HEADER DE NOVO PROTEIN 11-JUN-18 6DR4 TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COVALENT TRIMER DERIVED FROM A- TITLE 2 BETA 17_36 CONTAINING THE I31V POINT MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORN-CYS-VAL-PHE-MEA-CYS-GLU-ASP-ORN-ALA-VAL-ILE-GLY-LEU- COMPND 3 ORN-VAL; COMPND 4 CHAIN: A, C, B, D; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, ALZHEIMERS DISEASE, ABETA, OLIGOMER, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.SALVESON,J.S.NOWICK REVDAT 2 01-JAN-20 6DR4 1 REMARK REVDAT 1 17-OCT-18 6DR4 0 JRNL AUTH P.J.SALVESON,S.HAERIANARDAKANI,A.THUY-BOUN,S.YOO, JRNL AUTH 2 A.G.KREUTZER,B.DEMELER,J.S.NOWICK JRNL TITL REPURPOSING TRIPHENYLMETHANE DYES TO BIND TO TRIMERS DERIVED JRNL TITL 2 FROM A BETA. JRNL REF J. AM. CHEM. SOC. V. 140 11745 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 30125493 JRNL DOI 10.1021/JACS.8B06568 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5880 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.130 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.5931 - 4.0227 1.00 1325 151 0.1925 0.1967 REMARK 3 2 4.0227 - 3.1945 1.00 1305 152 0.2133 0.2959 REMARK 3 3 3.1945 - 2.7911 1.00 1325 146 0.2326 0.2708 REMARK 3 4 2.7911 - 2.5361 1.00 1299 149 0.3041 0.3172 REMARK 3 5 2.5361 - 2.3544 1.00 1322 149 0.2870 0.4084 REMARK 3 6 2.3544 - 2.2157 1.00 1300 140 0.2684 0.3378 REMARK 3 7 2.2157 - 2.1048 1.00 1336 151 0.2922 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 520 REMARK 3 ANGLE : 1.201 680 REMARK 3 CHIRALITY : 0.141 80 REMARK 3 PLANARITY : 0.004 80 REMARK 3 DIHEDRAL : 26.373 364 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9308 19.6745 40.7929 REMARK 3 T TENSOR REMARK 3 T11: 0.6326 T22: 0.3638 REMARK 3 T33: 0.5196 T12: -0.0788 REMARK 3 T13: -0.0581 T23: 0.0453 REMARK 3 L TENSOR REMARK 3 L11: 4.8294 L22: 5.8610 REMARK 3 L33: 2.2729 L12: -3.9721 REMARK 3 L13: 2.1744 L23: -0.0614 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: -0.3408 S13: -0.7244 REMARK 3 S21: 0.4402 S22: 0.1386 S23: 0.0374 REMARK 3 S31: 0.3847 S32: -0.0573 S33: -0.2362 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.6365 29.6993 40.3148 REMARK 3 T TENSOR REMARK 3 T11: 0.4461 T22: 0.3841 REMARK 3 T33: 0.5111 T12: 0.0351 REMARK 3 T13: -0.0774 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 6.9146 L22: 9.8053 REMARK 3 L33: 3.2206 L12: 4.8621 REMARK 3 L13: 0.8918 L23: 2.1619 REMARK 3 S TENSOR REMARK 3 S11: 0.0868 S12: 0.2337 S13: -0.8454 REMARK 3 S21: -0.4009 S22: -0.6527 S23: -0.0539 REMARK 3 S31: 0.4323 S32: 0.1239 S33: 0.3485 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0080 27.8039 52.0909 REMARK 3 T TENSOR REMARK 3 T11: 0.3685 T22: 0.4294 REMARK 3 T33: 0.3622 T12: 0.0015 REMARK 3 T13: -0.0939 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 