HEADER OXIDOREDUCTASE/INHIBITOR 18-JUN-18 6DTP TITLE CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1 TITLE 2 COMPLEXED WITH EM139 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ESTRADIOL 17-BETA-DEHYDROGENASE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 1,17-BETA-HSD 1,20 COMPND 5 ALPHA-HYDROXYSTEROID DEHYDROGENASE,20-ALPHA-HSD,E2DH,PLACENTAL 17- COMPND 6 BETA-HYDROXYSTEROID DEHYDROGENASE,SHORT CHAIN DEHYDROGENASE/REDUCTASE COMPND 7 FAMILY 28C MEMBER 1; COMPND 8 EC: 1.1.1.62; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HSD17B1, E17KSR, EDH17B1, EDH17B2, EDHB17, SDR28C1; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC KEYWDS 17BETA-HSD1, OXIDOREDUCTASE, STEROID, INHIBITOR, OXIDOREDUCTASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.LI,S.X.LIN REVDAT 2 11-OCT-23 6DTP 1 REMARK REVDAT 1 12-SEP-18 6DTP 0 JRNL AUTH T.LI,D.ZHU,F.LABRIE,S.X.LIN JRNL TITL CRYSTAL STRUCTURE OF HUMAN 17BETA-HYDROXYSTEROID JRNL TITL 2 DEHYDROGENASE TYPE 1 COMPLEXED WITH DUAL-SITE INHIBITOR JRNL TITL 3 EM-139 JRNL REF HEALTH 2018 JRNL REFN ESSN 949-5005 JRNL DOI 10.4236/HEALTH.2018.108081 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 36107 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1961 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2609 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 138 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4253 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 68 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.62000 REMARK 3 B22 (A**2) : 4.04000 REMARK 3 B33 (A**2) : -4.56000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.74000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.172 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.123 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.570 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4460 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4388 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6035 ; 1.483 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10059 ; 0.985 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 563 ; 5.630 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 185 ;34.028 ;22.216 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 724 ;15.103 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;14.287 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4944 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1009 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6DTP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 6.2.6 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.22 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38108 