HEADER MEMBRANE PROTEIN 13-JUN-18 6DRZ TITLE STRUCTURAL DETERMINANTS OF ACTIVATION AND BIASED AGONISM AT THE 5-HT2B TITLE 2 RECEPTOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5HT2B RECEPTOR, BRIL CHIMERA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 5-HT2B,SEROTONIN RECEPTOR 2B,CYTOCHROME B-562; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ESCHERICHIA COLI; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 562; SOURCE 5 GENE: HTR2B, CYBC; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS GPCR, 5HT2B, SETOTONIN RECEPTOR, METHYSERGIDE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.D.MCCORVY,D.WACKER,S.WANG,B.AGEGNEHU,J.LIU,K.LANSU,A.R.TRIBO, AUTHOR 2 R.H.J.OLSEN,T.CHE,J.JIN,B.L.ROTH REVDAT 6 20-NOV-24 6DRZ 1 REMARK REVDAT 5 11-OCT-23 6DRZ 1 REMARK REVDAT 4 04-DEC-19 6DRZ 1 REMARK REVDAT 3 19-SEP-18 6DRZ 1 JRNL REVDAT 2 05-SEP-18 6DRZ 1 JRNL REVDAT 1 29-AUG-18 6DRZ 0 JRNL AUTH J.D.MCCORVY,D.WACKER,S.WANG,B.AGEGNEHU,J.LIU,K.LANSU, JRNL AUTH 2 A.R.TRIBO,R.H.J.OLSEN,T.CHE,J.JIN,B.L.ROTH JRNL TITL STRUCTURAL DETERMINANTS OF 5-HT2BRECEPTOR ACTIVATION AND JRNL TITL 2 BIASED AGONISM. JRNL REF NAT. STRUCT. MOL. BIOL. V. 25 787 2018 JRNL REFN ESSN 1545-9985 JRNL PMID 30127358 JRNL DOI 10.1038/S41594-018-0116-7 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12_2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 3 NUMBER OF REFLECTIONS : 10596 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.227 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.263 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.710 REMARK 3 FREE R VALUE TEST SET COUNT : 499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.9559 - 4.9171 0.92 2584 125 0.2171 0.2273 REMARK 3 2 4.9171 - 3.9062 0.93 2542 106 0.2047 0.2758 REMARK 3 3 3.9062 - 3.4135 0.95 2554 135 0.2454 0.2855 REMARK 3 4 3.4135 - 3.1018 0.91 2417 133 0.2837 0.3300 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.490 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2965 REMARK 3 ANGLE : 0.709 4073 REMARK 3 CHIRALITY : 0.039 514 REMARK 3 PLANARITY : 0.005 491 REMARK 3 DIHEDRAL : 9.483 1716 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 40 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5178 16.1769 0.4502 REMARK 3 T TENSOR REMARK 3 T11: 0.3327 T22: 0.2874 REMARK 3 T33: 0.3794 T12: 0.0247 REMARK 3 T13: 0.0019 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 3.5570 L22: 3.6831 REMARK 3 L33: 2.9008 L12: -0.4906 REMARK 3 L13: -0.5502 L23: 0.7946 REMARK 3 S TENSOR REMARK 3 S11: 0.0565 S12: -0.0799 S13: -0.0129 REMARK 3 S21: -0.0065 S22: -0.0459 S23: 0.3379 REMARK 3 S31: -0.2920 S32: -0.3326 S33: 0.0240 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1001 THROUGH 1106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.7489 5.5269 -44.5974 REMARK 3 T TENSOR REMARK 3 T11: 0.5601 T22: 1.0596 REMARK 3 T33: 0.6379 T12: -0.1366 REMARK 3 T13: 0.1453 T23: -0.1241 REMARK 3 L TENSOR REMARK 3 L11: 3.3411 L22: 8.6646 REMARK 3 L33: 7.0126 L12: -0.0587 REMARK 3 L13: 1.8870 L23: 0.1899 REMARK 3 S TENSOR REMARK 3 S11: -0.4519 S12: 0.6283 S13: -0.3509 REMARK 3 S21: -0.5753 S22: 0.2928 S23: -0.6059 REMARK 3 S31: 0.4853 S32: 0.5784 S33: 0.2114 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.5877 