3.4549 L22: 9.2607 REMARK 3 L33: 9.0789 L12: 0.1565 REMARK 3 L13: -0.2064 L23: -1.1466 REMARK 3 S TENSOR REMARK 3 S11: -0.1461 S12: -0.7964 S13: 0.7657 REMARK 3 S21: 0.5376 S22: 0.3204 S23: -0.0749 REMARK 3 S31: 0.5569 S32: -0.2868 S33: -0.0091 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3772 25.4076 28.8479 REMARK 3 T TENSOR REMARK 3 T11: 0.5528 T22: 0.3921 REMARK 3 T33: 0.5113 T12: -0.0703 REMARK 3 T13: -0.0047 T23: 0.0499 REMARK 3 L TENSOR REMARK 3 L11: 8.3777 L22: 7.7066 REMARK 3 L33: 7.9929 L12: -1.0333 REMARK 3 L13: -3.6703 L23: 0.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.4610 S12: -0.1626 S13: -0.7516 REMARK 3 S21: -0.2771 S22: 0.1257 S23: 1.0012 REMARK 3 S31: 1.0018 S32: -0.4433 S33: 0.4095 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DR4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAY-18 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5880 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 47.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 35.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TIRS PH 9.0, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 2.7 M 1,6-HEXANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.34150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.34150 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.34150 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.34150 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.34150 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.34150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HN3 ORN C 15 O HOH C 101 1.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 204 O HOH B 204 7556 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEZ B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 1 and VAL B 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 1 and CYS B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE B 4 and MEA B 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA B 5 and CYS B 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP B 8 and ORN B 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 9 and ALA B 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU B 14 and ORN B REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN B 15 and VAL B REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 1 and CYS C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 1 and VAL C 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE C 4 and MEA C 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA C 5 and CYS C 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP C 8 and ORN C 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 9 and ALA C 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU C 14 and