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 35.675 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.26900 REMARK 200 R SYM FOR SHELL (I) : 0.26900 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.4.05 REMARK 200 STARTING MODEL: 1JTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MGCL2, PEG4000, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 47.55484 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.09400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 59.97955 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 47.55484 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.09400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 59.97955 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 PHE A 192 REMARK 465 MET A 193 REMARK 465 GLU A 194 REMARK 465 LYS A 195 REMARK 465 VAL A 196 REMARK 465 LEU A 197 REMARK 465 ASP A 286 REMARK 465 VAL A 287 REMARK 465 PRO A 288 REMARK 465 ALA A 289 REMARK 465 LYS A 290 REMARK 465 ALA A 291 REMARK 465 GLU A 292 REMARK 465 ALA A 293 REMARK 465 GLY A 294 REMARK 465 ALA A 295 REMARK 465 GLU A 296 REMARK 465 ALA A 297 REMARK 465 GLY A 298 REMARK 465 GLY A 299 REMARK 465 GLY A 300 REMARK 465 ALA A 301 REMARK 465 GLY A 302 REMARK 465 PRO A 303 REMARK 465 GLY A 304 REMARK 465 ALA A 305 REMARK 465 GLU A 306 REMARK 465 ASP A 307 REMARK 465 GLU A 308 REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 ARG A 311 REMARK 465 GLY A 312 REMARK 465 ALA A 313 REMARK 465 VAL A 314 REMARK 465 GLY A 315 REMARK 465 ASP A 316 REMARK 465 PRO A 317 REMARK 465 GLU A 318 REMARK 465 LEU A 319 REMARK 465 GLY A 320 REMARK 465 ASP A 321 REMARK 465 PRO A 322 REMARK 465 PRO A 323 REMARK 465 ALA A 324 REMARK 465 ALA A 325 REMARK 465 PRO A 326 REMARK 465 GLN A 327 REMARK 465 MET B 0 REMARK 465 ALA B 191 REMARK 465 PHE B 192 REMARK 465 MET B 193 REMARK 465 GLU B 194 REMARK 465 LYS B 195 REMARK 465 VAL B 196 REMARK 465 LEU B 197 REMARK 465 ASP B 286 REMARK 465 VAL B 287 REMARK 465 PRO B 288 REMARK 465 ALA B 289 REMARK 465 LYS B 290 REMARK 465 ALA B 291 REMARK 465 GLU B 292 REMARK 465 ALA B 293 REMARK 465 GLY B 294 REMARK 465 ALA B 295 REMARK 465 GLU B 296 REMARK 465 ALA B 297 REMARK 465 GLY B 298 REMARK 465 GLY B 299 REMARK 465 GLY B 300 REMARK 465 ALA B 301 REMARK 465 GLY B 302 REMARK 465 PRO B 303 REMARK 465 GLY B 304 REMARK 465 ALA B 305 REMARK 465 GLU B 306 REMARK 465 ASP B 307 REMARK 465 GLU B 308 REMARK 465 ALA B 309 REMARK 465 GLY B 310 REMARK 465 ARG B 311 REMARK 465 GLY B 312 REMARK 465 ALA B 313 REMARK 465 VAL B 314 REMARK 465 GLY B 315 REMARK 465 ASP B 316 REMARK 465 PRO B 317 REMARK 465 GLU B 318 REMARK 465 LEU B 319 REMARK 465 GLY B 320 REMARK 465 ASP