HEADER LIGASE/DNA 14-JUN-18 6DT1 TITLE CRYSTAL STRUCTURE OF THE LIGASE FROM BACTERIOPHAGE T4 COMPLEXED WITH TITLE 2 DNA INTERMEDIATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A, E; COMPND 4 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [ATP]; COMPND 5 EC: 6.5.1.1; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*TP*(DOC))-3'); COMPND 9 CHAIN: B, F; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D((AMP)*GP*TP*CP*GP*GP*AP*CP*TP*GP*AP*)-3'); COMPND 13 CHAIN: C, G; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'- COMPND 17 D(*TP*CP*AP*GP*TP*CP*CP*GP*AP*CP*GP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)- COMPND 18 3'); COMPND 19 CHAIN: D, H; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: BACTERIOPHAGE T4; SOURCE 4 ORGANISM_TAXID: 10665; SOURCE 5 GENE: 30; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 11 ORGANISM_TAXID: 10665; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 15 ORGANISM_TAXID: 10665; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 19 ORGANISM_TAXID: 10665 KEYWDS LIGASE-DNA COMPLEX, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR K.SHI,H.AIHARA REVDAT 5 11-OCT-23 6DT1 1 LINK REVDAT 4 01-JAN-20 6DT1 1 REMARK REVDAT 3 10-JUL-19 6DT1 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 SEQRES LINK SITE ATOM REVDAT 2 14-NOV-18 6DT1 1 JRNL REVDAT 1 19-SEP-18 6DT1 0 JRNL AUTH K.SHI,T.E.BOHL,J.PARK,A.ZASADA,S.MALIK,S.BANERJEE,V.TRAN, JRNL AUTH 2 N.LI,Z.YIN,F.KURNIAWAN,K.ORELLANA,H.AIHARA JRNL TITL T4 DNA LIGASE STRUCTURE REVEALS A PROTOTYPICAL ATP-DEPENDENT JRNL TITL 2 LIGASE WITH A UNIQUE MODE OF SLIDING CLAMP INTERACTION. JRNL REF NUCLEIC ACIDS RES. V. 46 10474 2018 JRNL REFN ESSN 1362-4962 JRNL PMID 30169742 JRNL DOI 10.1093/NAR/GKY776 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC1_3177: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 113.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 42747 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 9564 REMARK 3 ANGLE : 0.796 13196 REMARK 3 CHIRALITY : 0.047 1470 REMARK 3 PLANARITY : 0.004 1371 REMARK 3 DIHEDRAL : 18.020 5510 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -65.8212 -51.2927 -48.6039 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.3526 REMARK 3 T33: 0.5325 T12: 0.1099 REMARK 3 T13: 0.1402 T23: 0.1575 REMARK 3 L TENSOR REMARK 3 L11: 2.3577 L22: 2.0637 REMARK 3 L33: 2.9804 L12: 0.2044 REMARK 3 L13: 0.1955 L23: 0.5843 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: 0.2072 S13: 0.4899 REMARK 3 S21: -0.0010 S22: 0.1970 S23: 0.4340 REMARK 3 S31: -0.2194 S32: -0.4999 S33: -0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.6478 -76.4121 -36.7964 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.2038 REMARK 3 T33: 0.3907 T12: 0.0043 REMARK 3 T13: 0.0580 T23: 0.0823 REMARK 3 L TENSOR REMARK 3 L11: 2.0217 L22: 1.9746 REMARK 3 L33: 0.6495 L12: -0.2020 REMARK 3 L13: -0.5296 L23: -0.2847 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.1557 S13: -0.2457 REMARK 3 S21: 0.2528 S22: -0.0512 S23: -0.0448 REMARK 3 S31: 0.0399 S32: 0.0504 S33: 0.0021 