22.8860 -5.3558 REMARK 3 T TENSOR REMARK 3 T11: 0.7551 T22: 0.3353 REMARK 3 T33: 0.5068 T12: 0.0520 REMARK 3 T13: 0.0924 T23: -0.1387 REMARK 3 L TENSOR REMARK 3 L11: 4.5605 L22: 2.6711 REMARK 3 L33: 4.7426 L12: 0.1994 REMARK 3 L13: 0.2343 L23: -2.0024 REMARK 3 S TENSOR REMARK 3 S11: 0.2732 S12: -0.0514 S13: 0.0176 REMARK 3 S21: -0.0096 S22: -0.1854 S23: 0.1469 REMARK 3 S31: -0.8146 S32: 0.2211 S33: -0.1200 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235165. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10618 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.84500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY: 4IB4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS/HCL PH 7.3-7.5, 40-100 MM REMARK 280 MGCL2, 30% V/V PEG400, LIPIDIC CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.31200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.31200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.54750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.64150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.54750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.64150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 86.31200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.54750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.64150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 86.31200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.54750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.64150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 36 REMARK 465 GLU A 37 REMARK 465 SER A 38 REMARK 465 ASN A 164 REMARK 465 GLN A 165 REMARK 465 TYR A 166 REMARK 465 LYS A 1047 REMARK 465 LEU A 1048 REMARK 465 GLU A 1049 REMARK 465 ASP A 1050 REMARK 465 LYS A 1051 REMARK 465 SER A 1052 REMARK 465 PRO A 1053 REMARK 465 ASP A 1054 REMARK 465 SER A 1055 REMARK 465 PRO A 1056 REMARK 465 GLU A 1057 REMARK 465 MET A 1058 REMARK 465 LYS A 1059 REMARK 465 ALA A 401 REMARK 465 THR A 402 REMARK 465 LYS A 403 REMARK 465 SER A 404 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 GLU A 42 CG CD OE1 OE2 REMARK 470 MET A 43 CG SD CE REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 GLN A 45 CG CD OE1 NE2 REMARK 470 ILE A 46 CG1 CG2 CD1 REMARK 470 VAL A 47 CG1 CG2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLU A 49 CG CD OE1 OE2 REMARK 470 GLN A 50 CG CD OE1 NE2 REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 GLU A 82 CG CD OE1 OE2 REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 LYS A 84 CG CD CE NZ REMARK 470 THR A 89 OG1 CG2 REMARK 470 TYR A 91 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU A 118 CG CD OE1 OE2 REMARK 470 MET A 120 CG SD CE REMARK 470 LEU A 125 CG CD1 CD2 REMARK 470 ARG A 153 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 ILE A 161 CG1 CG2 CD1 REMARK 470 GLN A 162 CG CD OE1 NE2 REMARK 470 ASN A 167 CG OD1 ND2 REMARK 470 SER A 168 OG REMARK 470 ARG A 169 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 196 CG CD OE1 OE2 REMARK 470 THR A 197 OG1 CG2 REMARK 470 VAL A 199 CG1 CG2 REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 ASN A 201 CG OD1 ND2 REMARK 470 ASN A 203 CG OD1 ND2 REMARK 470 ASN A 204 CG OD1 ND2 