B 321 REMARK 465 PRO B 322 REMARK 465 PRO B 323 REMARK 465 ALA B 324 REMARK 465 ALA B 325 REMARK 465 PRO B 326 REMARK 465 GLN B 327 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 50 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG B 136 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 LEU B 244 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 115 -62.87 -97.41 REMARK 500 THR A 190 -167.71 -113.49 REMARK 500 VAL B 115 -61.91 -105.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 EM9 A 408 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EM9 A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 405 DBREF 6DTP A 0 327 UNP P14061 DHB1_HUMAN 1 328 DBREF 6DTP B 0 327 UNP P14061 DHB1_HUMAN 1 328 SEQRES 1 A 328 MET ALA ARG THR VAL VAL LEU ILE THR GLY CYS SER SER SEQRES 2 A 328 GLY ILE GLY LEU HIS LEU ALA VAL ARG LEU ALA SER ASP SEQRES 3 A 328 PRO SER GLN SER PHE LYS VAL TYR ALA THR LEU ARG ASP SEQRES 4 A 328 LEU LYS THR GLN GLY ARG LEU TRP GLU ALA ALA ARG ALA SEQRES 5 A 328 LEU ALA CYS PRO PRO GLY SER LEU GLU THR LEU GLN LEU SEQRES 6 A 328 ASP VAL ARG ASP SER LYS SER VAL ALA ALA ALA ARG GLU SEQRES 7 A 328 ARG VAL THR GLU GLY ARG VAL ASP VAL LEU VAL CYS ASN SEQRES 8 A 328 ALA GLY LEU GLY LEU LEU GLY PRO LEU GLU ALA LEU GLY SEQRES 9 A 328 GLU ASP ALA VAL ALA SER VAL LEU ASP VAL ASN VAL VAL SEQRES 10 A 328 GLY THR VAL ARG MET LEU GLN ALA PHE LEU PRO ASP MET SEQRES 11 A 328 LYS ARG ARG GLY SER GLY ARG VAL LEU VAL THR GLY SER SEQRES 12 A 328 VAL GLY GLY LEU MET GLY LEU PRO PHE ASN ASP VAL TYR SEQRES 13 A 328 CYS ALA SER LYS PHE ALA LEU GLU GLY LEU CYS GLU SER SEQRES 14 A 328 LEU ALA VAL LEU LEU LEU PRO PHE GLY VAL HIS LEU SER SEQRES 15 A 328 LEU ILE GLU CYS GLY PRO VAL HIS THR ALA PHE MET GLU SEQRES 16 A 328 LYS VAL LEU GLY SER PRO GLU GLU VAL LEU ASP ARG THR SEQRES 17 A 328 ASP ILE HIS THR PHE HIS ARG PHE TYR GLN TYR LEU ALA SEQRES 18 A 328 HIS SER LYS GLN VAL PHE ARG GLU ALA ALA GLN ASN PRO SEQRES 19 A 328 GLU GLU VAL ALA GLU VAL PHE LEU THR ALA LEU ARG ALA SEQRES 20 A 328 PRO LYS PRO THR LEU ARG TYR PHE THR THR GLU ARG PHE SEQRES 21 A 328 LEU PRO LEU LEU ARG MET ARG LEU ASP ASP PRO SER GLY SEQRES 22 A 328 SER ASN TYR VAL THR ALA MET HIS ARG GLU VAL PHE GLY SEQRES 23 A 328 ASP VAL PRO ALA LYS ALA GLU ALA GLY ALA GLU ALA GLY SEQRES 24 A 328 GLY GLY ALA GLY PRO GLY ALA GLU ASP GLU ALA GLY ARG SEQRES 25 A 328 GLY ALA VAL GLY ASP PRO GLU LEU GLY ASP PRO PRO ALA SEQRES 26 A 328 ALA PRO GLN SEQRES 1 B 328 MET ALA ARG THR VAL VAL LEU ILE THR GLY CYS SER SER SEQRES 2 B 328 GLY ILE GLY LEU HIS LEU ALA VAL ARG LEU ALA SER ASP SEQRES 3 B 328 PRO SER GLN SER PHE LYS VAL TYR ALA THR LEU ARG ASP SEQRES 4 B 328 LEU