ORN C REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN C 15 and VAL C REMARK 800 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 1 and CYS D 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 1 and VAL D 16 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide PHE D 4 and MEA D 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MEA D 5 and CYS D 6 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ASP D 8 and ORN D 9 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 9 and ALA D 10 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide LEU D 14 and ORN D REMARK 800 15 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide ORN D 15 and VAL D REMARK 800 16 DBREF 6DR4 A 1 16 PDB 6DR4 6DR4 1 16 DBREF 6DR4 C 1 16 PDB 6DR4 6DR4 1 16 DBREF 6DR4 B 1 16 PDB 6DR4 6DR4 1 16 DBREF 6DR4 D 1 16 PDB 6DR4 6DR4 1 16 SEQRES 1 A 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA VAL ILE GLY SEQRES 2 A 16 LEU ORN VAL SEQRES 1 C 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA VAL ILE GLY SEQRES 2 C 16 LEU ORN VAL SEQRES 1 B 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA VAL ILE GLY SEQRES 2 B 16 LEU ORN VAL SEQRES 1 D 16 ORN CYS VAL PHE MEA CYS GLU ASP ORN ALA VAL ILE GLY SEQRES 2 D 16 LEU ORN VAL HET ORN A 1 19 HET MEA A 5 23 HET ORN A 9 17 HET ORN A 15 19 HET ORN C 1 19 HET MEA C 5 23 HET ORN C 9 17 HET ORN C 15 19 HET ORN B 1 19 HET MEA B 5 23 HET ORN B 9 17 HET ORN B 15 19 HET ORN D 1 19 HET MEA D 5 23 HET ORN D 9 17 HET ORN D 15 19 HET HEZ B 101 22 HET HEZ B 102 22 HET HEZ B 103 22 HETNAM ORN L-ORNITHINE HETNAM MEA N-METHYLPHENYLALANINE HETNAM HEZ HEXANE-1,6-DIOL FORMUL 1 ORN 12(C5 H12 N2 O2) FORMUL 1 MEA 4(C10 H13 N O2) FORMUL 5 HEZ 3(C6 H14 O2) FORMUL 8 HOH *20(H2 O) SHEET 1 AA1 6 CYS D 2 GLU D 7 0 SHEET 2 AA1 6 VAL D 11 VAL D 16 -1 O VAL D 16 N CYS D 2 SHEET 3 AA1 6 ALA A 10 VAL A 16 -1 N VAL A 11 O GLY D 13 SHEET 4 AA1 6 CYS A 2 CYS A 6 -1 N CYS A 2 O VAL A 16 SHEET 5 AA1 6 CYS C 2 GLU C 7 -1 O MEA C 5 N VAL A 3 SHEET 6 AA1 6 VAL C 11 VAL C 16 -1 O VAL C 16 N CYS C 2 SHEET 1 AA2 4 VAL C 11 VAL C 16 0 SHEET 2 AA2 4 CYS C 2 GLU C 7 -1 N CYS C 2 O VAL C 16 SHEET 3 AA2 4 CYS B 2 GLU B 7 -1 O MEA B 5 N VAL C 3 SHEET 4 AA2 4 VAL B 11 VAL B 16 -1 O ILE B 12 N CYS B 6 SHEET 1 AA3 6 VAL B 11 VAL B 16 0 SHEET 2 AA3 6 CYS B 2 GLU B 7 -1 N CYS B 6 O ILE B 12 SHEET 3 AA3 6 CYS A 2 CYS A 6 -1 N MEA A 5 O VAL B 3 SHEET 4 AA3 6 ALA A 10 VAL A 16 -1 O VAL A 16 N CYS A 2 SHEET 5 AA3 6 VAL D 11 VAL D 16 -1 O GLY D 13 N VAL A 11 SHEET 6 AA3 6 CYS D 2 GLU D 7 -1 N CYS D 2 O VAL D 16 SSBOND 1 CYS A 2 CYS C 6 1555 1555 2.04 SSBOND 2 CYS A 6 CYS B 2 1555 1555 2.03 SSBOND 3 CYS C 2 CYS B 6 1555 1555 2.03 SSBOND 4 CYS D 2 CYS D 6 1555 2665 2.04 LINK NE ORN A 1 C VAL A 16 1555 1555 1.37 LINK C ORN A 1 N