HEADER DE NOVO PROTEIN 11-JUN-18 6DR6 TITLE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A COVALENT TRIMER DERIVED FROM A- TITLE 2 BETA 17_36 CONTAINING THE F20CHA POINT MUTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORT-CYS-VAL-PHE-XXX-CYS-GLU-ASP-ORT-ALA-ILE-ILE-GLY-LEU- COMPND 3 ORA-VAL; COMPND 4 CHAIN: A, D, B, C; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606 KEYWDS AMYLOID, ALZHEIMERS DISEASE, ABETA, OLIGOMER, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.SALVESON,J.S.NOWICK REVDAT 2 01-JAN-20 6DR6 1 SEQRES REVDAT 1 17-OCT-18 6DR6 0 JRNL AUTH P.J.SALVESON,S.HAERIANARDAKANI,A.THUY-BOUN,S.YOO, JRNL AUTH 2 A.G.KREUTZER,B.DEMELER,J.S.NOWICK JRNL TITL REPURPOSING TRIPHENYLMETHANE DYES TO BIND TO TRIMERS DERIVED JRNL TITL 2 FROM A BETA. JRNL REF J. AM. CHEM. SOC. V. 140 11745 2018 JRNL REFN ESSN 1520-5126 JRNL PMID 30125493 JRNL DOI 10.1021/JACS.8B06568 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.160 REMARK 3 FREE R VALUE TEST SET COUNT : 561 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.6479 - 4.1380 1.00 1247 140 0.2029 0.2310 REMARK 3 2 4.1380 - 3.2853 1.00 1237 138 0.2566 0.3027 REMARK 3 3 3.2853 - 2.8702 1.00 1241 141 0.2890 0.3154 REMARK 3 4 2.8702 - 2.6079 1.00 1234 142 0.3189 0.3812 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 503 REMARK 3 ANGLE : 1.283 666 REMARK 3 CHIRALITY : 0.206 84 REMARK 3 PLANARITY : 0.002 76 REMARK 3 DIHEDRAL : 31.985 369 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.6778 20.1117 41.3767 REMARK 3 T TENSOR REMARK 3 T11: 0.5436 T22: 0.6089 REMARK 3 T33: 0.7014 T12: 0.0260 REMARK 3 T13: 0.1000 T23: -0.0512 REMARK 3 L TENSOR REMARK 3 L11: 5.4587 L22: 5.5174 REMARK 3 L33: 2.0652 L12: -0.5376 REMARK 3 L13: 1.0799 L23: -1.0899 REMARK 3 S TENSOR REMARK 3 S11: -0.3024 S12: 0.5970 S13: -0.6766 REMARK 3 S21: 0.3505 S22: -0.1926 S23: 0.2339 REMARK 3 S31: 0.3289 S32: 0.7588 S33: 0.5239 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.1073 28.3756 52.6788 REMARK 3 T TENSOR REMARK 3 T11: 0.3430 T22: 0.6832 REMARK 3 T33: 0.4100 T12: 0.0584 REMARK 3 T13: -0.0780 T23: 0.0865 REMARK 3 L TENSOR REMARK 3 L11: 2.5061 L22: 4.6567 REMARK 3 L33: 1.3967 L12: 0.8291 REMARK 3 L13: -0.0033 L23: 0.1137 REMARK 3 S TENSOR REMARK 3 S11: -0.0359 S12: -1.0527 S13: -0.2948 REMARK 3 S21: 0.1062 S22: -0.2024 S23: -0.2985 REMARK 3 S31: -0.2570 S32: -0.1579 S33: 0.2266 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7091 29.9323 40.9557 REMARK 3 T TENSOR REMARK 3 T11: 0.5049 T22: 0.6961 REMARK 3 T33: 0.7204 T12: 0.0785 REMARK 3 T13: 0.0457 T23: -0.0447 REMARK 3 L TENSOR REMARK 3 L11: 5.9713 L22: 9.6260 REMARK 3 L33: 4.3891 L12: 1.1456 REMARK 3 L13: -0.1143 L23: -0.9320 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.6267 S13: -0.1396 REMARK 3 S21: -0.0675 S22: 0.1153 S23: -0.5320 REMARK 3 S31: 0.4301 S32: 0.2419 S33: -0.0335 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8332 25.4727 29.9952 REMARK 3 T TENSOR REMARK 3 T11: 0.8368 T22: 0.8100 REMARK 3 T33: 0.4889 T12: -0.1088 REMARK 3 T13: 0.1019 T23: -0.0758 REMARK 3 L TENSOR REMARK 3 L11: 4.8999 L22: 3.2044 REMARK 3 L33: 3.5510 L12: 2.3742 REMARK 3 L13: -3.7234 L23: -3.0092 REMARK 3 S TENSOR REMARK 3 S11: 0.2781 S12: -0.1771 S13: -0.0435 REMARK 3 S21: -0.9652 S22: -0.7601 S23: -0.5318 REMARK 3 S31: 0.3844 S32: 0.4984 S33: 0.3424 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DR6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 92 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5520 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.608 REMARK 200 RESOLUTION RANGE LOW (A) : 34.645 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 75.40 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 57.