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 201 THROUGH 291 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.9621 -82.8686 -43.1231 REMARK 3 T TENSOR REMARK 3 T11: 0.4020 T22: 0.1258 REMARK 3 T33: 0.4805 T12: 0.0187 REMARK 3 T13: 0.0538 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.9156 L22: 2.1580 REMARK 3 L33: 3.6826 L12: 0.5705 REMARK 3 L13: 0.2627 L23: -0.9225 REMARK 3 S TENSOR REMARK 3 S11: -0.1206 S12: 0.1273 S13: -0.5073 REMARK 3 S21: -0.1390 S22: -0.0286 S23: -0.2257 REMARK 3 S31: 0.4433 S32: -0.2049 S33: 0.1344 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 292 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -37.7203 -68.6647 -39.1809 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.2598 REMARK 3 T33: 0.4031 T12: 0.0648 REMARK 3 T13: -0.0190 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.6699 L22: 2.1809 REMARK 3 L33: 0.7688 L12: 0.9464 REMARK 3 L13: -0.5573 L23: -0.4774 REMARK 3 S TENSOR REMARK 3 S11: 0.0724 S12: -0.1121 S13: -0.2458 REMARK 3 S21: 0.2785 S22: -0.0901 S23: -0.3278 REMARK 3 S31: 0.0852 S32: 0.1670 S33: 0.0126 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 422 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.0225 -58.4085 -54.2364 REMARK 3 T TENSOR REMARK 3 T11: 0.2260 T22: 0.3223 REMARK 3 T33: 0.4576 T12: 0.0328 REMARK 3 T13: 0.0747 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 5.2883 L22: 2.4091 REMARK 3 L33: 2.8562 L12: -1.4778 REMARK 3 L13: -0.8585 L23: -0.3653 REMARK 3 S TENSOR REMARK 3 S11: -0.1373 S12: 0.4574 S13: -0.0933 REMARK 3 S21: -0.3434 S22: 0.1146 S23: -0.5276 REMARK 3 S31: 0.1987 S32: 0.1909 S33: 0.0377 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.9071-106.4594 19.7056 REMARK 3 T TENSOR REMARK 3 T11: 1.5703 T22: 1.1876 REMARK 3 T33: 0.7959 T12: -0.2959 REMARK 3 T13: -0.3591 T23: 0.3146 REMARK 3 L TENSOR REMARK 3 L11: 2.5574 L22: 0.2311 REMARK 3 L33: 7.4604 L12: -0.4693 REMARK 3 L13: 1.5800 L23: 0.5062 REMARK 3 S TENSOR REMARK 3 S11: 0.3610 S12: -0.7708 S13: -0.9164 REMARK 3 S21: -0.0304 S22: 0.0395 S23: 0.1495 REMARK 3 S31: 1.3100 S32: -0.1620 S33: -0.3794 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 126 THROUGH 421 ) REMARK 3 ORIGIN FOR THE GROUP (A): -67.6014 -80.4132 2.3064 REMARK 3 T TENSOR REMARK 3 T11: 0.7499 T22: 0.8035 REMARK 3 T33: 0.5019 T12: 0.1111 REMARK 3 T13: -0.0353 T23: -0.0559 REMARK 3 L TENSOR REMARK 3 L11: 3.3187 L22: 1.7143 REMARK 3 L33: 4.5881 L12: 0.5186 REMARK 3 L13: -0.0084 L23: -0.2416 REMARK 3 S TENSOR REMARK 3 S11: 0.3429 S12: -0.6647 S13: 0.3154 REMARK 3 S21: 0.2333 S22: -0.1173 S23: 0.3947 REMARK 3 S31: -0.3378 S32: -0.7829 S33: -0.2177 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 422 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.5635 -82.0276 -5.0037 REMARK 3 T TENSOR REMARK 3 T11: 0.7106 T22: 0.8888 REMARK 3 T33: 0.4580 T12: 0.0317 REMARK 3 T13: -0.1875 T23: -0.0305 REMARK 3 L TENSOR REMARK 3 L11: 8.2560 L22: 4.6097 REMARK 3 L33: 4.4745 L12: -2.0710 REMARK 3 L13: 0.7624 L23: -4.3587 REMARK 3 S TENSOR REMARK 3 S11: 0.4376 S12: 0.0355 S13: 0.0993 REMARK 3 S21: -0.0414 S22: -0.5632 S23: -0.4376 REMARK 3 S31: -0.0390 S32: 1.1677 S33: 0.0587 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235155. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 113.572 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1X9N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24990 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 VAL A 224 REMARK 465 LYS A 225 REMARK 465 LYS A 226 REMARK 465 GLU A 227 REMARK 465 PRO A 228 REMARK 465 GLU A 229 REMARK 465 GLY A 230 REMARK 465 LEU A 231 REMARK 465 ASP A 232 REMARK 465 PHE A 233 REMARK 465 LEU A 234 REMARK 465 PHE A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 TYR A 238 REMARK 465 PRO A 239 REMARK 465 GLU A 240 REMARK 465 ASN A 241 REMARK 465 SER A 242 REMARK 465 LYS A 243 REMARK 465 ALA A 244 REMARK 465 LYS A 245 REMARK 465 GLU A 246 REMARK 465 PHE A 247 REMARK 465 MET E -19 REMARK 465 GLY E -18 REMARK 465 SER E -17 REMARK 465 SER E -16 REMARK 465 HIS E -15 REMARK 465 HIS E -14 REMARK 465 HIS E -13 REMARK 465 HIS E -12 REMARK 465 HIS E -11 REMARK 465 HIS E -10 REMARK 465 SER E -9 REMARK 465 SER E -8 REMARK 465 GLY E -7 REMARK 465 LEU E -6 REMARK 465 VAL E -5 REMARK 465 PRO E -4 REMARK 465 ARG E -3 REMARK 465 GLY E -2 REMARK 465 SER E -1 REMARK 465 HIS E 0 REMARK 465 GLU E 222 REMARK 465 GLN E 223 REMARK 465 VAL E 224 REMARK 465 LYS E 225 REMARK 465 LYS E 226 REMARK 465 GLU E 227 REMARK 465 PRO E 228 REMARK 465 GLU E 229 REMARK 465 GLY E 230 REMARK 465 LEU E 231 REMARK 465 ASP E 232 REMARK 465 PHE E 233 REMARK 465 LEU E 234 REMARK 465 PHE E 235 REMARK 465 ASP E 236 REMARK 465 ALA E 237 REMARK 465 TYR E 238 REMARK 465 PRO E 239 REMARK 465 GLU E 240 REMARK 465 ASN E 241 REMARK 465 SER E 242 REMARK 465 LYS E 243 REMARK 465 ALA E 244 REMARK 465 LYS E 245 REMARK 465 GLU E 246 REMARK 465 PHE E 247 REMARK 465 ALA E 248 REMARK 465 GLU E 249 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG E 164 O3' AMP E 501 1.30 REMARK 500 OP1 DG C 12 O HOH C 201 2.08 REMARK 500 OD2 ASP E 112 NZ LYS E 384 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 9 O3' DG B 9 C3' -0.044 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG F 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC F 8 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DC H 31 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 118 -130.27 -122.11 REMARK 500 LEU A 190 49.69 -98.43 REMARK 500 GLU A 249 -89.97 -81.46 REMARK 500 TRP A 282 -3.67 -142.84 REMARK 500 ILE A 462 -67.28 -94.62 REMARK 500 SER E 118 -129.63 -122.62 REMARK 500 LEU E 190 51.00 -98.75 REMARK 500 TRP E 282 -6.08 -143.77 REMARK 500 ILE E 462 -67.18 -94.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 770 DISTANCE = 6.22 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 517 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HOH A 639 O 90.4 REMARK 620 3 HOH C 204 O 136.4 128.