CYS A 2 1555 1555 1.37 LINK C PHE A 4 N MEA A 5 1555 1555 1.33 LINK C MEA A 5 N CYS A 6 1555 1555 1.33 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK C LEU A 14 N ORN A 15 1555 1555 1.34 LINK C ORN A 15 N VAL A 16 1555 1555 1.33 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C ORN C 1 N CYS C 2 1555 1555 1.37 LINK C PHE C 4 N MEA C 5 1555 1555 1.34 LINK C MEA C 5 N CYS C 6 1555 1555 1.33 LINK C ASP C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 LINK C LEU C 14 N ORN C 15 1555 1555 1.34 LINK C ORN C 15 N VAL C 16 1555 1555 1.33 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C ORN B 1 N CYS B 2 1555 1555 1.38 LINK C PHE B 4 N MEA B 5 1555 1555 1.33 LINK C MEA B 5 N CYS B 6 1555 1555 1.33 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK C LEU B 14 N ORN B 15 1555 1555 1.33 LINK C ORN B 15 N VAL B 16 1555 1555 1.33 LINK NE ORN D 1 C VAL D 16 1555 1555 1.37 LINK C ORN D 1 N CYS D 2 1555 1555 1.37 LINK C PHE D 4 N MEA D 5 1555 1555 1.33 LINK C MEA D 5 N CYS D 6 1555 1555 1.34 LINK C ASP D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N ALA D 10 1555 1555 1.37 LINK C LEU D 14 N ORN D 15 1555 1555 1.33 LINK C ORN D 15 N VAL D 16 1555 1555 1.33 SITE 1 AC1 7 GLU A 7 VAL B 3 ORN B 15 ORN D 1 SITE 2 AC1 7 VAL D 3 GLU D 7 ORN D 15 SITE 1 AC2 8 ORN A 1 VAL A 3 ORN A 15 GLU B 7 SITE 2 AC2 8 ORN C 1 VAL C 3 GLU C 7 ORN C 15 SITE 1 AC3 2 VAL B 16 HOH B 202 SITE 1 AC4 7 CYS A 6 GLU A 7 CYS B 2 LEU B 14 SITE 2 AC4 7 ORN B 15 HEZ B 103 VAL C 16 SITE 1 AC5 7 MEA A 5 CYS A 6 GLU A 7 VAL B 3 SITE 2 AC5 7 LEU B 14 ORN B 15 VAL B 16 SITE 1 AC6 7 VAL B 3 CYS B 6 ILE B 12 GLY B 13 SITE 2 AC6 7 LEU B 14 CYS C 2 VAL C 3 SITE 1 AC7 8 PHE B 4 GLU B 7 VAL B 11 ILE B 12 SITE 2 AC7 8 ORN C 1 CYS C 2 VAL C 3 VAL C 16 SITE 1 AC8 5 GLU B 7 ALA B 10 VAL B 11 HOH B 201 SITE 2 AC8 5 HOH C 101 SITE 1 AC9 5 ILE A 12 GLY A 13 GLU B 7 ASP B 8 SITE 2 AC9 5 VAL B 11 SITE 1 AD1 12 HOH A 103 CYS B 2 VAL B 3 PHE B 4 SITE 2 AD1 12 ILE B 12 GLY B 13 VAL B 16 HEZ B 101 SITE 3 AD1 12 ORN C 1 VAL C 16 GLU D 7 ORN D 9 SITE 1 AD2 9 HOH A 103 ORN B 1 CYS B 2 LEU B 14 SITE 2 AD2 9 HEZ B 101 HEZ B 103 VAL C 16 GLU D 7 SITE 3 AD2 9 ORN D 9 SITE 1 AD3 10 MEA B 5 CYS B 6 GLU B 7 LEU B 14 SITE 2 AD3 10 HEZ B 102 VAL C 3 LEU C 14 ORN C 15 SITE 3 AD3 10 VAL C 16 HOH C 104 SITE 1 AD4 10 CYS B 6 GLU B 7 LEU B 14 VAL B 16 SITE 2 AD4 10 HEZ B 102 CYS C 2 PHE C 4 LEU C 14 SITE 3 AD4 10 ORN C 15 HOH C 104 SITE 1 AD5 8 CYS A 2 VAL A 3 VAL C 3 CYS C 6 SITE 2 AD5 8 ILE C 12 GLY C 13 LEU C 14 VAL C 16 SITE 1 AD6 8 ORN A 1 CYS A 2 VAL A 3 PHE C 4 SITE 2 AD6 8 GLU C 7 VAL C 11 ILE C 12 GLY C 13 SITE 1 AD7 5 GLU C 7 ALA C 10 VAL C 11 ORN C 15 SITE 2 AD7 5 HOH C 103 SITE 1 AD8 8 GLU C 7 ASP C 8 VAL C 11 ILE C 12 SITE 2 AD8 8 GLY C 13 ORN C 15 HOH C 