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.72 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 7.5, ).2 M MAGNESIUM REMARK 280 CHLORIDE, 3.9 M 1,6-HEXANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 296.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.80450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.80450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.80450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.80450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.80450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.80450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 95.60900 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 29.02900 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 50.27970 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -29.02900 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 50.27970 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 29.02900 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 50.27970 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 47.80450 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 47.80450 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -29.02900 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 50.27970 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 47.80450 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 8 O HOH C 101 2.00 REMARK 500 OD1 ASP D 8 O HOH D 101 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 16 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 VAL C 16 C - N - CA ANGL. DEV. = 15.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 10 112.33 -172.54 REMARK 500 REMARK 500 REMARK: NULL DBREF 6DR6 A 1 16 PDB 6DR6 6DR6 1 16 DBREF 6DR6 D 1 16 PDB 6DR6 6DR6 1 16 DBREF 6DR6 B 1 16 PDB 6DR6 6DR6 1 16 DBREF 6DR6 C 1 16 PDB 6DR6 6DR6 1 16 SEQRES 1 A 16 ORN CYS VAL PHE H7V CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 A 16 LEU ORN VAL SEQRES 1 D 16 ORN CYS VAL PHE H7V CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 D 16 LEU ORN VAL SEQRES 1 B 16 ORN CYS VAL PHE H7V CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 B 16 LEU ORN VAL SEQRES 1 C 16 ORN CYS VAL PHE H7V CYS GLU ASP ORN ALA ILE ILE GLY SEQRES 2 C 16 LEU ORN VAL HET ORN A 1 19 HET H7V A 5 29 HET ORN A 9 17 HET ORN A 15 19 HET ORN D 1 19 HET H7V D 5 29 HET ORN D 9 17 HET ORN D 15 19 HET ORN B 1 19 HET H7V B 5 29 HET ORN B 9 17 HET ORN B 15 19 HET ORN C 1 19 HET H7V C 5 29 HET ORN C 9 17 HET ORN C 15 19 HETNAM ORN L-ORNITHINE HETNAM H7V 3-CYCLOHEXYL-N-METHYL-L-ALANINE FORMUL 1 ORN 12(C5 H12 N2 O2) FORMUL 1 H7V 4(C10 H19 N O2) FORMUL 5 HOH *7(H2 O) SHEET 1 AA1 4 ILE A 11 VAL A 16 0 SHEET 2 AA1 4 CYS A 2 GLU A 7 -1 N CYS A 6 O ILE A 12 SHEET 3 AA1 4 CYS B 2 GLU B 7 -1 O H7V B 5 N VAL A 3 SHEET 4 AA1 4 ILE B 11 VAL B 16 -1 O LEU B 14 N PHE B 4 SHEET 1 AA2 4 ILE A 11 VAL A 16 0 SHEET 2 AA2 4 CYS A 2 GLU A 7 -1 N CYS A 6 O ILE A 12 SHEET 3 AA2 4 CYS C 2 GLU C 7 -1 O VAL C 3 N H7V A 5 SHEET 4 AA2 4 ILE C 11 VAL C 16 -1 O ILE C 12 N CYS C 6 SHEET 1 AA3 4 ILE B 11 VAL B 16 0 SHEET 2 AA3 