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL E 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AMP C 100 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT D 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT D 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide AMP E 501 and DG REMARK 800 G 12 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DT F 10 and DOC F REMARK 800 11 DBREF 6DT1 A 1 487 UNP P00970 DNLI_BPT4 1 487 DBREF 6DT1 E 1 487 UNP P00970 DNLI_BPT4 1 487 DBREF 6DT1 B 1 11 PDB 6DT1 6DT1 1 11 DBREF 6DT1 C 12 21 PDB 6DT1 6DT1 12 21 DBREF 6DT1 D 22 42 PDB 6DT1 6DT1 22 42 DBREF 6DT1 F 1 11 PDB 6DT1 6DT1 1 11 DBREF 6DT1 G 12 21 PDB 6DT1 6DT1 12 21 DBREF 6DT1 H 22 42 PDB 6DT1 6DT1 22 42 SEQADV 6DT1 MET A -19 UNP P00970 INITIATING METHIONINE SEQADV 6DT1 GLY A -18 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER A -17 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER A -16 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -15 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -14 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -13 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -12 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -11 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A -10 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER A -9 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER A -8 UNP P00970 EXPRESSION TAG SEQADV 6DT1 GLY A -7 UNP P00970 EXPRESSION TAG SEQADV 6DT1 LEU A -6 UNP P00970 EXPRESSION TAG SEQADV 6DT1 VAL A -5 UNP P00970 EXPRESSION TAG SEQADV 6DT1 PRO A -4 UNP P00970 EXPRESSION TAG SEQADV 6DT1 ARG A -3 UNP P00970 EXPRESSION TAG SEQADV 6DT1 GLY A -2 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER A -1 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS A 0 UNP P00970 EXPRESSION TAG SEQADV 6DT1 MET E -19 UNP P00970 INITIATING METHIONINE SEQADV 6DT1 GLY E -18 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER E -17 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER E -16 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -15 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -14 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -13 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -12 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -11 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E -10 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER E -9 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER E -8 UNP P00970 EXPRESSION TAG SEQADV 6DT1 GLY E -7 UNP P00970 EXPRESSION TAG SEQADV 6DT1 LEU E -6 UNP P00970 EXPRESSION TAG SEQADV 6DT1 VAL E -5 UNP P00970 EXPRESSION TAG SEQADV 6DT1 PRO E -4 UNP P00970 EXPRESSION TAG SEQADV 6DT1 ARG E -3 UNP P00970 EXPRESSION TAG SEQADV 6DT1 GLY E -2 UNP P00970 EXPRESSION TAG SEQADV 6DT1 SER E -1 UNP P00970 EXPRESSION TAG SEQADV 6DT1 HIS E 0 UNP P00970 EXPRESSION TAG SEQRES 1 A 507 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 507 LEU VAL PRO ARG GLY SER HIS MET ILE LEU LYS ILE LEU SEQRES 3 A 507 ASN GLU ILE ALA SER ILE GLY SER THR LYS GLN LYS GLN SEQRES 4 A 507 ALA ILE LEU GLU LYS ASN LYS ASP ASN GLU LEU LEU LYS SEQRES 5 A 507 ARG VAL TYR ARG LEU THR TYR SER ARG GLY LEU GLN TYR SEQRES 6 A 507 TYR ILE LYS LYS TRP PRO LYS PRO GLY