4 4 4 U U B . n C 3 1 C 1 5 5 C C b . n C 3 2 G 2 6 6 G G b . n D 4 1 DC 1 1 1 DC DC C . n D 4 2 DG 2 2 2 DG DG C . n D 4 3 DA 3 3 3 DA DA C . n D 4 4 DT 4 4 4 DT DT C . n D 4 5 DG 5 5 5 DG DG C . n D 4 6 DT 6 6 6 DT DT C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 MN 1 201 201 MN MN A . F 5 MN 1 202 202 MN MN A . G 5 MN 1 203 204 MN MN A . H 6 K 1 204 211 K K A . I 7 IOD 1 205 1 IOD IOD A . J 7 IOD 1 206 2 IOD IOD A . K 7 IOD 1 207 3 IOD IOD A . L 7 IOD 1 208 4 IOD IOD A . M 8 GOL 1 209 1 GOL GOL A . N 8 GOL 1 210 2 GOL GOL A . O 8 GOL 1 211 4 GOL GOL A . P 9 EDO 1 212 5 EDO EDO A . Q 9 EDO 1 213 6 EDO EDO A . R 8 GOL 1 214 3 GOL GOL A . S 9 EDO 1 215 7 EDO EDO A . T 6 K 1 216 212 K K A . U 5 MN 1 101 205 MN MN b . V 6 K 1 101 213 K K C . W 10 HOH 1 301 193 HOH HOH A . W 10 HOH 2 302 272 HOH HOH A . W 10 HOH 3 303 16 HOH HOH A . W 10 HOH 4 304 105 HOH HOH A . W 10 HOH 5 305 190 HOH HOH A . W 10 HOH 6 306 52 HOH HOH A . W 10 HOH 7 307 223 HOH HOH A . W 10 HOH 8 308 60 HOH HOH A . W 10 HOH 9 309 282 HOH HOH A . W 10 HOH 10 310 233 HOH HOH A . W 10 HOH 11 311 49 HOH HOH A . W 10 HOH 12 312 165 HOH HOH A . W 10 HOH 13 313 62 HOH HOH A . W 10 HOH 14 314 200 HOH HOH A . W 10 HOH 15 315 213 HOH HOH A . W 10 HOH 16 316 153 HOH HOH A . W 10 HOH 17 317 191 HOH HOH A . W 10 HOH 18 318 276 HOH HOH A . W 10 HOH 19 319 46 HOH HOH A . W 10 HOH 20 320 166 HOH HOH A . W 10 HOH 21 321 286 HOH HOH A . W 10 HOH 22 322 277 HOH HOH A . W 10 HOH 23 323 215 HOH HOH A . W 10 HOH 24 324 53 HOH HOH A . W 10 HOH 25 325 267 HOH HOH A . W 10 HOH 26 326 202 HOH HOH A . W 10 HOH 27 327 232 HOH HOH A . W 10 HOH 28 328 21 HOH HOH A . W 10 HOH 29 329 154 HOH HOH A . W 10 HOH 30 330 212 HOH HOH A . W 10 HOH 31 331 229 HOH HOH A . W 10 HOH 32 332 17 HOH HOH A . W 10 HOH 33 333 234 HOH HOH A . W 10 HOH 34 334 28 HOH HOH A . W 10 HOH 35 335 143 HOH HOH A . W 10 HOH 36 336 130 HOH HOH A . W 10 HOH 37 337 248 HOH HOH A . W 10 HOH 38 338 14 HOH HOH A . W 10 HOH 39 339 214 HOH HOH A . W 10 HOH 40 340 156 HOH HOH A . W 10 HOH 41 341 57 HOH HOH A . W 10 HOH 42 342 249 HOH HOH A . W 10 HOH 43 343 8 HOH HOH A . W 10 HOH 44 344 106 HOH HOH A . W 10 HOH 45 345 69 HOH HOH A . W 10 HOH 46 346 252 HOH HOH A . W 10 HOH 47 347 169 HOH HOH A . W 10 HOH 48 348 262 HOH HOH A . W 10 HOH 49 349 84 HOH HOH A . W 10 HOH 50 350 161 HOH HOH A . W 10 HOH 51 351 64 HOH HOH A . W 10 HOH 52 352 2 HOH HOH A . W 10 HOH 53 353 44 HOH HOH A . W 10 HOH 54 354 273 HOH HOH A . W 10 HOH 55 355 237 HOH HOH A . W 10 HOH 56 356 34 HOH HOH A . W 10 HOH 57 357 76 HOH HOH A . W 10 HOH 58 358 22 HOH HOH A . W 10 HOH 59 359 172 HOH HOH A . W 10 HOH 60 360 176 HOH HOH A . W 10 HOH 61 361 160 HOH HOH A . W 10 HOH 62 362 47 HOH HOH A . W 10 HOH 63 363 265 HOH HOH A . W 10 HOH 64 364 244 HOH HOH A . W 10 HOH 65 365 120 HOH HOH A . W 10 HOH 66 366 235 HOH HOH A . W 10 HOH 67 367 26 HOH HOH A . W 10 HOH 68 368 167 HOH HOH A . W 10 HOH 69 369 20 HOH HOH A . W 10 HOH 70 370 270 HOH HOH A . W 10 HOH 71 371 9 HOH HOH A . W 10 HOH 72 372 32 HOH HOH A . W 10 HOH 73 373 168 HOH HOH A . W 10 HOH 74 374 228 HOH HOH A . W 10 HOH 75 375 162 HOH HOH A . W 10 HOH 76 376 126 HOH HOH A . W 10 HOH 77 377 135 HOH HOH A . W 10 HOH 78 378 108 HOH HOH A . W 10 HOH 79 379 42 HOH HOH A . W 10 HOH 80 380 95 HOH HOH A . W 10 HOH 81 381 122 HOH HOH A . W 10 HOH 82 382 50 HOH HOH A . W 10 HOH 83 383 96 HOH HOH A . W 10 HOH 84 384 194 HOH HOH A . W 10 HOH 85 385 182 HOH HOH A . W 10 HOH 86 386 205 HOH HOH A . W 10 HOH 87 387 255 HOH HOH A . W 10 HOH 88 388 250 HOH HOH A . W 10 HOH 89 389 23 HOH HOH A . W 10 HOH 90 390 257 HOH HOH A . W 10 HOH 91 391 1 HOH HOH A . W 10 HOH 92 392 284 HOH HOH A . W 10 HOH 93 393 59 HOH HOH A . W 10 HOH 94 394 180 HOH HOH A . W 10 HOH 95 395 4 HOH HOH A . W 10 HOH 96 396 104 HOH HOH A . W 10 HOH 97 397 55 HOH HOH A . W 10 HOH 98 398 139 HOH HOH A . W 10 HOH 99 399 236 HOH HOH A . W 10 HOH 100 400 247 HOH HOH A . W 10 HOH 101 401 198 HOH HOH A . W 10 HOH 102 402 208 HOH HOH A . W 10 HOH 103 403 242 HOH HOH A . W 10 HOH 104 404 91 HOH HOH A . W 10 HOH 105 405 219 HOH HOH A . W 10 HOH 106 406 112 HOH HOH A . W 10 HOH 107 407 264 HOH HOH A . W 10 HOH 108 408 124 HOH HOH A . W 10 HOH 109 409 51 HOH HOH A . W 10 HOH 110 410 254 HOH HOH A . W 10 HOH 111 411 216 HOH HOH A . W 10 HOH 112 412 238 HOH HOH A . W 10 HOH 113 413 86 HOH HOH A . W 10 HOH 114 414 155 HOH HOH A . W 10 HOH 115 415 171 HOH HOH A . W 10 HOH 116 416 259 HOH HOH A . W 10 HOH 117 417 56 HOH HOH A . W 10 HOH 118 418 261 HOH HOH A . W 10 HOH 119 419 40 HOH HOH A . W 10 HOH 120 420 163 HOH HOH A . W 10 HOH 121 421 151 HOH HOH A . W 10 HOH 122 422 54 HOH HOH A . W 10 HOH 123 423 66 HOH HOH A . W 10 HOH 124 424 127 HOH HOH A . W 10 HOH 125 425 7 HOH HOH A . W 10 HOH 126 426 92 HOH HOH A . W 10 HOH 127 427 197 HOH HOH A . W 10 HOH 128 428 278 HOH HOH A . W 10 HOH 129 429 241 HOH HOH A . W 10 HOH 130 430 207 HOH HOH A . W 10 HOH 131 431 98 HOH HOH A . W 10 HOH 132 432 246 HOH HOH A . W 10 HOH 133 433 245 HOH HOH A . W 10 HOH 134 434 274 HOH HOH A . W 10 HOH 135 435 148 HOH HOH A . W 10 HOH 136 436 68 HOH HOH A . W 10 HOH 137 437 263 HOH HOH A . W 10 HOH 138 438 224 HOH HOH A . W 10 HOH 139 439 240 HOH HOH A . W 10 HOH 140 440 129 HOH HOH A . W 10 HOH 141 441 268 HOH HOH A . W 10 HOH 142 442 192 HOH HOH A . W 10 HOH 143 443 27 HOH HOH A . W 10 HOH 144 444 222 HOH HOH A . W 10 HOH 145 445 132 HOH HOH A . W 10 HOH 146 446 90 HOH HOH A . W 10 HOH 147 447 218 HOH HOH A . W 10 HOH 148 448 102 HOH HOH A . W 10 HOH 149 449 189 HOH HOH A . W 10 HOH 150 450 260 HOH HOH A . W 10 HOH 151 451 128 HOH HOH A . W 10 HOH 152 452 210 HOH HOH A . W 10 HOH 153 453 280 HOH HOH A . W 10 HOH 154 454 73 HOH HOH A . W 10 HOH 155 455 123 HOH HOH A . W 10 HOH 156 456 63 HOH HOH A . W 10 HOH 157 457 24 HOH HOH A . W 10 HOH 158 458 285 HOH HOH A . W 10 HOH 159 459 251 HOH HOH A . W 10 HOH 160 460 67 HOH HOH A . W 10 HOH 161 461 287 HOH HOH A . W 10 HOH 162 462 253 HOH HOH A . W 10 HOH 163 463 136 HOH HOH A . W 10 HOH 164 464 186 HOH HOH A . W 10 HOH 165 465 283 HOH HOH A . W 10 HOH 166 466 93 HOH HOH A . W 10 HOH 167 467 61 HOH HOH A . W 10 HOH 168 468 144 HOH HOH A . W 10 HOH 169 469 239 HOH HOH A . W 10 HOH 