103 HOH C 105 SITE 1 AD9 12 HEZ B 102 HOH B 201 ORN C 1 CYS C 2 SITE 2 AD9 12 VAL C 3 PHE C 4 GLU C 7 ORN C 9 SITE 3 AD9 12 ILE C 12 GLY C 13 VAL C 16 HOH C 101 SITE 1 AE1 12 CYS B 6 LEU B 14 VAL B 16 HEZ B 102 SITE 2 AE1 12 HOH B 201 ORN C 1 CYS C 2 PHE C 4 SITE 3 AE1 12 GLU C 7 ORN C 9 LEU C 14 HOH C 101 SITE 1 AE2 9 HEZ B 101 VAL D 3 PHE D 4 MEA D 5 SITE 2 AE2 9 CYS D 6 GLU D 7 LEU D 14 ORN D 15 SITE 3 AE2 9 VAL D 16 SITE 1 AE3 6 HEZ B 101 CYS D 2 CYS D 6 GLU D 7 SITE 2 AE3 6 LEU D 14 ORN D 15 SITE 1 AE4 6 CYS D 2 VAL D 3 CYS D 6 ILE D 12 SITE 2 AE4 6 GLY D 13 LEU D 14 SITE 1 AE5 10 ORN D 1 CYS D 2 VAL D 3 PHE D 4 SITE 2 AE5 10 GLU D 7 ALA D 10 VAL D 11 ILE D 12 SITE 3 AE5 10 GLY D 13 VAL D 16 SITE 1 AE6 5 ORN B 15 GLU D 7 ALA D 10 VAL D 11 SITE 2 AE6 5 HOH D 102 SITE 1 AE7 8 GLY B 13 ORN B 15 CYS D 6 GLU D 7 SITE 2 AE7 8 ASP D 8 VAL D 11 HOH D 102 HOH D 103 SITE 1 AE8 10 ORN A 9 HOH A 103 HEZ B 101 CYS D 2 SITE 2 AE8 10 VAL D 3 PHE D 4 ILE D 12 GLY D 13 SITE 3 AE8 10 VAL D 16 HOH D 101 SITE 1 AE9 8 ORN A 9 HOH A 103 HEZ B 101 ORN D 1 SITE 2 AE9 8 CYS D 2 CYS D 6 LEU D 14 HOH D 101 CRYST1 57.685 57.685 94.683 90.00 90.00 120.00 P 63 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017336 0.010009 0.000000 0.00000 SCALE2 0.000000 0.020017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010562 0.00000 HETATM 1 N ORN A 1 2.599 19.641 54.082 1.00 65.45 N ANISOU 1 N ORN A 1 11525 8090 5254 1268 -73 2453 N HETATM 2 CA ORN A 1 3.367 19.400 52.836 1.00 61.57 C ANISOU 2 CA ORN A 1 10802 7308 5283 912 -318 2165 C HETATM 3 CB ORN A 1 2.706 18.292 52.018 1.00 61.04 C ANISOU 3 CB ORN A 1 10493 7044 5657 536 -92 2449 C HETATM 4 CG ORN A 1 2.847 16.901 52.651 1.00 64.50 C ANISOU 4 CG ORN A 1 11072 7317 6118 584 -42 2855 C HETATM 5 CD ORN A 1 4.046 16.101 52.106 1.00 63.23 C ANISOU 5 CD ORN A 1 10902 6847 6276 474 -389 2664 C HETATM 6 NE ORN A 1 4.024 16.017 50.658 1.00 59.71 N ANISOU 6 NE ORN A 1 10149 6229 6308 128 -453 2429 N HETATM 7 C ORN A 1 3.456 20.667 51.973 1.00 66.21 C ANISOU 7 C ORN A 1 11205 7941 6010 787 -447 1740 C HETATM 8 O ORN A 1 2.870 21.706 52.278 1.00 58.08 O ANISOU 8 O ORN A 1 10210 7135 4724 936 -371 1651 O HETATM 9 H1 ORN A 1 2.853 20.513 54.552 1.00 78.47 H HETATM 10 H2 ORN A 1 1.589 19.700 53.929 1.00 78.47 H HETATM 11 H3 ORN A 1 2.724 18.907 54.783 1.00 78.47 H HETATM 12 HA ORN A 1 4.382 19.142 53.154 1.00 73.79 H HETATM 13 HB2 ORN A 1 1.638 18.512 51.882 1.00 73.16 H HETATM 14 HB3 ORN A 1 3.213 18.253 51.043 1.00 73.16 H HETATM 15 HG2 ORN A 1 1.930 16.332 52.461 1.00 77.30 H HETATM 16 HG3 ORN A 1 2.965 17.021 53.734 1.00 77.30 H HETATM 17 HD2 ORN A 1 4.971 16.596 52.417 1.00 75.78 H HETATM 18 HD3 ORN A 1 3.998 15.085 52.510 1.00 75.78 H HETATM 19 HE1 ORN A 1 3.402 15.315 50.260 1.00 71.55 H