ILE ALA THR GLN SEQRES 7 A 507 SER PHE GLY MET LEU THR LEU THR ASP MET LEU ASP PHE SEQRES 8 A 507 ILE GLU PHE THR LEU ALA THR ARG LYS LEU THR GLY ASN SEQRES 9 A 507 ALA ALA ILE GLU GLU LEU THR GLY TYR ILE THR ASP GLY SEQRES 10 A 507 LYS LYS ASP ASP VAL GLU VAL LEU ARG ARG VAL MET MET SEQRES 11 A 507 ARG ASP LEU GLU CYS GLY ALA SER VAL SER ILE ALA ASN SEQRES 12 A 507 LYS VAL TRP PRO GLY LEU ILE PRO GLU GLN PRO GLN MET SEQRES 13 A 507 LEU ALA SER SER TYR ASP GLU LYS GLY ILE ASN LYS ASN SEQRES 14 A 507 ILE LYS PHE PRO ALA PHE ALA GLN LEU LYS ALA ASP GLY SEQRES 15 A 507 ALA ARG CYS PHE ALA GLU VAL ARG GLY ASP GLU LEU ASP SEQRES 16 A 507 ASP VAL ARG LEU LEU SER ARG ALA GLY ASN GLU TYR LEU SEQRES 17 A 507 GLY LEU ASP LEU LEU LYS GLU GLU LEU ILE LYS MET THR SEQRES 18 A 507 ALA GLU ALA ARG GLN ILE HIS PRO GLU GLY VAL LEU ILE SEQRES 19 A 507 ASP GLY GLU LEU VAL TYR HIS GLU GLN VAL LYS LYS GLU SEQRES 20 A 507 PRO GLU GLY LEU ASP PHE LEU PHE ASP ALA TYR PRO GLU SEQRES 21 A 507 ASN SER LYS ALA LYS GLU PHE ALA GLU VAL ALA GLU SER SEQRES 22 A 507 ARG THR ALA SER ASN GLY ILE ALA ASN LYS SER LEU LYS SEQRES 23 A 507 GLY THR ILE SER GLU LYS GLU ALA GLN CYS MET LYS PHE SEQRES 24 A 507 GLN VAL TRP ASP TYR VAL PRO LEU VAL GLU ILE TYR SER SEQRES 25 A 507 LEU PRO ALA PHE ARG LEU LYS TYR ASP VAL ARG PHE SER SEQRES 26 A 507 LYS LEU GLU GLN MET THR SER GLY TYR ASP LYS VAL ILE SEQRES 27 A 507 LEU ILE GLU ASN GLN VAL VAL ASN ASN LEU ASP GLU ALA SEQRES 28 A 507 LYS VAL ILE TYR LYS LYS TYR ILE ASP GLN GLY LEU GLU SEQRES 29 A 507 GLY ILE ILE LEU LYS ASN ILE ASP GLY LEU TRP GLU ASN SEQRES 30 A 507 ALA ARG SER LYS ASN LEU TYR LYS PHE LYS GLU VAL ILE SEQRES 31 A 507 ASP VAL ASP LEU LYS ILE VAL GLY ILE TYR PRO HIS ARG SEQRES 32 A 507 LYS ASP PRO THR LYS ALA GLY GLY PHE ILE LEU GLU SER SEQRES 33 A 507 GLU CYS GLY LYS ILE LYS VAL ASN ALA GLY SER GLY LEU SEQRES 34 A 507 LYS ASP LYS ALA GLY VAL LYS SER HIS GLU LEU ASP ARG SEQRES 35 A 507 THR ARG ILE MET GLU ASN GLN ASN TYR TYR ILE GLY LYS SEQRES 36 A 507 ILE LEU GLU CYS GLU CYS ASN GLY TRP LEU LYS SER ASP SEQRES 37 A 507 GLY ARG THR ASP TYR VAL LYS LEU PHE LEU PRO ILE ALA SEQRES 38 A 507 ILE ARG LEU ARG GLU ASP LYS THR LYS ALA ASN THR PHE SEQRES 39 A 507 GLU ASP VAL PHE GLY ASP PHE HIS GLU VAL THR GLY LEU SEQRES 1 E 507 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 E 507 LEU VAL PRO ARG GLY SER HIS MET ILE LEU LYS ILE LEU SEQRES 3 E 507 ASN GLU ILE ALA SER ILE GLY SER THR LYS GLN LYS GLN SEQRES 4 E 507 ALA ILE LEU GLU LYS ASN LYS ASP ASN GLU LEU LEU LYS SEQRES 5 E 507 ARG VAL TYR ARG LEU THR TYR SER ARG GLY LEU GLN TYR SEQRES 6 E 507 TYR ILE LYS LYS TRP PRO LYS PRO GLY ILE ALA THR GLN SEQRES 7 E 507 SER PHE GLY MET LEU THR LEU THR ASP MET LEU ASP PHE SEQRES 8 E 507 ILE GLU PHE THR LEU ALA THR ARG LYS LEU THR GLY ASN SEQRES 9 E 507 ALA ALA ILE GLU GLU LEU THR GLY TYR ILE THR ASP GLY SEQRES 10 E 507 LYS LYS ASP ASP VAL GLU VAL LEU ARG ARG VAL MET MET SEQRES 11 E 507 ARG ASP LEU GLU CYS GLY ALA SER VAL SER ILE ALA ASN SEQRES 12 E 507 LYS VAL TRP PRO GLY LEU ILE PRO GLU GLN PRO GLN MET SEQRES 13 E 