170 470 18 HOH HOH A . W 10 HOH 171 471 74 HOH HOH A . W 10 HOH 172 472 275 HOH HOH A . W 10 HOH 173 473 179 HOH HOH A . W 10 HOH 174 474 82 HOH HOH A . W 10 HOH 175 475 35 HOH HOH A . W 10 HOH 176 476 203 HOH HOH A . W 10 HOH 177 477 185 HOH HOH A . W 10 HOH 178 478 170 HOH HOH A . W 10 HOH 179 479 206 HOH HOH A . X 10 HOH 1 101 109 HOH HOH B . X 10 HOH 2 102 97 HOH HOH B . X 10 HOH 3 103 220 HOH HOH B . X 10 HOH 4 104 79 HOH HOH B . X 10 HOH 5 105 147 HOH HOH B . X 10 HOH 6 106 80 HOH HOH B . X 10 HOH 7 107 150 HOH HOH B . X 10 HOH 8 108 271 HOH HOH B . X 10 HOH 9 109 269 HOH HOH B . X 10 HOH 10 110 15 HOH HOH B . Y 10 HOH 1 201 88 HOH HOH b . Y 10 HOH 2 202 217 HOH HOH b . Y 10 HOH 3 203 133 HOH HOH b . Y 10 HOH 4 204 174 HOH HOH b . Y 10 HOH 5 205 230 HOH HOH b . Y 10 HOH 6 206 231 HOH HOH b . Z 10 HOH 1 201 110 HOH HOH C . Z 10 HOH 2 202 258 HOH HOH C . Z 10 HOH 3 203 30 HOH HOH C . Z 10 HOH 4 204 256 HOH HOH C . Z 10 HOH 5 205 114 HOH HOH C . Z 10 HOH 6 206 19 HOH HOH C . Z 10 HOH 7 207 288 HOH HOH C . Z 10 HOH 8 208 209 HOH HOH C . Z 10 HOH 9 209 33 HOH HOH C . Z 10 HOH 10 210 289 HOH HOH C . Z 10 HOH 11 211 78 HOH HOH C . Z 10 HOH 12 212 281 HOH HOH C . Z 10 HOH 13 213 221 HOH HOH C . Z 10 HOH 14 214 142 HOH HOH C . Z 10 HOH 15 215 266 HOH HOH C . Z 10 HOH 16 216 279 HOH HOH C . Z 10 HOH 17 217 58 HOH HOH C . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5840 ? 1 MORE -37 ? 1 'SSA (A^2)' 8180 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 107.5 ? 2 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? W HOH . ? A HOH 327 ? 1_555 87.2 ? 3 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? W HOH . ? A HOH 327 ? 1_555 85.6 ? 4 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? W HOH . ? A HOH 351 ? 1_555 88.4 ? 5 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? W HOH . ? A HOH 351 ? 1_555 86.8 ? 6 O ? W HOH . ? A HOH 327 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O ? W HOH . ? A HOH 351 ? 1_555 169.6 ? 7 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 B C C 1 ? b C 5 ? 1_555 159.8 ? 8 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 B C C 1 ? b C 5 ? 1_555 92.5 ? 9 O ? W HOH . ? A HOH 327 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 B C C 1 ? b C 5 ? 1_555 96.4 ? 10 O ? W HOH . ? A HOH 351 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP3 B C C 1 ? b C 5 ? 1_555 91.0 ? 11 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 100.0 ? 12 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 152.4 ? 13 O ? W HOH . ? A HOH 327 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 97.8 ? 14 O ? W HOH . ? A HOH 351 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 92.2 ? 15 OP3 B C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 59.9 ? 16 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 97.3 ? 17 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 154.4 ? 18 O ? W HOH . ? A HOH 327 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 101.9 ? 19 O ? W HOH . ? A HOH 351 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 88.0 ? 20 OP3 B C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 62.6 ? 21 OP1 B C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 5.0 ? 22 OD2 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 161.0 ? 23 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 90.6 ? 24 O ? W HOH . ? A HOH 327 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 88.7 ? 25 O ? W HOH . ? A HOH 351 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 98.4 ? 26 OP3 B C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 7.8 ? 27 OP1 B C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 62.2 ? 28 OP1 C C C 1 ? b C 5 ? 1_555 MN ? E MN . ? A MN 201 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 65.5 ? 29 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 99.2 ? 30 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 133.3 ? 31 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 94.2 ? 32 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 102.2 ? 33 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 149.6 ? 34 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 55.4 ? 35 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 "O3'" C B U 4 ? B U 4 ? 1_555 147.9 ? 36 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 "O3'" C B U 4 ? B U 4 ? 1_555 84.3 ? 37 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 "O3'" C B U 4 ? B U 4 ? 1_555 77.6 ? 38 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 "O3'" C B U 4 ? B U 4 ? 1_555 88.8 ? 39 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 91.9 ? 40 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 107.3 ? 41 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 126.2 ? 42 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 93.4 ? 43 "O3'" C B U 4 ? B U 4 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 B C C 1 ? b C 5 ? 1_555 57.1 ? 44 OD1 ? A ASP 11 ? A ASP 71 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 91.3 ? 45 OE1 ? A GLU 49 ? A GLU 109 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 111.7 ? 46 OD1 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 124.5 ? 47 OD2 ? A ASP 72 ? A ASP 132 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 89.3 ? 48 "O3'" C B U 4 ? B U 4 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 58.4 ? 49 OP1 B C C 1 ? b C 5 ? 1_555 MN ? F MN . ? A MN 202 ? 1_555 OP1 C C C 1 ? b C 5 ? 1_555 4.4 ? 50 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 103.2 ? 51 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 302 ? 1_555 170.5 ? 52 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 302 ? 1_555 79.5 ? 53 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 342 ? 4_556 101.2 ? 54 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 342 ? 4_556 154.4 ? 55 O ? W HOH . ? A HOH 302 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 342 ? 4_556 75.2 ? 56 OD1 ? A ASP 103 ? A ASP 163 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 426 ? 1_555 85.2 ? 57 OE1 ? A GLU 106 ? A GLU 166 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 426 ? 1_555 96.4 ? 58 O ? W HOH . ? A HOH 302 ? 1_555 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 426 ? 