REMARK 470 THR A 206 OG1 CG2 REMARK 470 ASP A 216 CG OD1 OD2 REMARK 470 HIS A 242 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 GLU A1004 CG CD OE1 OE2 REMARK 470 GLU A1008 CG CD OE1 OE2 REMARK 470 ASP A1012 CG OD1 OD2 REMARK 470 LYS A1015 CG CD CE NZ REMARK 470 GLU A1018 CG CD OE1 OE2 REMARK 470 LYS A1019 CG CD CE NZ REMARK 470 ASP A1021 CG OD1 OD2 REMARK 470 GLN A1025 CG CD OE1 NE2 REMARK 470 VAL A1026 CG1 CG2 REMARK 470 LYS A1027 CG CD CE NZ REMARK 470 ASP A1028 CG OD1 OD2 REMARK 470 LYS A1032 CG CD CE NZ REMARK 470 LYS A1042 CG CD CE NZ REMARK 470 LYS A1077 CG CD CE NZ REMARK 470 ASN A1080 CG OD1 ND2 REMARK 470 GLU A1081 CG CD OE1 OE2 REMARK 470 LYS A1083 CG CD CE NZ REMARK 470 VAL A1084 CG1 CG2 REMARK 470 LYS A1085 CG CD CE NZ REMARK 470 GLU A1086 CG CD OE1 OE2 REMARK 470 GLN A1088 CG CD OE1 NE2 REMARK 470 GLU A1092 CG CD OE1 OE2 REMARK 470 GLN A1093 CG CD OE1 NE2 REMARK 470 LYS A1095 CG CD CE NZ REMARK 470 THR A1096 OG1 CG2 REMARK 470 GLN A1103 CG CD OE1 NE2 REMARK 470 LYS A1104 CG CD CE NZ REMARK 470 LEU A1106 CG CD1 CD2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ASP A 351 CG OD1 OD2 REMARK 470 GLU A 363 CG CD OE1 OE2 REMARK 470 LYS A 385 CG CD CE NZ REMARK 470 ARG A 400 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 64 -60.19 -120.64 REMARK 500 TYR A 87 -170.26 -173.95 REMARK 500 PRO A 124 170.17 -55.20 REMARK 500 THR A 206 81.22 59.44 REMARK 500 LEU A 219 -68.65 -92.64 REMARK 500 PHE A 226 -54.57 -129.55 REMARK 500 LYS A1083 85.48 -69.15 REMARK 500 TYR A1101 -61.69 -122.36 REMARK 500 TYR A 399 -137.60 59.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLA A 1202 REMARK 610 OLC A 1203 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CLR A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLA A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H8J A 1206 DBREF 6DRZ A 36 248 UNP P41595 5HT2B_HUMAN 36 248 DBREF 6DRZ A 1001 1101 UNP P0ABE7 C562_ECOLX 23 123 DBREF 6DRZ A 313 404 UNP P41595 5HT2B_HUMAN 313 404 SEQADV 6DRZ TRP A 144 UNP P41595 MET 144 ENGINEERED MUTATION SEQADV 6DRZ GLY A 225 UNP P41595 ALA 225 ENGINEERED MUTATION SEQADV 6DRZ TRP A 1007 UNP P0ABE7 MET 29 ENGINEERED MUTATION SEQADV 6DRZ ILE A 1102 UNP P0ABE7 LINKER SEQADV 6DRZ GLN A 1103 UNP P0ABE7 LINKER SEQADV 6DRZ LYS A 1104 UNP P0ABE7 LINKER SEQADV 6DRZ TYR A 1105 UNP P0ABE7 LINKER SEQADV 6DRZ LEU A 1106 UNP P0ABE7 LINKER SEQRES 1 A 411 THR GLU SER ILE PRO GLU GLU MET LYS GLN ILE VAL GLU SEQRES 2 A 411 GLU GLN GLY ASN LYS LEU HIS TRP ALA ALA LEU LEU ILE SEQRES 3 A 411 LEU MET VAL ILE ILE PRO THR ILE GLY GLY ASN THR LEU SEQRES 4 A 411 VAL ILE LEU ALA VAL SER LEU GLU LYS LYS LEU GLN TYR SEQRES 5 A 411 ALA THR ASN TYR PHE LEU MET SER LEU ALA VAL ALA ASP SEQRES 6 A 411 LEU LEU VAL GLY LEU PHE VAL MET PRO ILE ALA LEU LEU SEQRES 7 A 411 THR ILE MET PHE GLU ALA MET TRP PRO LEU PRO LEU VAL SEQRES 8 A 411 LEU CYS PRO ALA TRP LEU PHE LEU ASP VAL LEU PHE SER SEQRES 9 A 411 THR ALA SER ILE TRP HIS LEU CYS ALA ILE SER VAL ASP SEQRES 10 A 411 ARG TYR ILE ALA ILE LYS LYS PRO ILE GLN ALA ASN GLN SEQRES 11 A 411 TYR ASN SER ARG ALA THR ALA PHE ILE LYS ILE THR VAL SEQRES 12 A 411 VAL TRP LEU ILE SER ILE GLY ILE ALA ILE PRO VAL PRO SEQRES 13 A 411 ILE LYS GLY ILE GLU THR ASP