507 LEU ALA SER SER TYR ASP GLU LYS GLY ILE ASN LYS ASN SEQRES 14 E 507 ILE LYS PHE PRO ALA PHE ALA GLN LEU LYS ALA ASP GLY SEQRES 15 E 507 ALA ARG CYS PHE ALA GLU VAL ARG GLY ASP GLU LEU ASP SEQRES 16 E 507 ASP VAL ARG LEU LEU SER ARG ALA GLY ASN GLU TYR LEU SEQRES 17 E 507 GLY LEU ASP LEU LEU LYS GLU GLU LEU ILE LYS MET THR SEQRES 18 E 507 ALA GLU ALA ARG GLN ILE HIS PRO GLU GLY VAL LEU ILE SEQRES 19 E 507 ASP GLY GLU LEU VAL TYR HIS GLU GLN VAL LYS LYS GLU SEQRES 20 E 507 PRO GLU GLY LEU ASP PHE LEU PHE ASP ALA TYR PRO GLU SEQRES 21 E 507 ASN SER LYS ALA LYS GLU PHE ALA GLU VAL ALA GLU SER SEQRES 22 E 507 ARG THR ALA SER ASN GLY ILE ALA ASN LYS SER LEU LYS SEQRES 23 E 507 GLY THR ILE SER GLU LYS GLU ALA GLN CYS MET LYS PHE SEQRES 24 E 507 GLN VAL TRP ASP TYR VAL PRO LEU VAL GLU ILE TYR SER SEQRES 25 E 507 LEU PRO ALA PHE ARG LEU LYS TYR ASP VAL ARG PHE SER SEQRES 26 E 507 LYS LEU GLU GLN MET THR SER GLY TYR ASP LYS VAL ILE SEQRES 27 E 507 LEU ILE GLU ASN GLN VAL VAL ASN ASN LEU ASP GLU ALA SEQRES 28 E 507 LYS VAL ILE TYR LYS LYS TYR ILE ASP GLN GLY LEU GLU SEQRES 29 E 507 GLY ILE ILE LEU LYS ASN ILE ASP GLY LEU TRP GLU ASN SEQRES 30 E 507 ALA ARG SER LYS ASN LEU TYR LYS PHE LYS GLU VAL ILE SEQRES 31 E 507 ASP VAL ASP LEU LYS ILE VAL GLY ILE TYR PRO HIS ARG SEQRES 32 E 507 LYS ASP PRO THR LYS ALA GLY GLY PHE ILE LEU GLU SER SEQRES 33 E 507 GLU CYS GLY LYS ILE LYS VAL ASN ALA GLY SER GLY LEU SEQRES 34 E 507 LYS ASP LYS ALA GLY VAL LYS SER HIS GLU LEU ASP ARG SEQRES 35 E 507 THR ARG ILE MET GLU ASN GLN ASN TYR TYR ILE GLY LYS SEQRES 36 E 507 ILE LEU GLU CYS GLU CYS ASN GLY TRP LEU LYS SER ASP SEQRES 37 E 507 GLY ARG THR ASP TYR VAL LYS LEU PHE LEU PRO ILE ALA SEQRES 38 E 507 ILE ARG LEU ARG GLU ASP LYS THR LYS ALA ASN THR PHE SEQRES 39 E 507 GLU ASP VAL PHE GLY ASP PHE HIS GLU VAL THR GLY LEU SEQRES 1 B 11 DG DC DT DG DA DT DG DC DG DT DOC SEQRES 1 C 10 DG DT DC DG DG DA DC DT DG DA SEQRES 1 D 21 DT DC DA DG DT DC DC DG DA DC DG DA DC SEQRES 2 D 21 DG DC DA DT DC DA DG DC SEQRES 1 F 11 DG DC DT DG DA DT DG DC DG DT DOC SEQRES 1 G 10 DG DT DC DG DG DA DC DT DG DA SEQRES 1 H 21 DT DC DA DG DT DC DC DG DA DC DG DA DC SEQRES 2 H 21 DG DC DA DT DC DA DG DC HET DOC B 11 18 HET DOC F 11 18 HET GOL A 501 6 HET GOL A 502 6 HET GOL A 503 6 HET GOL A 504 6 HET GOL A 505 6 HET 1PE A 506 16 HET GOL A 507 6 HET GOL A 508 6 HET GOL A 509 6 HET GOL A 510 6 HET GOL A 511 6 HET DTT A 512 8 HET DTT A 513 8 HET GOL A 514 6 HET GOL A 515 6 HET CL A 516 1 HET MG A 517 1 HET AMP E 501 23 HET CL E 502 1 HET DTT B 401 8 HET AMP C 100 23 HET DTT D 401 8 HET DTT D 402 8 HETNAM DOC 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN 1PE PEG400 HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 3 DOC 2(C9 H14 N3 O6 P) FORMUL 9 GOL 12(C3 H8 O3) FORMUL 14 1PE C10 H22 O6 FORMUL 20 DTT 5(C4 H10 O2 S2) FORMUL 24 CL 2(CL 1-) FORMUL 25 MG MG 2+ FORMUL 26 AMP 2(C10 H14 N5 O7 P) FORMUL 32 HOH *267(H2 O) HELIX 1 AA1 MET A 1 SER A 11 1 11 HELIX 2 AA2 SER A 14 LYS A 24 1 11 HELIX 3 AA3 ASN A 28 SER A 40 1 13 HELIX 4 AA4 THR A 64 THR A 75 1 12 HELIX 5 