1_555 85.5 ? 59 O ? W HOH . ? A HOH 342 ? 4_556 MN ? G MN . ? A MN 203 ? 1_555 O ? W HOH . ? A HOH 426 ? 1_555 78.0 ? 60 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K B T K . ? A K 216 ? 1_555 O ? W HOH . ? A HOH 358 ? 1_555 61.1 ? 61 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K B T K . ? A K 216 ? 1_555 O ? X HOH . ? B HOH 109 ? 1_555 107.7 ? 62 O ? W HOH . ? A HOH 358 ? 1_555 K B T K . ? A K 216 ? 1_555 O ? X HOH . ? B HOH 109 ? 1_555 123.3 ? 63 OE2 ? A GLU 128 ? A GLU 188 ? 1_555 K B T K . ? A K 216 ? 1_555 OP2 B C C 1 ? b C 5 ? 1_555 97.1 ? 64 O ? W HOH . ? A HOH 358 ? 1_555 K B T K . ? A K 216 ? 1_555 OP2 B C C 1 ? b C 5 ? 1_555 130.7 ? 65 O ? X HOH . ? B HOH 109 ? 1_555 K B T K . ? A K 216 ? 1_555 OP2 B C C 1 ? b C 5 ? 1_555 104.9 ? 66 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 K C H K . ? A K 204 ? 1_555 O ? W HOH . ? A HOH 370 ? 1_555 82.0 ? 67 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 K C H K . ? A K 204 ? 1_555 OP2 ? C G 2 ? b G 6 ? 1_555 99.8 ? 68 O ? W HOH . ? A HOH 370 ? 1_555 K C H K . ? A K 204 ? 1_555 OP2 ? C G 2 ? b G 6 ? 1_555 166.5 ? 69 OD1 ? A ASP 132 ? A ASP 192 ? 1_555 K C H K . ? A K 204 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 61.1 ? 70 O ? W HOH . ? A HOH 370 ? 1_555 K C H K . ? A K 204 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 108.1 ? 71 OP2 ? C G 2 ? b G 6 ? 1_555 K C H K . ? A K 204 ? 1_555 O C Y HOH . ? b HOH 201 ? 1_555 62.3 ? 72 O6 ? C G 2 ? b G 6 ? 1_555 MN ? U MN . ? b MN 101 ? 1_555 O ? Y HOH . ? b HOH 202 ? 1_555 90.7 ? 73 O6 ? C G 2 ? b G 6 ? 1_555 MN ? U MN . ? b MN 101 ? 1_555 O ? Z HOH . ? C HOH 207 ? 4_545 96.1 ? 74 O ? Y HOH . ? b HOH 202 ? 1_555 MN ? U MN . ? b MN 101 ? 1_555 O ? Z HOH . ? C HOH 207 ? 4_545 173.2 ? 75 O4 ? D DT 4 ? C DT 4 ? 1_555 K A V K . ? C K 101 ? 1_555 O6 ? D DG 5 ? C DG 5 ? 1_555 75.2 ? 76 O4 ? D DT 4 ? C DT 4 ? 1_555 K A V K . ? C K 101 ? 1_555 O ? Z HOH . ? C HOH 210 ? 1_555 86.7 ? 77 O6 ? D DG 5 ? C DG 5 ? 1_555 K A V K . ? C K 101 ? 1_555 O ? Z HOH . ? C HOH 210 ? 1_555 82.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-08-15 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_conn_type # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 2 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 18 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 23 2 'Structure model' '_pdbx_struct_conn_angle.value' 24 2 'Structure model' '_struct_conn.conn_type_id' 25 2 'Structure model' '_struct_conn.id' 26 2 'Structure model' '_struct_conn.pdbx_dist_value' 27 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 28 2 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 29 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 30 2 'Structure model' '_struct_conn.pdbx_value_order' 31 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 32 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 33 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 34 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 35 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 36 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 37 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 38 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 39 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 40 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 41 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 42 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 43 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 44 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 45 2 'Structure model' '_struct_conn.ptnr2_symmetry' 46 2 'Structure model' '_struct_conn_type.id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 40.4779 -4.2769 18.7267 0.2118 0.5016 0.2730 0.0910 0.0569 0.0425 6.6020 7.5395 3.2965 0.1039 -1.4328 2.9937 0.1380 -0.3250 0.1225 0.8910 0.2756 -0.6071 -0.7076 -0.0067 1.4667 'X-RAY DIFFRACTION' 2 ? refined 21.3681 -6.2731 16.2548 0.1951 0.1769 0.1674 0.0191 0.0052 -0.0035 2.0715 1.9445 2.1929 1.4841 1.8390 1.5849 0.1137 -0.1220 -0.0320 0.1975 -0.0598 0.1155 -0.1647 0.1383 0.0342 'X-RAY DIFFRACTION' 3 ? refined 17.8200 -6.5793 16.6481 0.1966 0.1492 0.1801 0.0097 0.0075 -0.0180 9.3245 0.7095 5.8405 -0.7656 6.3818 -0.8593 0.3519 -0.1114 -0.2980 0.2007 -0.5730 0.0964 -0.1665 0.2269 0.0653 'X-RAY DIFFRACTION' 4 ? refined 27.8477 -11.6536 23.8565 0.2213 0.1714 0.2911 0.0378 0.0080 0.0203 5.5726 5.6578 8.8826 -3.0984 -6.7231 2.0197 -0.1893 0.0191 0.1740 -0.2456 -0.9741 -0.2444 0.1140 0.5522 0.4070 'X-RAY DIFFRACTION' 5 ? refined 10.2097 -4.9336 18.5330 0.1474 0.1744 0.1308 -0.0001 0.0164 -0.0383 9.2396 8.9164 5.7937 -1.8524 2.9135 -6.4664 0.0085 0.3376 -0.3908 -0.3550 -0.4804 0.4517 -0.0739 0.0990 -0.7415 'X-RAY DIFFRACTION' 6 ? refined 20.9666 0.5876 23.9570 0.1118 0.0911 0.1239 0.0090 0.0339 0.0010 5.6985 1.1608 7.7679 -0.7190 5.2687 -0.3415 -0.0229 -0.0685 0.0927 -0.1928 0.0622 0.0477 0.0110 -0.0677 -0.2901 'X-RAY DIFFRACTION' 7 ? refined 30.7499 -1.0185 25.3954 0.1062 0.1160 0.1227 -0.0071 0.0276 0.0009 5.2926 1.9684 5.3061 -1.0792 4.5855 0.3611 0.0726 -0.0542 -0.0220 -0.0845 0.0910 -0.0525 -0.0010 0.1251 -0.0434 'X-RAY DIFFRACTION' 8 ? refined 23.7201 9.4207 16.7141 0.2668 0.1297 0.1863 -0.0140 0.0561 0.0326 6.8850 7.1212 6.6898 -6.2673 -0.4401 2.5940 0.2705 -0.0845 -0.1756 0.0722 0.3587 -0.3224 -0.2508 -0.6953 0.1098 'X-RAY DIFFRACTION' 9 ? refined 8.5457 7.7339 16.1097 0.2713 0.2876 0.2034 0.1528 0.0183 -0.0555 7.1944 2.2974 6.4105 -1.3725 2.3875 -0.0002 -0.0008 -0.3165 0.2390 0.0754 0.3510 0.5368 -0.3421 -0.5357 -0.7990 'X-RAY DIFFRACTION' 10 ? refined 12.2400 5.6980 24.8432 0.1994 0.2420 0.1792 0.0572 0.0249 -0.0133 5.5533 3.4206 4.5386 3.3144 4.9562 3.3984 0.2170 -0.2844 0.1024 -0.2029 0.0974 0.1287 0.0659 -0.1794 -0.5074 'X-RAY DIFFRACTION' 11 ? refined 26.2409 8.3153 30.3453 0.1964 0.1397 0.1603 -0.0112 0.0137 0.0222 4.2784 8.7542 4.7876 -4.7047 -1.1760 5.0868 0.2446 0.0656 -0.2063 -0.1535 0.3642 -0.3303 -0.2208 -0.5008 0.2137 'X-RAY DIFFRACTION' 12 ? refined 34.2705 -0.8680 12.2619 0.2223 0.3212 0.1706 0.0601 0.0662 0.0316 2.3549 5.3790 7.8882 0.0462 0.8319 5.3149 0.1985 -0.1494 -0.1639 