LYS THR GLN GLY ARG LEU TRP GLU ALA ALA ARG ALA SEQRES 5 B 328 LEU ALA CYS PRO PRO GLY SER LEU GLU THR LEU GLN LEU SEQRES 6 B 328 ASP VAL ARG ASP SER LYS SER VAL ALA ALA ALA ARG GLU SEQRES 7 B 328 ARG VAL THR GLU GLY ARG VAL ASP VAL LEU VAL CYS ASN SEQRES 8 B 328 ALA GLY LEU GLY LEU LEU GLY PRO LEU GLU ALA LEU GLY SEQRES 9 B 328 GLU ASP ALA VAL ALA SER VAL LEU ASP VAL ASN VAL VAL SEQRES 10 B 328 GLY THR VAL ARG MET LEU GLN ALA PHE LEU PRO ASP MET SEQRES 11 B 328 LYS ARG ARG GLY SER GLY ARG VAL LEU VAL THR GLY SER SEQRES 12 B 328 VAL GLY GLY LEU MET GLY LEU PRO PHE ASN ASP VAL TYR SEQRES 13 B 328 CYS ALA SER LYS PHE ALA LEU GLU GLY LEU CYS GLU SER SEQRES 14 B 328 LEU ALA VAL LEU LEU LEU PRO PHE GLY VAL HIS LEU SER SEQRES 15 B 328 LEU ILE GLU CYS GLY PRO VAL HIS THR ALA PHE MET GLU SEQRES 16 B 328 LYS VAL LEU GLY SER PRO GLU GLU VAL LEU ASP ARG THR SEQRES 17 B 328 ASP ILE HIS THR PHE HIS ARG PHE TYR GLN TYR LEU ALA SEQRES 18 B 328 HIS SER LYS GLN VAL PHE ARG GLU ALA ALA GLN ASN PRO SEQRES 19 B 328 GLU GLU VAL ALA GLU VAL PHE LEU THR ALA LEU ARG ALA SEQRES 20 B 328 PRO LYS PRO THR LEU ARG TYR PHE THR THR GLU ARG PHE SEQRES 21 B 328 LEU PRO LEU LEU ARG MET ARG LEU ASP ASP PRO SER GLY SEQRES 22 B 328 SER ASN TYR VAL THR ALA MET HIS ARG GLU VAL PHE GLY SEQRES 23 B 328 ASP VAL PRO ALA LYS ALA GLU ALA GLY ALA GLU ALA GLY SEQRES 24 B 328 GLY GLY ALA GLY PRO GLY ALA GLU ASP GLU ALA GLY ARG SEQRES 25 B 328 GLY ALA VAL GLY ASP PRO GLU LEU GLY ASP PRO PRO ALA SEQRES 26 B 328 ALA PRO GLN HET GOL A 401 6 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET EDO A 406 4 HET EDO A 407 4 HET EM9 A 408 22 HET PGE A 409 10 HET GOL B 401 6 HET GOL B 402 6 HET EDO B 403 4 HET EDO B 404 4 HET PEG B 405 7 HETNAM GOL GLYCEROL HETNAM EDO 1,2-ETHANEDIOL HETNAM EM9 N-BUTYL-11-[(7ALPHA,9BETA,13ALPHA,14BETA,16ALPHA, HETNAM 2 EM9 17ALPHA)-16-CHLORO-3,17-DIHYDROXYESTRA-1,3,5(10)- HETNAM 3 EM9 TRIEN-7-YL]-N-METHYLUNDECANAMIDE HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 GOL 7(C3 H8 O3) FORMUL 8 EDO 4(C2 H6 O2) FORMUL 10 EM9 C34 H54 CL N O3 FORMUL 11 PGE C6 H14 O4 FORMUL 16 PEG C4 H10 O3 FORMUL 17 HOH *68(H2 O) HELIX 1 AA1 SER A 12 SER A 24 1 13 HELIX 2 AA2 ASP A 38 THR A 41 5 4 HELIX 3 AA3 GLN A 42 LEU A 52 1 11 HELIX 4 AA4 ASP A 68 VAL A 79 1 12 HELIX 5 AA5 PRO A 98 LEU A 102 5 5 HELIX 6 AA6 GLY A 103 VAL A 115 1 13 HELIX 7 AA7 VAL A 115 GLY A 133 1 19 HELIX 8 AA8 GLY A 144 LEU A 146 5 3 HELIX 9 AA9 ASN A 152 LEU A 174 1 23 HELIX 10 AB1 SER A 199 ARG A 206 1 8 HELIX 11 AB2 ASP A 208 ALA A 230 1 23 HELIX 12 AB3 ASN A 232 ALA A 246 1 15 HELIX 13 AB4 PHE A 259 ASP A 269 1 11 HELIX 14 AB5 GLY A 272 GLY A 285 1 14 HELIX 15 AB6 SER B 12 SER B 24 1 13 