AA5 GLY A 83 GLY A 97 1 15 HELIX 6 AA6 LYS A 98 ARG A 111 1 14 HELIX 7 AA7 SER A 118 TRP A 126 1 9 HELIX 8 AA8 ASP A 142 ILE A 150 1 9 HELIX 9 AA9 GLU A 173 ASP A 175 5 3 HELIX 10 AB1 LEU A 190 THR A 201 1 12 HELIX 11 AB2 THR A 201 HIS A 208 1 8 HELIX 12 AB3 SER A 253 LYS A 266 1 14 HELIX 13 AB4 SER A 270 CYS A 276 1 7 HELIX 14 AB5 LEU A 287 SER A 292 1 6 HELIX 15 AB6 LYS A 299 THR A 311 1 13 HELIX 16 AB7 ASN A 327 GLN A 341 1 15 HELIX 17 AB8 ASP A 421 ASN A 428 1 8 HELIX 18 AB9 ASN A 428 ILE A 433 1 6 HELIX 19 AC1 THR A 473 GLY A 479 1 7 HELIX 20 AC2 ASP A 480 GLY A 486 1 7 HELIX 21 AC3 ILE E 2 SER E 11 1 10 HELIX 22 AC4 SER E 14 LYS E 24 1 11 HELIX 23 AC5 ASN E 28 SER E 40 1 13 HELIX 24 AC6 THR E 64 THR E 75 1 12 HELIX 25 AC7 GLY E 83 GLY E 97 1 15 HELIX 26 AC8 LYS E 98 MET E 110 1 13 HELIX 27 AC9 SER E 118 TRP E 126 1 9 HELIX 28 AD1 ASP E 142 ILE E 150 1 9 HELIX 29 AD2 GLU E 173 ASP E 175 5 3 HELIX 30 AD3 LEU E 190 THR E 201 1 12 HELIX 31 AD4 THR E 201 HIS E 208 1 8 HELIX 32 AD5 SER E 253 LYS E 266 1 14 HELIX 33 AD6 SER E 270 CYS E 276 1 7 HELIX 34 AD7 LEU E 287 SER E 292 1 6 HELIX 35 AD8 LYS E 299 THR E 311 1 13 HELIX 36 AD9 ASN E 327 GLN E 341 1 15 HELIX 37 AE1 ASP E 421 ASN E 428 1 8 HELIX 38 AE2 ASN E 428 ILE E 433 1 6 HELIX 39 AE3 THR E 473 GLY E 479 1 7 HELIX 40 AE4 ASP E 480 GLY E 486 1 7 SHEET 1 AA1 5 LEU A 137 SER A 139 0 SHEET 2 AA1 5 ARG A 359 LYS A 367 1 O LEU A 363 N SER A 139 SHEET 3 AA1 5 GLY A 345 LYS A 349 -1 N LEU A 348 O TYR A 364 SHEET 4 AA1 5 ALA A 154 LEU A 158 -1 N GLN A 157 O ILE A 347 SHEET 5 AA1 5 ASN A 322 VAL A 325 -1 O GLN A 323 N ALA A 156 SHEET 1 AA2 4 VAL A 177 LEU A 180 0 SHEET 2 AA2 4 ALA A 163 VAL A 169 -1 N PHE A 166 O LEU A 180 SHEET 3 AA2 4 VAL A 212 GLU A 222 -1 O LEU A 218 N ALA A 163 SHEET 4 AA2 4 VAL A 250 ALA A 251 -1 O VAL A 250 N GLU A 222 SHEET 1 AA3 5 VAL A 177 LEU A 180 0 SHEET 2 AA3 5 ALA A 163 VAL A 169 -1 N PHE A 166 O LEU A 180 SHEET 3 AA3 5 VAL A 212 GLU A 222 -1 O LEU A 218 N ALA A 163 SHEET 4 AA3 5 MET A 277 PRO A 286 -1 O VAL A 285 N LEU A 213 SHEET 5 AA3 5 VAL A 317 LEU A 319 1 O ILE A 318 N PHE A 279 SHEET 1 AA4 5 LYS A 402 ALA A 405 0 SHEET 2 AA4 5 ALA A 389 GLU A 395 -1 N LEU A 394 O VAL A 403 SHEET 3 AA4 5 ILE A 370 PRO A 381 -1 N LYS A 375 O GLU A 395 SHEET 4 AA4 5 ILE A 436 CYS A 441 -1 O LEU A 437 N LEU A 374 SHEET 5 AA4 5 ILE A 460 LEU A 464 -1 O ARG A 463 N GLU A 438 SHEET 1 AA5 2 GLY A 443 LEU A 445 0 SHEET 2 AA5 2 LYS A 455 PHE A 457 -1 O LYS A 455 N LEU A 445 SHEET 1 AA6 5 LEU E 137 SER E 139 0 SHEET 2 AA6 5 ARG E 359 LYS E 367 1 O LEU E 363 N SER E 139 SHEET 3 AA6 5 GLY E 345 LYS E 349 -1 N LEU E 348 O TYR E 364 SHEET 4 AA6 5 ALA E 154 LEU E 158 -1 N PHE E 155 O LYS E 349 SHEET 5 AA6 5 ASN E 322 VAL E 325 -1 O GLN E 323 N ALA E 156 SHEET 1 AA7 5 VAL E 177 LEU E 180 0 SHEET 2 AA7 5 ALA E 163 VAL E 169 -1 N PHE E 166 O LEU E 180 SHEET 3 AA7 5 VAL E 212 TYR E 220 -1 O VAL E 212 N VAL E 169 SHEET 4 AA7 5 MET E 277 PRO E 286 -1 O GLN E 280 N GLU E 217 SHEET 5 AA7 5 VAL E 317 LEU E 319 1 O ILE E 318 N PHE E 279 SHEET 1 AA8 5 LYS E 402 ALA E 405 0 