0.6162 -0.0679 -0.3366 -0.5118 -0.0945 0.4371 'X-RAY DIFFRACTION' 13 ? refined 26.6044 -9.3271 12.8269 0.2491 0.2130 0.1876 0.0718 0.0032 -0.0451 8.9671 4.1535 3.3186 3.1399 -3.7439 0.7580 0.2098 -0.1534 0.1468 0.1912 -0.5352 0.2831 -0.1340 0.3110 0.2205 'X-RAY DIFFRACTION' 14 ? refined 23.6372 0.8898 5.0501 0.2842 0.2455 0.1705 0.0730 0.0520 0.0131 5.4924 2.1670 1.4893 2.1658 2.2870 0.2607 -0.1284 -0.0361 0.2019 0.4634 0.1801 -0.1679 -0.4351 0.0024 0.1525 'X-RAY DIFFRACTION' 15 ? refined 16.4190 3.7864 3.1686 0.3620 0.2164 0.1455 0.0667 -0.0180 0.0211 2.1586 5.6985 3.3248 -1.2748 -1.8935 3.0104 0.0078 -0.2958 0.3749 0.3327 -0.1026 0.0243 -0.8521 -0.5126 -0.1233 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 61 A 66 '( CHAIN A AND RESID 61:66 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 67 A 75 '( CHAIN A AND RESID 67:75 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 76 A 87 '( CHAIN A AND RESID 76:87 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 88 A 96 '( CHAIN A AND RESID 88:96 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 5 5 A 97 A 104 '( CHAIN A AND RESID 97:104 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 6 6 A 105 A 122 '( CHAIN A AND RESID 105:122 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 7 7 A 123 A 133 '( CHAIN A AND RESID 123:133 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 8 8 A 134 A 142 '( CHAIN A AND RESID 134:142 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 9 9 A 143 A 155 '( CHAIN A AND RESID 143:155 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 10 10 A 156 A 169 '( CHAIN A AND RESID 156:169 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 11 11 A 170 A 177 '( CHAIN A AND RESID 170:177 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 12 12 A 178 A 186 '( CHAIN A AND RESID 178:186 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 13 13 A 187 A 194 '( CHAIN A AND RESID 187:194 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 14 14 B 1 B 4 '( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 15 14 b 5 b 6 '( CHAIN B AND RESID 1:4 ) OR ( CHAIN b AND RESID 5:6 )' ? ? ? ? ? 'X-RAY DIFFRACTION' 16 15 C 1 C 6 '( CHAIN C AND RESID 1:6 )' ? ? ? ? ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.31 1 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.10_2155 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 5 # _pdbx_entry_details.compound_details 'The RNA chain B was split into 2 chains (B and b)' _pdbx_entry_details.entry_id 6DPB _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'The RNA chain B was split into 2 chains (B and b) at the position 4-5, where the cleavage occurs' _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 373 ? ? O A HOH 460 ? ? 2.06 2 1 OH A TYR 174 ? B O A HOH 301 ? ? 2.08 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OE2 A GLU 66 ? ? 1_555 O3 A GOL 214 ? ? 2_656 1.26 2 1 OE2 A GLU 62 ? ? 1_555 O A HOH 449 ? ? 3_545 2.19 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 b _pdbx_validate_rmsd_bond.auth_comp_id_1 C _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 B _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 b _pdbx_validate_rmsd_bond.auth_comp_id_2 C _pdbx_validate_rmsd_bond.auth_seq_id_2 5 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 B _pdbx_validate_rmsd_bond.bond_value 1.465 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.142 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O5'" b C 5 ? B P b C 5 ? B OP1 b C 5 ? B 96.28 105.70 -9.42 0.90 N 2 1 "O4'" C DG 2 ? ? "C1'" C DG 2 ? ? N9 C DG 2 ? ? 110.66 108.30 2.36 0.30 N # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 476 ? 6.22 . 2 1 O ? A HOH 477 ? 6.42 . 3 1 O ? A HOH 478 ? 6.52 . 4 1 O ? A HOH 479 ? 6.58 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B A 1 ? "O2'" ? B A 1 "O2'" 2 1 Y 1 b G 6 ? "O2'" ? C G 2 "O2'" # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 C OP3 O N N 111 C P P N N 112 C OP1 O N N 113 C OP2 O N N 114 C "O5'" O N N 115 C "C5'" C N N 116 C "C4'" C N R 117 C "O4'" O N N 118 C "C3'" C N S 119 C "O3'" O N N 120 C "C2'" C N R 121 C "O2'" O N N 122 C "C1'" C N R 123 C N1 N N N 124 C C2 C N N 125 C O2 O N N 126 C N3 N N N 127 C C4 C N N 128 C N4 N N N 129 C C5 C N N 130 C C6 C N N 131 C HOP3 H N N 132 C HOP2 H N N 133 C "H5'" H N N 134 C "H5''" H N N 135 C "H4'" H N N 136 C "H3'" H N N 137 C "HO3'" H N N 138 C "H2'" H N N 139 C "HO2'" H N N 140 C "H1'" H N N 141 C H41 H N N 142 C H42 H N N 143 C H5 H N N 144 C H6 H N N 145 DA OP3 O N N 146 DA P P N N 147 DA OP1 O N N 148 DA OP2 O N N 149 DA "O5'" O N N 150 DA "C5'" C N N 151 DA "C4'" C N R 152 DA "O4'" O N N 153 DA "C3'" C N S 154 DA "O3'" O N N 155 DA "C2'" C N N 156 DA "C1'" C N R 157 DA N9 N Y N 158 DA C8 C Y N 159 DA N7 N Y N 160 DA C5 C Y N 161 DA C6 C Y N 162 DA N6 N N N 163 DA N1 N Y N 164 DA C2 C Y N 165 DA N3 N Y N 166 DA C4 C Y N 167 DA HOP3 H N N 168 DA HOP2 H N N 169 DA "H5'" H N N 170 DA "H5''" H N N 171 DA "H4'" H N N 172 DA "H3'" H N N 173 DA "HO3'" H N N 174 DA "H2'" H N N 175 DA "H2''" H N N 176 DA "H1'" H N N 177 DA H8 H N N 178 DA H61 H N N 179 DA H62 H N N 180 DA H2 H N N 181 DC OP3 O N N 182 DC P P N N 183 DC OP1 O N N 184 DC OP2 O N N 185 DC "O5'" O N N 186 DC "C5'" C N N 187 DC "C4'" C N R 188 DC "O4'" O N N 189 DC "C3'" C N S 190 DC "O3'" O N N 191 DC "C2'" C N N 192 DC "C1'" C N R 193 DC N1 N N N 194 DC C2 C N N 195 DC O2 O N N 196 DC N3 N N N 197 DC C4 C N N 198 DC N4 N N N 199 DC C5 C N N 200 DC C6 C N N 201 DC HOP3 H N N 202 DC HOP2 H N N 203 DC "H5'" H N N 204 DC "H5''" H N N 205 DC "H4'" H N N 206 DC "H3'" H N N 207 DC "HO3'" H N N 208 DC "H2'" H N N 209 DC "H2''" H N N 210 DC "H1'" H N N 211 DC H41 H N N 212 DC H42 H N N 213 DC H5 H N N 214 DC H6 H N N 215 DG OP3 O N N 216 DG P P N N 217 DG OP1 O N N 218 DG OP2 O N N 219 DG "O5'" O N N 220 DG "C5'" C N N 221 DG "C4'" C N R 222 DG "O4'" O N N 223 DG "C3'" C N S 224 DG "O3'" O N N 225 DG "C2'" C N N 226 DG "C1'" C N R 227 DG N9 N Y N 228 DG C8 C Y N 229 DG N7 N Y N 230 DG C5 C Y N 231 DG C6 C N N 232 DG O6 O N N 233 DG N1 N N N 234 DG C2 C N N 235 DG N2 N N N 236 DG N3 N N N 237 DG C4 C Y N 238 DG HOP3 H N N 239 DG HOP2 H N N 240 DG "H5'" H N N 241 