HELIX 16 AB7 ASP B 38 THR B 41 5 4 HELIX 17 AB8 GLN B 42 LEU B 52 1 11 HELIX 18 AB9 ASP B 68 ARG B 78 1 11 HELIX 19 AC1 PRO B 98 LEU B 102 5 5 HELIX 20 AC2 GLY B 103 VAL B 115 1 13 HELIX 21 AC3 VAL B 115 GLY B 133 1 19 HELIX 22 AC4 GLY B 144 LEU B 146 5 3 HELIX 23 AC5 ASN B 152 LEU B 174 1 23 HELIX 24 AC6 SER B 199 ARG B 206 1 8 HELIX 25 AC7 ASP B 208 ALA B 230 1 23 HELIX 26 AC8 ASN B 232 ALA B 246 1 15 HELIX 27 AC9 PHE B 259 ASP B 268 1 10 HELIX 28 AD1 GLY B 272 GLY B 285 1 14 SHEET 1 AA1 7 LEU A 59 GLN A 63 0 SHEET 2 AA1 7 PHE A 30 LEU A 36 1 N ALA A 34 O GLU A 60 SHEET 3 AA1 7 THR A 3 ILE A 7 1 N VAL A 5 O TYR A 33 SHEET 4 AA1 7 VAL A 86 CYS A 89 1 O VAL A 88 N LEU A 6 SHEET 5 AA1 7 GLY A 135 SER A 142 1 O LEU A 138 N LEU A 87 SHEET 6 AA1 7 VAL A 178 CYS A 185 1 O ILE A 183 N VAL A 139 SHEET 7 AA1 7 ARG A 252 PHE A 254 1 O TYR A 253 N GLU A 184 SHEET 1 AA2 7 LEU B 59 GLN B 63 0 SHEET 2 AA2 7 PHE B 30 LEU B 36 1 N ALA B 34 O GLU B 60 SHEET 3 AA2 7 THR B 3 ILE B 7 1 N VAL B 5 O TYR B 33 SHEET 4 AA2 7 VAL B 86 CYS B 89 1 O VAL B 88 N LEU B 6 SHEET 5 AA2 7 GLY B 135 SER B 142 1 O LEU B 138 N LEU B 87 SHEET 6 AA2 7 VAL B 178 CYS B 185 1 O ILE B 183 N GLY B 141 SHEET 7 AA2 7 ARG B 252 PHE B 254 1 O TYR B 253 N GLU B 184 SITE 1 AC1 7 PRO A 55 PRO A 56 GLY A 57 SER A 58 SITE 2 AC1 7 LEU A 59 ALA A 230 GLU A 235 SITE 1 AC2 10 GLY A 145 PHE A 160 ARG A 266 GOL A 404 SITE 2 AC2 10 HOH A 514 GLY B 145 LEU B 146 PHE B 160 SITE 3 AC2 10 ARG B 266 HOH B 506 SITE 1 AC3 7 ARG A 50 VAL A 239 THR A 242 TYR A 253 SITE 2 AC3 7 PHE A 254 HOH A 502 HOH A 505 SITE 1 AC4 8 ARG A 266 ASP A 269 PRO A 270 GOL A 402 SITE 2 AC4 8 LEU B 146 ARG B 252 HOH B 506 HOH B 518 SITE 1 AC5 9 CYS A 89 ASN A 90 ALA A 91 GLY A 92 SITE 2 AC5 9 ASN A 114 THR A 118 LYS A 159 LEU A 162 SITE 3 AC5 9 HOH A 508 SITE 1 AC6 5 ARG A 252 HOH A 507 HOH A 514 ARG B 266 SITE 2 AC6 5 PRO B 270 SITE 1 AC7 3 ASP A 25 SER A 27 ARG A 245 SITE 1 AC8 13 SER A 142 VAL A 143 LEU A 149 TYR A 155 SITE 2 AC8 13 GLY A 186 PRO A 187 TYR A 218 HIS A 221 SITE 3 AC8 13 SER A 222 PHE A 226 PHE A 259 MET A 279 SITE 4 AC8 13 GLU A 282 SITE 1 AC9 9 ALA A 170 LEU A 173 LEU A 174 VAL A 178 SITE 2 AC9 9 LEU A 180 PRO A 249 THR A 250 LEU A 251 SITE 3 AC9 9 THR B 277 SITE 1 AD1 3 GLU B 47 PHE B 254 THR B 255 SITE 1 AD2 5 TRP B 46 ARG B 50 ALA B 230 ASN B 232 SITE 2 AD2 5 GLU B 235 SITE 1 AD3 2 TYR B 216 LYS B 223 SITE 1 AD4 2 PHE B 125 ASP B 128 SITE 1 AD5 3 LYS A 130 PRO A 175 ARG B 214 CRYST1 120.761 42.188 122.671 90.00 102.07 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008281 0.000000 0.001771 0.00000 SCALE2 0.000000 0.023704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008336 0.00000