SHEET 2 AA8 5 ALA E 389 GLU E 395 -1 N PHE E 392 O ALA E 405 SHEET 3 AA8 5 ILE E 370 PRO E 381 -1 N LYS E 375 O GLU E 395 SHEET 4 AA8 5 ILE E 436 CYS E 441 -1 O LEU E 437 N LEU E 374 SHEET 5 AA8 5 ILE E 460 LEU E 464 -1 O ILE E 460 N GLU E 440 SHEET 1 AA9 2 GLY E 443 LEU E 445 0 SHEET 2 AA9 2 LYS E 455 PHE E 457 -1 O LYS E 455 N LEU E 445 LINK O3P AMP E 501 P DG G 12 1555 1555 1.52 LINK O3' DT B 10 P DOC B 11 1555 1555 1.56 LINK P DG C 12 O1P AMP C 100 1555 1555 1.51 LINK O3' DT F 10 P DOC F 11 1555 1555 1.56 LINK OE2 GLU A 217 MG MG A 517 1555 1555 2.54 LINK MG MG A 517 O HOH A 639 1555 1555 2.88 LINK MG MG A 517 O HOH C 204 1555 1555 2.59 CISPEP 1 PHE A 152 PRO A 153 0 4.30 CISPEP 2 PHE E 152 PRO E 153 0 3.19 SITE 1 AC1 6 LYS A 26 ASP A 27 GLU A 29 LYS A 32 SITE 2 AC1 6 VAL A 125 TRP A 126 SITE 1 AC2 3 TYR A 141 TYR A 335 LYS A 367 SITE 1 AC3 3 TYR A 380 ASN A 404 DG D 32 SITE 1 AC4 2 ARG A 170 GLU A 210 SITE 1 AC5 8 ARG A 182 ARG A 359 LYS A 365 DTT A 512 SITE 2 AC5 8 HOH A 703 DG C 12 DT C 13 AMP C 100 SITE 1 AC6 16 TYR A 45 TYR A 46 ILE A 47 ARG A 79 SITE 2 AC6 16 THR A 82 GLY A 83 ALA A 86 ASN A 262 SITE 3 AC6 16 LYS A 266 DG B 7 DC B 8 DG B 9 SITE 4 AC6 16 DG D 35 DC D 36 DA D 37 DT D 38 SITE 1 AC7 3 GLU A 89 TYR A 93 ASP A 96 SITE 1 AC8 9 SER A 407 GLY A 408 LEU A 409 ARG A 422 SITE 2 AC8 9 HOH A 607 DC C 14 DG C 15 DG D 29 SITE 3 AC8 9 DA D 30 SITE 1 AC9 4 ARG A 297 LEU A 354 GLU A 356 ASN A 362 SITE 1 AD1 3 GLY A 189 GLY A 267 ILE A 269 SITE 1 AD2 6 GLU A 195 GLY A 414 VAL A 415 ARG A 424 SITE 2 AD2 6 GLU A 427 ASN A 428 SITE 1 AD3 6 ARG A 41 ARG A 182 GOL A 505 HOH A 697 SITE 2 AD3 6 HOH A 703 DOC B 11 SITE 1 AD4 2 GLU A 195 TYR A 432 SITE 1 AD5 6 GLN A 44 LYS A 48 ARG A 111 CL A 516 SITE 2 AD5 6 DC B 8 HOH B 502 SITE 1 AD6 3 SER A 118 DC D 28 DG D 29 SITE 1 AD7 1 GOL A 514 SITE 1 AD8 7 GLU A 217 HOH A 616 HOH A 639 DOC B 11 SITE 2 AD8 7 DG C 12 AMP C 100 HOH C 204 SITE 1 AD9 1 LYS E 367 SITE 1 AE1 7 DC B 8 DG B 9 DT B 10 HOH B 503 SITE 2 AE1 7 HOH B 516 HOH B 519 DTT D 402 SITE 1 AE2 17 GLN A 157 LEU A 158 LYS A 159 ALA A 160 SITE 2 AE2 17 ARG A 164 ARG A 182 GLU A 217 TRP A 282 SITE 3 AE2 17 ILE A 347 LYS A 349 LYS A 365 LYS A 367 SITE 4 AE2 17 GOL A 505 MG A 517 HOH A 628 DG C 12 SITE 5 AE2 17 HOH C 204 SITE 1 AE3 6 THR A 15 DC C 18 DT C 19 DG D 25 SITE 2 AE3 6 DT D 26 DC D 27 SITE 1 AE4 5 ARG A 383 DTT B 401 DG D 32 DA D 33 SITE 2 AE4 5 HOH D 502 SITE 1 AE5 24 ILE E 9 ALA E 10 SER E 11 GLY E 13 SITE 2 AE5 24 SER E 14 GLN E 17 LYS E 18 GLN E 157 SITE 3 AE5 24 LEU E 158 LYS E 159 ALA E 160 ARG E 164 SITE 4 AE5 24 ARG E 182 GLU E 217 TRP E 282 ILE E 347 SITE 5 AE5 24 LYS E 349 LYS E 365 LYS E 367 LEU E 458 SITE 6 AE5 24 DOC F 11 DT G 13 DC H 31 DG H 32 SITE 1 AE6 11 GLY E 162 ARG E 164 SER E 181 ALA E 183 SITE 2 AE6 11 ASN E 185 ASN E 258 PHE E 457 DG F 9 SITE 3 AE6 11 DG G 12 DG H 32 DA H 33 CRYST1 63.526 67.429 114.635 88.78 80.94 62.97 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015742 -0.008031 -0.002973 0.00000 SCALE2 0.000000 0.016649 0.000953 0.00000 SCALE3 0.000000 0.000000 0.008848 0.00000