DG "H5''" H N N 242 DG "H4'" H N N 243 DG "H3'" H N N 244 DG "HO3'" H N N 245 DG "H2'" H N N 246 DG "H2''" H N N 247 DG "H1'" H N N 248 DG H8 H N N 249 DG H1 H N N 250 DG H21 H N N 251 DG H22 H N N 252 DT OP3 O N N 253 DT P P N N 254 DT OP1 O N N 255 DT OP2 O N N 256 DT "O5'" O N N 257 DT "C5'" C N N 258 DT "C4'" C N R 259 DT "O4'" O N N 260 DT "C3'" C N S 261 DT "O3'" O N N 262 DT "C2'" C N N 263 DT "C1'" C N R 264 DT N1 N N N 265 DT C2 C N N 266 DT O2 O N N 267 DT N3 N N N 268 DT C4 C N N 269 DT O4 O N N 270 DT C5 C N N 271 DT C7 C N N 272 DT C6 C N N 273 DT HOP3 H N N 274 DT HOP2 H N N 275 DT "H5'" H N N 276 DT "H5''" H N N 277 DT "H4'" H N N 278 DT "H3'" H N N 279 DT "HO3'" H N N 280 DT "H2'" H N N 281 DT "H2''" H N N 282 DT "H1'" H N N 283 DT H3 H N N 284 DT H71 H N N 285 DT H72 H N N 286 DT H73 H N N 287 DT H6 H N N 288 EDO C1 C N N 289 EDO O1 O N N 290 EDO C2 C N N 291 EDO O2 O N N 292 EDO H11 H N N 293 EDO H12 H N N 294 EDO HO1 H N N 295 EDO H21 H N N 296 EDO H22 H N N 297 EDO HO2 H N N 298 G OP3 O N N 299 G P P N N 300 G OP1 O N N 301 G OP2 O N N 302 G "O5'" O N N 303 G "C5'" C N N 304 G "C4'" C N R 305 G "O4'" O N N 306 G "C3'" C N S 307 G "O3'" O N N 308 G "C2'" C N R 309 G "O2'" O N N 310 G "C1'" C N R 311 G N9 N Y N 312 G C8 C Y N 313 G N7 N Y N 314 G C5 C Y N 315 G C6 C N N 316 G O6 O N N 317 G N1 N N N 318 G C2 C N N 319 G N2 N N N 320 G N3 N N N 321 G C4 C Y N 322 G HOP3 H N N 323 G HOP2 H N N 324 G "H5'" H N N 325 G "H5''" H N N 326 G "H4'" H N N 327 G "H3'" H N N 328 G "HO3'" H N N 329 G "H2'" H N N 330 G "HO2'" H N N 331 G "H1'" H N N 332 G H8 H N N 333 G H1 H N N 334 G H21 H N N 335 G H22 H N N 336 GLN N N N N 337 GLN CA C N S 338 GLN C C N N 339 GLN O O N N 340 GLN CB C N N 341 GLN CG C N N 342 GLN CD C N N 343 GLN OE1 O N N 344 GLN NE2 N N N 345 GLN OXT O N N 346 GLN H H N N 347 GLN H2 H N N 348 GLN HA H N N 349 GLN HB2 H N N 350 GLN HB3 H N N 351 GLN HG2 H N N 352 GLN HG3 H N N 353 GLN HE21 H N N 354 GLN HE22 H N N 355 GLN HXT H N N 356 GLU N N N N 357 GLU CA C N S 358 GLU C C N N 359 GLU O O N N 360 GLU CB C N N 361 GLU CG C N N 362 GLU CD C N N 363 GLU OE1 O N N 364 GLU OE2 O N N 365 GLU OXT O N N 366 GLU H H N N 367 GLU H2 H N N 368 GLU HA H N N 369 GLU HB2 H N N 370 GLU HB3 H N N 371 GLU HG2 H N N 372 GLU HG3 H N N 373 GLU HE2 H N N 374 GLU HXT H N N 375 GLY N N N N 376 GLY CA C N N 377 GLY C C N N 378 GLY O O N N 379 GLY OXT O N N 380 GLY H H N N 381 GLY H2 H N N 382 GLY HA2 H N N 383 GLY HA3 H N N 384 GLY HXT H N N 385 GOL C1 C N N 386 GOL O1 O N N 387 GOL C2 C N N 388 GOL O2 O N N 389 GOL C3 C N N 390 GOL O3 O N N 391 GOL H11 H N N 392 GOL H12 H N N 393 GOL HO1 H N N 394 GOL H2 H N N 395 GOL HO2 H N N 396 GOL H31 H N N 397 GOL H32 H N N 398 GOL HO3 H N N 399 HIS N N N N 400 HIS CA C N S 401 HIS C C N N 402 HIS O O N N 403 HIS CB C N N 404 HIS CG C Y N 405 HIS ND1 N Y N 406 HIS CD2 C Y N 407 HIS CE1 C Y N 408 HIS NE2 N Y N 409 HIS OXT O N N 410 HIS H H N N 411 HIS H2 H N N 412 HIS HA H N N 413 HIS HB2 H N N 414 HIS HB3 H N N 415 HIS HD1 H N N 416 HIS HD2 H N N 417 HIS HE1 H N N 418 HIS HE2 H N N 419 HIS HXT H N N 420 HOH O O N N 421 HOH H1 H N N 422 HOH H2 H N N 423 ILE N N N N 424 ILE CA C N S 425 ILE C C N N 426 ILE O O N N 427 ILE CB C N S 428 ILE CG1 C N N 429 ILE CG2 C N N 430 ILE CD1 C N N 431 ILE OXT O N N 432 ILE H H N N 433 ILE H2 H N N 434 ILE HA H N N 435 ILE HB H N N 436 ILE HG12 H N N 437 ILE HG13 H N N 438 ILE HG21 H N N 439 ILE HG22 H N N 440 ILE HG23 H N N 441 ILE HD11 H N N 442 ILE HD12 H N N 443 ILE HD13 H N N 444 ILE HXT H N N 445 IOD I I N N 446 K K K N N 447 LEU N N N N 448 LEU CA C N S 449 LEU C C N N 450 LEU O O N N 451 LEU CB C N N 452 LEU CG C N N 453 LEU CD1 C N N 454 LEU CD2 C N N 455 LEU OXT O N N 456 LEU H H N N 457 LEU H2 H N N 458 LEU HA H N N 459 LEU HB2 H N N 460 LEU HB3 H N N 461 LEU HG H N N 462 LEU HD11 H N N 463 LEU HD12 H N N 464 LEU HD13 H N N 465 LEU HD21 H N N 466 LEU HD22 H N N 467 LEU HD23 H N N 468 LEU HXT H N N 469 LYS N N N N 470 LYS CA C N S 471 LYS C C N N 472 LYS O O N N 473 LYS CB C N N 474 LYS CG C N N 475 LYS CD C N N 476 LYS CE C N N 477 LYS NZ N N N 478 LYS OXT O N N 479 LYS H H N N 480 LYS H2 H N N 481 LYS HA H N N 482 LYS HB2 H N N 483 LYS HB3 H N N 484 LYS HG2 H N N 485 LYS HG3 H N N 486 LYS HD2 H N N 487 LYS HD3 H N N 488 LYS HE2 H N N 489 LYS HE3 H N N 490 LYS HZ1 H N N 491 LYS HZ2 H N N 492 LYS HZ3 H N N 493 LYS HXT H N N 494 MET N N N N 495 MET CA C N S 496 MET C C N N 497 MET O O N N 498 MET CB C N N 499 MET CG C N N 500 MET SD S N N 501 MET CE C N N 502 MET OXT O N N 503 MET H H N N 504 MET H2 H N N 505 MET HA H N N 506 MET HB2 H N N 507 MET HB3 H N N 508 MET HG2 H N N 509 MET HG3 H N N 510 MET HE1 H N N 511 MET HE2 H N N 512 MET HE3 H N N 513 MET HXT H N N 514 MN MN MN N N 515 PHE N N N N 516 PHE CA C N S 517 PHE C C N N 518 PHE O O N N 519 PHE CB C N N 520 PHE CG C Y N 521 PHE CD1 C Y N 522 PHE CD2 C Y N 523 PHE CE1 C Y N 524 PHE CE2 C Y N 525 PHE CZ C Y N 526 PHE OXT O N N 527 PHE H H N N 528 PHE H2 H N N 529 PHE HA H N N 530 PHE HB2 H N N 531 PHE HB3 H N N 532 PHE HD1 H N N 533 PHE HD2 H N N 534 PHE HE1 H N N 535 PHE HE2 H N N 536 PHE HZ H N N 537 PHE HXT H N N 538 PRO N N N N 539 PRO CA C N S 540 PRO C C N N 541 PRO O O N N 542 PRO CB C N N 543 PRO CG C N N 544 PRO CD C N N 545 PRO OXT O N N 546 PRO H H N N 547 PRO HA H N N 548 PRO HB2 H N N 549 PRO HB3 H N N 550 PRO HG2 H N N 551 PRO HG3 H N N 552 PRO HD2 H N N 553 PRO HD3 H N N 554 PRO HXT H N N 555 SER N N N N 556 SER CA C N S 557 SER C C N N 558 SER O O N N 559 SER CB C N N 560 SER OG O N N 561 SER OXT O N N 562 SER H H N N 563 SER H2 H N N 564 SER HA H N N 565 SER HB2 H N N 566 SER HB3 H N N 567 SER HG H N N 568 SER HXT H N N 569 THR N N N N 570 THR CA C N S 571 THR C C N N 572 THR O O N N 573 THR CB C N R 574 THR OG1 O N N 575 THR CG2 C N N 576 THR OXT O N N 577 THR H H N N 578 THR H2 H N N 579 THR HA H N N 580 THR HB H N N 581 THR HG1 H N N 582 THR HG21 H N N 583 THR HG22 H N N 584 THR HG23 H N N 585 THR HXT H N N 586 TRP N N N N 587 TRP CA C N S 588 TRP C C N N 589 TRP O O N N 590 TRP CB C N N 591 TRP CG C Y N 592 TRP CD1 C Y N 593 TRP CD2 C Y N 594 TRP NE1 N Y N 595 TRP CE2 C Y N 596 TRP CE3 C Y N 597 TRP