VAL ASP ASN PRO ASN ASN SEQRES 14 A 411 ILE THR CYS VAL LEU THR LYS GLU ARG PHE GLY ASP PHE SEQRES 15 A 411 MET LEU PHE GLY SER LEU ALA GLY PHE PHE THR PRO LEU SEQRES 16 A 411 ALA ILE MET ILE VAL THR TYR PHE LEU THR ILE HIS ALA SEQRES 17 A 411 LEU GLN LYS LYS ALA ALA ASP LEU GLU ASP ASN TRP GLU SEQRES 18 A 411 THR LEU ASN ASP ASN LEU LYS VAL ILE GLU LYS ALA ASP SEQRES 19 A 411 ASN ALA ALA GLN VAL LYS ASP ALA LEU THR LYS MET ARG SEQRES 20 A 411 ALA ALA ALA LEU ASP ALA GLN LYS ALA THR PRO PRO LYS SEQRES 21 A 411 LEU GLU ASP LYS SER PRO ASP SER PRO GLU MET LYS ASP SEQRES 22 A 411 PHE ARG HIS GLY PHE ASP ILE LEU VAL GLY GLN ILE ASP SEQRES 23 A 411 ASP ALA LEU LYS LEU ALA ASN GLU GLY LYS VAL LYS GLU SEQRES 24 A 411 ALA GLN ALA ALA ALA GLU GLN LEU LYS THR THR ARG ASN SEQRES 25 A 411 ALA TYR ILE GLN LYS TYR LEU VAL GLN THR ILE SER ASN SEQRES 26 A 411 GLU GLN ARG ALA SER LYS VAL LEU GLY ILE VAL PHE PHE SEQRES 27 A 411 LEU PHE LEU LEU MET TRP CYS PRO PHE PHE ILE THR ASN SEQRES 28 A 411 ILE THR LEU VAL LEU CYS ASP SER CYS ASN GLN THR THR SEQRES 29 A 411 LEU GLN MET LEU LEU GLU ILE PHE VAL TRP ILE GLY TYR SEQRES 30 A 411 VAL SER SER GLY VAL ASN PRO LEU VAL TYR THR LEU PHE SEQRES 31 A 411 ASN LYS THR PHE ARG ASP ALA PHE GLY ARG TYR ILE THR SEQRES 32 A 411 CYS ASN TYR ARG ALA THR LYS SER HET CLR A1201 28 HET OLA A1202 17 HET OLC A1203 19 HET PEG A1204 7 HET PO4 A1205 5 HET H8J A1206 26 HETNAM CLR CHOLESTEROL HETNAM OLA OLEIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PO4 PHOSPHATE ION HETNAM H8J (8ALPHA)-N-[(2S)-1-HYDROXYBUTAN-2-YL]-1,6-DIMETHYL-9, HETNAM 2 H8J 10-DIDEHYDROERGOLINE-8-CARBOXAMIDE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN H8J METHYSERGIDE FORMUL 2 CLR C27 H46 O FORMUL 3 OLA C18 H34 O2 FORMUL 4 OLC C21 H40 O4 FORMUL 5 PEG C4 H10 O3 FORMUL 6 PO4 O4 P 3- FORMUL 7 H8J C21 H27 N3 O2 FORMUL 8 HOH *3(H2 O) HELIX 1 AA1 ILE A 39 GLN A 50 1 12 HELIX 2 AA2 LYS A 53 VAL A 64 1 12 HELIX 3 AA3 VAL A 64 GLU A 82 1 19 HELIX 4 AA4 LYS A 83 GLN A 86 5 4 HELIX 5 AA5 TYR A 87 PHE A 117 1 31 HELIX 6 AA6 VAL A 126 LYS A 159 1 34 HELIX 7 AA7 SER A 168 ILE A 188 1 21 HELIX 8 AA8 ILE A 188 GLY A 194 1 7 HELIX 9 AA9 THR A 210 PHE A 226 1 17 HELIX 10 AB1 PHE A 226 LYS A 1019 1 42 HELIX 11 AB2 ALA A 1023 LYS A 1042 1 20 HELIX 12 AB3 ARG A 1062 GLY A 1082 1 21 HELIX 13 AB4 LYS A 1083 GLU A 1092 1 10 HELIX 14 AB5 GLN A 1093 TYR A 1101 1 9 HELIX 15 AB6 TYR A 1101 MET A 336 1 30 HELIX 16 AB7 TRP A 337 CYS A 350 1 14 HELIX 17 AB8 ASN A 354 VAL A 375 1 22 HELIX 18 AB9 VAL A 375 LEU A 382 1 8 HELIX 19 AC1 ASN A 384 THR A 396 1 13 SSBOND 1 CYS A 128 CYS A 207 1555 1555 2.00 SSBOND 2 CYS A 350 CYS A 353 1555 1555 2.03 SITE 1 AC1 4 ILE A 66 ILE A 69 TYR A 394 TYR A 399 SITE 1 AC2 5 GLY A 185 LYS A 193 ASP A 216 PHE A 217 SITE 2 AC2 5 PHE A 220 SITE 1 AC3 5 SER A 150 MET A 233 TYR A 237 THR A 240 SITE 2 AC3 5 LEU A 326 SITE 1 AC4 1 TYR A 380 SITE 1 AC5 3 ARG A 388 ASP A 389 GLY A 392 SITE 1 AC6 10 ASP A 135 SER A 139 THR A 140 VAL A 208 SITE 2 AC6 10 LEU A 209 PHE A 217 GLY A 221 GLY A 225 SITE 3 AC6 10 PHE A 340 HOH A1301 CRYST1 59.095 119.283 172.624 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016922 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005793 0.00000