4 CYS B 2 GLU B 7 -1 N PHE B 4 O LEU B 14 SHEET 3 AA3 4 CYS C 2 GLU C 7 -1 O H7V C 5 N VAL B 3 SHEET 4 AA3 4 ILE C 11 VAL C 16 -1 O ILE C 12 N CYS C 6 SHEET 1 AA4 2 VAL D 3 GLU D 7 0 SHEET 2 AA4 2 ILE D 11 ORN D 15 -1 O ILE D 12 N CYS D 6 SSBOND 1 CYS A 2 CYS B 6 1555 1555 2.03 SSBOND 2 CYS A 6 CYS C 2 1555 1555 2.03 SSBOND 3 CYS B 2 CYS C 6 1555 1555 2.03 SSBOND 4 CYS D 2 CYS D 6 1555 2665 2.03 LINK NE ORN A 1 C VAL A 16 1555 1555 1.38 LINK C ORN A 1 N CYS A 2 1555 1555 1.37 LINK C PHE A 4 N H7V A 5 1555 1555 1.33 LINK C H7V A 5 N CYS A 6 1555 1555 1.33 LINK C ASP A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N ALA A 10 1555 1555 1.37 LINK C LEU A 14 N ORN A 15 1555 1555 1.33 LINK C ORN A 15 N VAL A 16 1555 1555 1.33 LINK NE ORN D 1 C VAL D 16 1555 1555 1.38 LINK C ORN D 1 N CYS D 2 1555 1555 1.37 LINK C PHE D 4 N H7V D 5 1555 1555 1.33 LINK C H7V D 5 N CYS D 6 1555 1555 1.33 LINK C ASP D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N ALA D 10 1555 1555 1.38 LINK C LEU D 14 N ORN D 15 1555 1555 1.33 LINK C ORN D 15 N VAL D 16 1555 1555 1.33 LINK NE ORN B 1 C VAL B 16 1555 1555 1.38 LINK C ORN B 1 N CYS B 2 1555 1555 1.37 LINK C PHE B 4 N H7V B 5 1555 1555 1.34 LINK C H7V B 5 N CYS B 6 1555 1555 1.33 LINK C ASP B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N ALA B 10 1555 1555 1.37 LINK C LEU B 14 N ORN B 15 1555 1555 1.33 LINK C ORN B 15 N VAL B 16 1555 1555 1.33 LINK NE ORN C 1 C VAL C 16 1555 1555 1.38 LINK C ORN C 1 N CYS C 2 1555 1555 1.37 LINK C PHE C 4 N H7V C 5 1555 1555 1.33 LINK C H7V C 5 N CYS C 6 1555 1555 1.33 LINK C ASP C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N ALA C 10 1555 1555 1.37 LINK C LEU C 14 N ORN C 15 1555 1555 1.33 LINK C ORN C 15 N VAL C 16 1555 1555 1.33 CRYST1 58.058 58.058 95.609 90.00 90.00 120.00 P 63 2 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017224 0.009944 0.000000 0.00000 SCALE2 0.000000 0.019889 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010459 0.00000 HETATM 1 N ORN A 1 2.589 20.047 54.576 1.00 60.98 N ANISOU 1 N ORN A 1 9981 6049 7139 789 1857 951 N HETATM 2 CA ORN A 1 3.479 19.845 53.403 1.00 58.94 C ANISOU 2 CA ORN A 1 9348 5951 7096 748 1585 914 C HETATM 3 CB ORN A 1 2.960 18.698 52.518 1.00 58.18 C ANISOU 3 CB ORN A 1 8956 5697 7452 791 1846 850 C HETATM 4 CG ORN A 1 3.061 17.305 53.164 1.00 60.71 C ANISOU 4 CG ORN A 1 9366 5830 7871 954 2054 1082 C HETATM 5 CD ORN A 1 4.208 16.415 52.604 1.00 63.70 C ANISOU 5 CD ORN A 1 9504 6289 8411 1058 1870 1167 C HETATM 6 NE ORN A 1 4.229 16.366 51.141 1.00 61.94 N ANISOU 6 NE ORN A 1 8905 6148 8481 1006 1816 911 N HETATM 7 C ORN A 1 3.577 21.131 52.556 1.00 56.55 C ANISOU 7 C ORN A 1 8869 5818 6799 580 1318 714 C HETATM 8 O ORN A 1 2.968 22.160 52.856 1.00 58.01 O ANISOU 8 O ORN A 1 9209 5963 6868 497 1316 591 O HETATM 9 H1 ORN A 1 2.757 20.930 55.064 1.00 72.46 H HETATM 10 H2 ORN A 1 1.595 20.056 54.332 1.00 72.46 H HETATM 11 H3 ORN A 1 2.687 19.319 55.288 1.00 72.46 H HETATM 12 HA ORN A 1 4.473 19.642 53.813 1.00 70.01 H HETATM 13 HB2 ORN A 1 1.910 18.881 52.251 1.00 69.10 H HETATM 14 HB3 ORN A 1 3.582 18.673 51.612 1.00 69.10 H HETATM 15 HG2 ORN A 1 3.223 17.438 54.239 1.00 72.13 H HETATM 16 HG3 ORN A 1 2.110 16.780 53.018 1.00 72.13 H HETATM 17 HD2 ORN A 1 4.064 15.396 52.977 1.00 76.59 H HETATM 18 HD3 ORN A 1 5.162 16.817 52.955 1.00 76.59 H HETATM 19 HE1 ORN A 1 3.607 15.686 50.709 1.00 74.47 H