CZ2 C Y N 598 TRP CZ3 C Y N 599 TRP CH2 C Y N 600 TRP OXT O N N 601 TRP H H N N 602 TRP H2 H N N 603 TRP HA H N N 604 TRP HB2 H N N 605 TRP HB3 H N N 606 TRP HD1 H N N 607 TRP HE1 H N N 608 TRP HE3 H N N 609 TRP HZ2 H N N 610 TRP HZ3 H N N 611 TRP HH2 H N N 612 TRP HXT H N N 613 TYR N N N N 614 TYR CA C N S 615 TYR C C N N 616 TYR O O N N 617 TYR CB C N N 618 TYR CG C Y N 619 TYR CD1 C Y N 620 TYR CD2 C Y N 621 TYR CE1 C Y N 622 TYR CE2 C Y N 623 TYR CZ C Y N 624 TYR OH O N N 625 TYR OXT O N N 626 TYR H H N N 627 TYR H2 H N N 628 TYR HA H N N 629 TYR HB2 H N N 630 TYR HB3 H N N 631 TYR HD1 H N N 632 TYR HD2 H N N 633 TYR HE1 H N N 634 TYR HE2 H N N 635 TYR HH H N N 636 TYR HXT H N N 637 U OP3 O N N 638 U P P N N 639 U OP1 O N N 640 U OP2 O N N 641 U "O5'" O N N 642 U "C5'" C N N 643 U "C4'" C N R 644 U "O4'" O N N 645 U "C3'" C N S 646 U "O3'" O N N 647 U "C2'" C N R 648 U "O2'" O N N 649 U "C1'" C N R 650 U N1 N N N 651 U C2 C N N 652 U O2 O N N 653 U N3 N N N 654 U C4 C N N 655 U O4 O N N 656 U C5 C N N 657 U C6 C N N 658 U HOP3 H N N 659 U HOP2 H N N 660 U "H5'" H N N 661 U "H5''" H N N 662 U "H4'" H N N 663 U "H3'" H N N 664 U "HO3'" H N N 665 U "H2'" H N N 666 U "HO2'" H N N 667 U "H1'" H N N 668 U H3 H N N 669 U H5 H N N 670 U H6 H N N 671 VAL N N N N 672 VAL CA C N S 673 VAL C C N N 674 VAL O O N N 675 VAL CB C N N 676 VAL CG1 C N N 677 VAL CG2 C N N 678 VAL OXT O N N 679 VAL H H N N 680 VAL H2 H N N 681 VAL HA H N N 682 VAL HB H N N 683 VAL HG11 H N N 684 VAL HG12 H N N 685 VAL HG13 H N N 686 VAL HG21 H N N 687 VAL HG22 H N N 688 VAL HG23 H N N 689 VAL HXT H N N 690 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ALA N CA sing N N 40 ALA N H sing N N 41 ALA N H2 sing N N 42 ALA CA C sing N N 43 ALA CA CB sing N N 44 ALA CA HA sing N N 45 ALA C O doub N N 46 ALA C OXT sing N N 47 ALA CB HB1 sing N N 48 ALA CB HB2 sing N N 49 ALA CB HB3 sing N N 50 ALA OXT HXT sing N N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 C OP3 P sing N N 109 C OP3 HOP3 sing N N 110 C P OP1 doub N N 111 C P OP2 sing N N 112 C P "O5'" sing N N 113 C OP2 HOP2 sing N N 114 C "O5'" "C5'" sing N N 115 C "C5'" "C4'" sing N N 116 C "C5'" "H5'" sing N N 117 C "C5'" "H5''" sing N N 118 C "C4'" "O4'" sing N N 119 C "C4'" "C3'" sing N N 120 C "C4'" "H4'" sing N N 121 C "O4'" "C1'" sing N N 122 C "C3'" "O3'" sing N N 123 C "C3'" "C2'" sing N N 124 C "C3'" "H3'" sing N N 125 C "O3'" "HO3'" sing N N 126 C "C2'" "O2'" sing N N 127 C "C2'" "C1'" sing N N 128 C "C2'" "H2'" sing N N 129 C "O2'" "HO2'" sing N N 130 C "C1'" N1 sing N N 131 C "C1'" "H1'" sing N N 132 C N1 C2 sing N N 133 C N1 C6 sing N N 134 C C2 O2 doub N N 135 C C2 N3 sing N N 136 C N3 C4 doub N N 137 C C4 N4 sing N N 138 C C4 C5 sing N N 139 C N4 H41 sing N N 140 C N4 H42 sing N N 141 C C5 C6 doub N N 142 C C5 H5 sing N N 143 C C6 H6 sing N N 144 DA OP3 P sing N N 145 DA OP3 HOP3 sing N N 146 DA P OP1 doub N N 147 DA P OP2 sing N N 148 DA P "O5'" sing N N 149 DA OP2 HOP2 sing N N 150 DA "O5'" "C5'" sing N N 151 DA "C5'" "C4'" sing N N 152 DA "C5'" "H5'" sing N N 153 DA "C5'" "H5''" sing N N 154 DA "C4'" "O4'" sing N N 155 DA "C4'" "C3'" sing N N 156 DA "C4'" "H4'" sing N N 157 DA "O4'" "C1'" sing N N 158 DA "C3'" "O3'" sing N N 159 DA "C3'" "C2'" sing N N 160 DA "C3'" "H3'" sing N N 161 DA "O3'" "HO3'" sing N N 162 DA "C2'" "C1'" sing N N 163 DA "C2'" "H2'" sing N N 164 DA "C2'" "H2''" sing N N 165 DA "C1'" N9 sing N N 166 DA "C1'" "H1'" sing N N 167 DA N9 C8 sing Y N 168 DA N9 C4 sing Y N 169 DA C8 N7 doub Y N 170 DA C8 H8 sing N N 171 DA N7 C5 sing Y N 172 DA C5 C6 sing Y N 173 DA C5 C4 doub Y N 174 DA C6 N6 sing N N 175 DA C6 N1 doub Y N 176 DA N6 H61 sing N N 177 DA N6 H62 sing N N 178 DA N1 C2 sing Y N 179 DA C2 N3 doub Y N 180 DA C2 H2 sing N N 181 DA N3 C4 sing Y N 182 DC OP3 P sing N N 183 DC OP3 HOP3 sing N N 184 DC P OP1 doub N N 185 DC P OP2 sing N N 186 DC P "O5'" sing N N 187 DC OP2 HOP2 sing N N 188 DC "O5'" "C5'" sing N N 189 DC "C5'" "C4'" sing N N 190 DC "C5'" "H5'" sing N N 191 DC "C5'" "H5''" sing N N 192 DC "C4'" "O4'" sing N N 193 DC "C4'" "C3'" sing N N 194 DC "C4'" "H4'" sing N N 195 DC "O4'" "C1'" sing N N 196 DC "C3'" "O3'" sing N N 197 DC "C3'" "C2'" sing N N 198 DC "C3'" "H3'" sing N N 199 DC "O3'" "HO3'" sing N N 200 DC "C2'" "C1'" sing N N 201 DC "C2'" "H2'" sing N N 202 DC "C2'" "H2''" sing N N 203 DC "C1'" N1 sing N N 204 DC "C1'" "H1'" sing N N 205 DC N1 C2 sing N N 206 DC N1 C6 sing N N 207 DC C2 O2 doub N N 208 DC C2 N3 sing N N 209 DC N3 C4 doub N N 210 DC C4 N4 sing N N 211 DC C4 C5 sing N N 212 DC N4 H41 sing N N 213 DC N4 H42 sing N N 214 DC C5 C6 doub N N 215 DC C5 H5 sing N N 216 DC C6 H6 sing N N 217 DG OP3 P sing N N 218 DG OP3 HOP3 sing N N 219 DG P OP1 doub N N 220 DG P OP2 sing N N 221 DG P "O5'" sing N N 222 DG OP2 HOP2 sing N N 223 DG "O5'" "C5'" sing N N 224 DG "C5'" "C4'" sing N N 225 DG "C5'" "H5'" sing N N 226 DG "C5'" "H5''" sing N N 227 DG "C4'" "O4'" sing N N 228 DG "C4'" "C3'" sing N N 229 DG "C4'" "H4'" sing N N 230 DG "O4'" "C1'" sing N N 231 DG "C3'" "O3'" sing N N 232 DG "C3'" "C2'" sing N N 233 DG "C3'" "H3'" sing N N 234 DG "O3'" "HO3'" sing N N 235 DG "C2'" "C1'" sing N N 236 DG "C2'" "H2'" sing N N 237 DG "C2'" "H2''" sing N N 238 DG "C1'" N9 sing N N 239 DG "C1'" "H1'" sing N N 240 DG N9 C8 sing Y N 241 DG N9 C4 sing Y N 242 DG C8 N7 doub Y N 243 DG C8 H8 sing N N 244 DG N7 C5 sing Y N 245 DG C5 C6 sing N N 246 DG C5 C4 doub Y N 247 DG C6 O6 doub N N 248 DG C6 N1 sing N N 249 DG N1 C2 sing N N 250 DG N1 H1 sing N N 251 DG C2 N2 sing N N 252 DG C2 N3 doub N N 253 DG N2 H21 sing N N 254 DG N2 H22 sing N N 255 DG N3 C4 sing N N 256 DT OP3 P sing N N 257 DT OP3 HOP3 sing N N 258 DT P OP1 doub N N 259 DT P OP2 sing N N 260 DT P "O5'" sing N N 261 DT OP2 HOP2 sing N N 262 DT "O5'" "C5'" sing N N 263 DT "C5'" "C4'" sing N N 264 DT "C5'" "H5'" sing N N 265 DT "C5'" "H5''" sing N N 266 DT "C4'" "O4'" sing N N 267 DT "C4'" "C3'" sing N N 268 DT "C4'" "H4'" sing N N 269 DT "O4'" "C1'" sing N N 270 DT "C3'" "O3'" sing N N 271 DT "C3'" "C2'" sing N N 272 DT "C3'" "H3'" sing N N 273 DT "O3'" "HO3'" sing N N 274 DT "C2'" "C1'" sing N N 275 DT "C2'" "H2'" sing N N 276 DT "C2'" "H2''" sing N N 277 DT "C1'" N1 sing N N 278 DT "C1'" "H1'" sing N N 279 DT N1 C2 sing N N 280 DT N1 C6 sing N N 281 DT C2 O2 doub N N 282 DT C2 N3 sing N N 283 DT N3 C4 sing N N 284 DT N3 H3 sing N N 285 DT C4 O4 doub N N 286 DT C4 C5 sing N N 287 DT C5 C7 sing N N 288 DT C5 C6 doub N N 289 DT C7 H71 sing N N 290 DT C7 H72 sing N N 291 DT C7 H73 sing N N 292 DT C6 H6 sing N N 293 EDO C1 O1 sing N N 294 EDO C1 C2 sing N N 295 EDO C1 H11 sing N N 296 EDO C1 H12 sing N N 297 EDO O1 HO1 sing N N 298 EDO C2 O2 sing N N 299 EDO C2 H21 sing N N 300 EDO C2 H22 sing N N 301 EDO O2 HO2 sing N N 302 G OP3 P sing N N 303 G OP3 HOP3 sing N N 304 G P OP1 doub N N 305 G P OP2 sing N N 306 G P "O5'" sing N N 307 G OP2 HOP2 sing N N 308 G "O5'" "C5'" sing N N 309 G "C5'" "C4'" sing N N 310 G "C5'" "H5'" sing N N 311 G "C5'" "H5''" sing N N 312 G "C4'" "O4'" sing N N 313 G "C4'" "C3'" sing N N 314 G "C4'" "H4'" sing N N 315 G "O4'" "C1'" sing N N 316 G "C3'" "O3'" sing N N 317 G "C3'" "C2'" sing N N 318 G "C3'" "H3'" sing N N 319 G "O3'" "HO3'" sing N N 320 G "C2'" "O2'" sing N N 321 G "C2'" "C1'" sing N N 322 G "C2'" "H2'" sing N N 323 G "O2'" "HO2'" sing N N 324 G "C1'" N9 sing N N 325 G "C1'" "H1'" sing N N 326 G N9 C8 sing Y N 327 G N9 C4 sing Y N 328 G C8 N7 doub Y N 329 G C8 H8 sing N N 330 G N7 C5 sing Y N 331 G C5 C6 sing N N 332 G C5 C4 doub Y N 333 G C6 O6 doub N N 334 G C6 N1 sing N N 335 G N1 C2 sing N N 336 G N1 H1 sing N N 337 G C2 N2 sing N N 338 G C2 N3 doub N N 339 G N2 H21 sing N N 340 G N2 H22 sing N N 341 G N3 C4 sing N N 342 GLN N CA sing N N 343 GLN N H sing N N 344 GLN N H2 sing N N 345 GLN CA C sing N N 346 GLN CA CB sing N N 347 GLN CA HA sing N N 348 GLN C O doub N N 349 GLN C OXT sing N N 350 GLN CB CG sing N N 351 GLN CB HB2 sing N N 352 GLN CB HB3 sing N N 353 GLN CG CD sing N N 354 GLN CG HG2 sing N N 355 GLN CG HG3 sing N N 356 GLN CD OE1 doub N N 357 GLN CD NE2 sing N N 358 GLN NE2 HE21 sing N N 359 GLN NE2 HE22 sing N N 360 GLN OXT HXT sing N N 361 GLU N CA sing N N 362 GLU N H sing N N 363 GLU N H2 sing N N 364 GLU CA C sing N N 365 GLU CA CB sing N N 366 GLU CA HA sing N N 367 GLU C O doub N N 368 GLU C OXT sing N N 369 GLU CB CG sing N N 370 GLU CB HB2 sing N N 371 GLU CB HB3 sing N N 372 GLU CG CD sing N N 373 GLU CG HG2 sing N N 374 GLU CG HG3 sing N N 375 GLU CD OE1 doub N N 376 GLU CD OE2 sing N N 377 GLU OE2 HE2 sing N N 378 GLU OXT HXT sing N N 379 GLY N CA sing N N 380 GLY N H sing N N 381 GLY N H2 sing N N 382 GLY CA C sing N N 383 GLY CA HA2 sing N N 384 GLY CA HA3 sing N N 385 GLY C O doub N N 386 GLY C OXT sing N N 387 GLY OXT HXT sing N N 388 GOL C1 O1 sing N N 389 GOL C1 C2 sing N N 390 GOL C1 H11 sing N N 391 GOL C1 H12 sing N N 392 GOL O1 HO1 sing N N 393 GOL C2 O2 sing N N 394 GOL C2 C3 sing N N 395 GOL C2 H2 sing N N 396 GOL O2 HO2 sing N N 397 GOL C3 O3 sing N N 398 GOL C3 H31 sing N N 399 GOL C3 H32 sing N N 400 GOL O3 HO3 sing N N 401 HIS N CA sing N N 402 HIS N H sing N N 403 HIS N H2 sing N N 404 HIS CA C sing N N 405 HIS CA CB sing N N 406 HIS CA HA sing N N 407 HIS C O doub N N 408 HIS C OXT sing N N 409 HIS CB CG sing N N 410 HIS CB HB2 sing N N 411 HIS CB HB3 sing N N 412 HIS CG ND1 sing Y N 413 HIS CG CD2 doub Y N 414 HIS ND1 CE1 doub Y N 415 HIS ND1 HD1 sing N N 416 HIS CD2 NE2 sing Y N 417 HIS CD2 HD2 sing N N 418 HIS CE1 NE2 sing Y N 419 HIS CE1 HE1 sing N N 420 HIS NE2 HE2 sing N N 421 HIS OXT HXT sing N N 422 HOH O H1 sing N N 423 HOH O H2 sing N N 424 ILE N CA sing N N 425 ILE N H sing N N 426 ILE N H2 sing N N 427 ILE CA C sing N N 428 ILE CA CB sing N N 429 ILE CA HA sing N N 430 ILE C O doub N N 431 ILE C OXT sing N N 432 ILE CB CG1 sing N N 433 ILE CB CG2 sing N N 434 ILE CB HB sing N N 435 ILE CG1 CD1 sing N N 436 ILE CG1 HG12 sing N N 437 ILE CG1 HG13 sing N N 438 ILE CG2 HG21 sing N N 439 ILE CG2 HG22 sing N N 440 ILE CG2 HG23 sing N N 441 ILE CD1 HD11 sing N N 442 ILE CD1 HD12 sing N N 443 ILE CD1 HD13 sing N N 444 ILE OXT HXT sing N N 445 LEU N CA sing N N 446 LEU N H sing N N 447 LEU N H2 sing N N 448 LEU CA C sing N N 449 LEU CA CB sing N N 450 LEU CA HA sing N N 451 LEU C O doub N N 452 LEU C OXT sing N N 453 LEU CB CG sing N N 454 LEU CB HB2 sing N N 455 LEU CB HB3 sing N N 456 LEU CG CD1 sing N N 457 LEU CG CD2 sing N N 458 LEU CG HG sing N N 459 LEU CD1 HD11 sing N N 460 LEU CD1 HD12 sing N N 461 LEU CD1 HD13 sing N N 462 LEU CD2 HD21 sing N N 463 LEU CD2 HD22 sing N N 464 LEU CD2 HD23 sing N N 465 LEU OXT HXT sing N N 466 LYS N CA sing N N 467 LYS N H sing N N 468 LYS N H2 sing N N 469 LYS CA C sing N N 470 LYS CA CB sing N N 471 LYS CA HA sing N N 472 LYS C O doub N N 473 LYS C OXT sing N N 474 LYS CB CG sing N N 475 LYS CB HB2 sing N N 476 LYS CB HB3 sing N N 477 LYS CG CD sing N N 478 LYS CG HG2 sing N N 479 LYS CG HG3 sing N N 480 LYS CD CE sing N N 481 LYS CD HD2 sing N N 482 LYS CD HD3 sing N N 483 LYS CE NZ sing N N 484 LYS CE HE2 sing N N 485 LYS CE HE3 sing N N 486 LYS NZ HZ1 sing N N 487 LYS NZ HZ2 sing N N 488 LYS NZ HZ3 sing N N 489 LYS OXT HXT sing N N 490 MET N CA sing N N 491 MET N H sing N N 492 MET N H2 sing N N 493 MET CA C sing N N 494 MET CA CB sing N N 495 MET CA HA sing N N 496 MET C O doub N N 497 MET C OXT sing N N 498 MET CB CG sing N N 499 MET CB HB2 sing N N 500 MET CB HB3 sing N N 501 MET CG SD sing N N 502 MET CG HG2 sing N N 503 MET CG HG3 sing N N 504 MET SD CE sing N N 505 MET CE HE1 sing N N 506 MET CE HE2 sing N N 507 MET CE HE3 sing N N 508 MET OXT HXT sing N N 509 PHE N CA sing N N 510 PHE N H sing N N 511 PHE N H2 sing N N 512 PHE CA C sing N N 513 PHE CA CB sing N N 514 PHE CA HA sing N N 515 PHE C O doub N N 516 PHE C OXT sing N N 517 PHE CB CG sing N N 518 PHE CB HB2 sing N N 519 PHE CB HB3 sing N N 520 PHE CG CD1 doub Y N 521 PHE CG CD2 sing Y N 522 PHE CD1 CE1 sing Y N 523 PHE CD1 HD1 sing N N 524 PHE CD2 CE2 doub Y N 525 PHE CD2 HD2 sing N N 526 PHE CE1 CZ doub Y N 527 PHE CE1 HE1 sing N N 528 PHE CE2 CZ sing Y N 529 PHE CE2 HE2 sing N N 530 PHE CZ HZ sing N N 531 PHE OXT HXT sing N N 532 PRO N CA sing N N 533 PRO N CD sing N N 534 PRO N H sing N N 535 PRO CA C sing N N 536 PRO CA CB sing N N 537 PRO CA HA sing N N 538 PRO C O doub N N 539 PRO C OXT sing N N 540 PRO CB CG sing N N 541 PRO CB HB2 sing N N 542 PRO CB HB3 sing N N 543 PRO CG CD sing N N 544 PRO CG HG2 sing N N 545 PRO CG HG3 sing N N 546 PRO CD HD2 sing N N 547 PRO CD HD3 sing N N 548 PRO OXT HXT sing N N 549 SER N CA sing N N 550 SER N H sing N N 551 SER N H2 sing N N 552 SER CA C sing N N 553 SER CA CB sing N N 554 SER CA HA sing N N 555 SER C O doub N N 556 SER C OXT sing N N 557 SER CB OG sing N N 558 SER CB HB2 sing N N 559 SER CB HB3 sing N N 560 SER OG HG sing N N 561 SER OXT HXT sing N N 562 THR N CA sing N N 563 THR N H sing N N 564 THR N H2 sing N N 565 THR CA C sing N N 566 THR CA CB sing N N 567 THR CA HA sing N N 568 THR C O doub N N 569 THR C OXT sing N N 570 THR CB OG1 sing N N 571 THR CB CG2 sing N N 572 THR CB HB sing N N 573 THR OG1 HG1 sing N N 574 THR CG2 HG21 sing N N 575 THR CG2 HG22 sing N N 576 THR CG2 HG23 sing N N 577 THR OXT HXT sing N N 578 TRP N CA sing N N 579 TRP N H sing N N 580 TRP N H2 sing N N 581 TRP CA C sing N N 582 TRP CA CB sing N N 583 TRP CA HA sing N N 584 TRP C O doub N N 585 TRP C OXT sing N N 586 TRP CB CG sing N N 587 TRP CB HB2 sing N N 588 TRP CB HB3 sing N N 589 TRP CG CD1 doub Y N 590 TRP CG CD2 sing Y N 591 TRP CD1 NE1 sing Y N 592 TRP CD1 HD1 sing N N 593 TRP CD2 CE2 doub Y N 594 TRP CD2 CE3 sing Y N 595 TRP NE1 CE2 sing Y N 596 TRP NE1 HE1 sing N N 597 TRP CE2 CZ2 sing Y N 598 TRP CE3 CZ3 doub Y N 599 TRP CE3 HE3 sing N N 600 TRP CZ2 CH2 doub Y N 601 TRP CZ2 HZ2 sing N N 602 TRP CZ3 CH2 sing Y N 603 TRP CZ3 HZ3 sing N N 604 TRP CH2 HH2 sing N N 605 TRP OXT HXT sing N N 606 TYR N CA sing N N 607 TYR N H sing N N 608 TYR N H2 sing N N 609 TYR CA C sing N N 610 TYR CA CB sing N N 611 TYR CA HA sing N N 612 TYR C O doub N N 613 TYR C OXT sing N N 614 TYR CB CG sing N N 615 TYR CB HB2 sing N N 616 TYR CB HB3 sing N N 617 TYR CG CD1 doub Y N 618 TYR CG CD2 sing Y N 619 TYR CD1 CE1 sing Y N 620 TYR CD1 HD1 sing N N 621 TYR CD2 CE2 doub Y N 622 TYR CD2 HD2 sing N N 623 TYR CE1 CZ doub Y N 624 TYR CE1 HE1 sing N N 625 TYR CE2 CZ sing Y N 626 TYR CE2 HE2 sing N N 627 TYR CZ OH sing N N 628 TYR OH HH sing N N 629 TYR OXT HXT sing N N 630 U OP3 P sing N N 631 U OP3 HOP3 sing N N 632 U P OP1 doub N N 633 U P OP2 sing N N 634 U P "O5'" sing N N 635 U OP2 HOP2 sing N N 636 U "O5'" "C5'" sing N N 637 U "C5'" "C4'" sing N N 638 U "C5'" "H5'" sing N N 639 U "C5'" "H5''" sing N N 640 U "C4'" "O4'" sing N N 641 U "C4'" "C3'" sing N N 642 U "C4'" "H4'" sing N N 643 U "O4'" "C1'" sing N N 644 U "C3'" "O3'" sing N N 645 U "C3'" "C2'" sing N N 646 U "C3'" "H3'" sing N N 647 U "O3'" "HO3'" sing N N 648 U "C2'" "O2'" sing N N 649 U "C2'" "C1'" sing N N 650 U "C2'" "H2'" sing N N 651 U "O2'" "HO2'" sing N N 652 U "C1'" N1 sing N N 653 U "C1'" "H1'" sing N N 654 U N1 C2 sing N N 655 U N1 C6 sing N N 656 U C2 O2 doub N N 657 U C2 N3 sing N N 658 U N3 C4 sing N N 659 U N3 H3 sing N N 660 U C4 O4 doub N N 661 U C4 C5 sing N N 662 U C5 C6 doub N N 663 U C5 H5 sing N N 664 U C6 H6 sing N N 665 VAL N CA sing N N 666 VAL N H sing N N 667 VAL N H2 sing N N 668 VAL CA C sing N N 669 VAL CA CB sing N N 670 VAL CA HA sing N N 671 VAL C O doub N N 672 VAL C OXT sing N N 673 VAL CB CG1 sing N N 674 VAL CB CG2 sing N N 675 VAL CB HB sing N N 676 VAL CG1 HG11 sing N N 677 VAL CG1 HG12 sing N N 678 VAL CG1 HG13 sing N N 679 VAL CG2 HG21 sing N N 680 VAL CG2 HG22 sing N N 681 VAL CG2 HG23 sing N N 682 VAL OXT HXT sing N N 683 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6DPB 'double helix' 6DPB 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B A 1 1_555 D DT 6 1_555 0.283 -0.212 -0.011 -4.535 -5.914 -0.762 1 B_A1:DT6_C B 1 ? C 6 ? 20 1 1 B C 2 1_555 D DG 5 1_555 0.076 -0.192 0.005 3.856 -11.305 1.926 2 B_C2:DG5_C B 2 ? C 5 ? 19 1 1 B A 3 1_555 D DT 4 1_555 0.140 -0.141 -0.220 -7.085 -12.999 1.969 3 B_A3:DT4_C B 3 ? C 4 ? 20 1 1 B U 4 1_555 D DA 3 1_555 0.058 -0.207 -0.027 -5.879 -10.906 3.859 4 B_U4:DA3_C B 4 ? C 3 ? 20 1 1 C C 1 1_555 D DG 2 1_555 -0.016 -0.166 0.044 -13.596 -2.234 0.281 5 b_C5:DG2_C b 5 ? C 2 ? 19 1 1 C G 2 1_555 D DC 1 1_555 -0.223 -0.164 0.062 -4.498 -8.855 -1.010 6 b_G6:DC1_C b 6 ? C 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B A 1 1_555 D DT 6 1_555 B C 2 1_555 D DG 5 1_555 0.674 -1.059 3.184 -0.938 3.316 34.505 -2.263 -1.268 3.053 5.573 1.576 34.672 1 BB_A1C2:DG5DT6_CC B 1 ? C 6 ? B 2 ? C 5 ? 1 B C 2 1_555 D DG 5 1_555 B A 3 1_555 D DT 4 1_555 -0.323 -1.439 3.496 2.187 12.335 27.029 -5.324 1.076 2.575 24.772 -4.391 29.742 2 BB_C2A3:DT4DG5_CC B 2 ? C 5 ? B 3 ? C 4 ? 1 B A 3 1_555 D DT 4 1_555 B U 4 1_555 D DA 3 1_555 1.123 -2.108 3.370 3.373 2.464 25.150 -5.499 -1.559 3.272 5.609 -7.678 25.489 3 BB_A3U4:DA3DT4_CC B 3 ? C 4 ? B 4 ? C 3 ? 1 B U 4 1_555 D DA 3 1_555 C C 1 1_555 D DG 2 1_555 0.147 -1.560 3.482 4.367 4.352 34.744 -3.246 0.430 3.262 7.218 -7.243 35.270 4 Bb_U4C5:DG2DA3_CC B 4 ? C 3 ? b 5 ? C 2 ? 1 C C 1 1_555 D DG 2 1_555 C G 2 1_555 D DC 1 1_555 1.025 -1.913 3.160 3.904 8.200 20.202 -7.740 -1.358 2.365 21.997 -10.474 22.130 5 bb_C5G6:DC1DG2_CC b 5 ? C 2 ? b 6 ? C 1 ? # _pdbx_deposit_group.group_id G_1001001 _pdbx_deposit_group.group_description ;The structures represent different time points in the divalent and monovalent metal-dependent hydrolysis reaction of RNA by Ribonuclease H1, which is bound to an RNA/DNA hybrid in the crystal. ; _pdbx_deposit_group.group_title 'Cleavage of RNA by B. Halodurans Ribonuclease H1' _pdbx_deposit_group.group_type undefined # loop_ _pdbx_entity_instance_feature.ordinal _pdbx_entity_instance_feature.comp_id _pdbx_entity_instance_feature.asym_id _pdbx_entity_instance_feature.seq_num _pdbx_entity_instance_feature.auth_comp_id _pdbx_entity_instance_feature.auth_asym_id _pdbx_entity_instance_feature.auth_seq_num _pdbx_entity_instance_feature.feature_type _pdbx_entity_instance_feature.details 1 K ? ? K ? ? 'SUBJECT OF INVESTIGATION' ? 2 MN ? ? MN ? ? 'SUBJECT OF INVESTIGATION' ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 5 'MANGANESE (II) ION' MN 6 'POTASSIUM ION' K 7 'IODIDE ION' IOD 8 GLYCEROL GOL 9 1,2-ETHANEDIOL EDO 10 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ZBL _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #