HEADER HYDROLASE, TRANSFERASE/INHIBITOR 18-JUN-18 6DTX TITLE WILDTYPE HIV-1 REVERSE TRANSCRIPTASE IN COMPLEX WITH JLJ 578 COMPND MOL_ID: 1; COMPND 2 MOLECULE: REVERSE TRANSCRIPTASE/RIBONUCLEASE H; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P66 RT; COMPND 5 EC: 2.7.7.49, 2.7.7.7, 3.1.26.13, 3.1.13.2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P51 RT; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 3 SUBTYPE B; SOURCE 4 ORGANISM_COMMON: ISOLATE BH10; SOURCE 5 ORGANISM_TAXID: 11678; SOURCE 6 GENE: GAG-POL; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 GROUP M SOURCE 12 SUBTYPE B; SOURCE 13 ORGANISM_COMMON: ISOLATE BH10; SOURCE 14 ORGANISM_TAXID: 11678; SOURCE 15 GENE: GAG-POL; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD KEYWDS HIV-1, REVERSE TRANSCRIPTASE, INHIBITOR, HYDROLASE, TRANSFERASE- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.SASAKI,Z.T.K.GANNAM,K.S.ANDERSON,W.L.JORGENSEN,W.LEE REVDAT 4 11-OCT-23 6DTX 1 REMARK REVDAT 3 01-JAN-20 6DTX 1 REMARK REVDAT 2 28-AUG-19 6DTX 1 JRNL REVDAT 1 31-JUL-19 6DTX 0 JRNL AUTH T.SASAKI,Z.T.K.GANNAM,S.N.KUDALKAR,K.M.FREY,W.G.LEE, JRNL AUTH 2 K.A.SPASOV,W.L.JORGENSEN,K.S.ANDERSON JRNL TITL MOLECULAR AND CELLULAR STUDIES EVALUATING A POTENT JRNL TITL 2 2-CYANOINDOLIZINE CATECHOL DIETHER NNRTI TARGETING WILDTYPE JRNL TITL 3 AND Y181C MUTANT HIV-1 REVERSE TRANSCRIPTASE. JRNL REF BIOORG.MED.CHEM.LETT. V. 29 2182 2019 JRNL REFN ESSN 1464-3405 JRNL PMID 31281023 JRNL DOI 10.1016/J.BMCL.2019.06.047 REMARK 2 REMARK 2 RESOLUTION. 3.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 21928 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1097 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5999 - 6.6465 0.99 2793 148 0.1909 0.2090 REMARK 3 2 6.6465 - 5.2787 1.00 2724 143 0.2254 0.2719 REMARK 3 3 5.2787 - 4.6123 1.00 2721 143 0.1693 0.2106 REMARK 3 4 4.6123 - 4.1910 1.00 2705 142 0.1704 0.2476 REMARK 3 5 4.1910 - 3.8908 1.00 2696 142 0.1906 0.2160 REMARK 3 6 3.8908 - 3.6616 1.00 2711 143 0.2111 0.2729 REMARK 3 7 3.6616 - 3.4783 1.00 2661 141 0.2309 0.2944 REMARK 3 8 3.4783 - 3.3269 0.68 1820 95 0.2605 0.3430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 8105 REMARK 3 ANGLE : 0.454 11014 REMARK 3 CHIRALITY : 0.041 1190 REMARK 3 PLANARITY : 0.004 1384 REMARK 3 DIHEDRAL : 8.942 4881 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 294.3755 -1.4915 40.0428 REMARK 3 T TENSOR REMARK 3 T11: 0.8593 T22: 1.0344 REMARK 3 T33: 0.6555 T12: 0.1752 REMARK 3 T13: -0.0432 T23: 0.0467 REMARK 3 L TENSOR REMARK 3 L11: 5.0251 L22: 5.1536 REMARK 3 L33: 4.0422 L12: -1.1305 REMARK 3 L13: 0.7100 L23: -1.5013 REMARK 3 S TENSOR REMARK 3 S11: -0.8486 S12: -1.3000 S13: -0.4073 REMARK 3 S21: 0.8713 S22: 0.4840 S23: -0.0074 REMARK 3 S31: -0.6100 S32: 0.4813 S33: 0.2541 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 104 ) REMARK 3 ORIGIN FOR THE GROUP (A): 278.1670 -9.9494 35.0536 REMARK 3 T TENSOR REMARK 3 T11: 0.8788 T22: 1.1167 REMARK 3 T33: 1.0017 T12: 0.3500 REMARK 3 T13: 0.1345 T23: -0.0191 REMARK 3 L TENSOR REMARK 3 L11: 3.3203 L22: 3.1705 REMARK 3 L33: 2.1771 L12: 3.2081 REMARK 3 L13: 1.8683 L23: 0.1577 REMARK 3 S TENSOR REMARK 3 S11: -0.6733 S12: -0.7920 S13: 0.0824 REMARK 3 S21: -0.8038 S22: -0.1308 S23: -0.2253 REMARK 3 S31: -0.1998 S32: 0.2009 S33: 0.6212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 105 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 286.0186 -13.0671 26.5967 REMARK 3 T TENSOR REMARK 3 T11: 0.7675 T22: 0.7972 REMARK 3 T33: 0.7720 T12: 0.3090 REMARK 3 T13: 0.0848 T23: 0.0454 REMARK 3 L TENSOR REMARK 3 L11: 5.0514 L22: 3.2869 REMARK 3 L33: 3.4543 L12: 1.4861 REMARK 3 L13: 0.6764 L23: 0.7608 REMARK 3 S TENSOR REMARK 3 S11: -0.3295 S12: -0.3648 S13: -0.7170 REMARK 3 S21: 0.4417 S22: 0.2900 S23: -0.3009 REMARK 3 S31: 0.7607 S32: 0.7134 S33: -0.0339 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 347 ) REMARK 3 ORIGIN FOR THE GROUP (A): 255.1817 -21.5035 37.2683 REMARK 3 T TENSOR REMARK 3 T11: 1.3958 T22: 0.8097 REMARK 3 T33: 1.1397 T12: 0.0780 REMARK 3 T13: 0.2832 T23: 0.1947 REMARK 3 L TENSOR REMARK 3 L11: 3.7379 L22: 0.1214 REMARK 3 L33: 1.7541 L12: 0.9576 REMARK 3 L13: -1.0801 L23: -0.6893 REMARK 3 S TENSOR REMARK 3 S11: 0.0387 S12: -0.8339 S13: -0.6617 REMARK 3 S21: 0.0873 S22: -0.0021 S23: 0.0982 REMARK 3 S31: 0.4911 S32: 0.1923 S33: -0.0713 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 348 THROUGH 382 ) REMARK 3 ORIGIN FOR THE GROUP (A): 245.1743 -10.3974 28.7553 REMARK 3 T TENSOR REMARK 3 T11: 1.0461 T22: 0.6643 REMARK 3 T33: 0.9799 T12: -0.0856 REMARK 3 T13: 0.1309 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 2.4058 L22: 2.7548 REMARK 3 L33: 4.6568 L12: -1.0681 REMARK 3 L13: -2.4381 L23: -0.4754 REMARK 3 S TENSOR REMARK 3 S11: -0.1294 S12: -1.1633 S13: 0.2474 REMARK 3 S21: 0.7689 S22: 0.3564 S23: 0.0003 REMARK 3 S31: -0.6529 S32: 0.2258 S33: -0.1869 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 383 THROUGH 487 ) REMARK 3 ORIGIN FOR THE GROUP (A): 226.1667 -2.0565 32.9173 REMARK 3 T TENSOR REMARK 3 T11: 0.7547 T22: 1.0291 REMARK 3 T33: 0.9790 T12: -0.1048 REMARK 3 T13: -0.0342 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 4.7467 L22: 1.9049 REMARK 3 L33: 2.6906 L12: -1.1796 REMARK 3 L13: -3.2911 L23: 0.6946 REMARK 3 S TENSOR REMARK 3 S11: -0.0924 S12: -0.1373 S13: 0.2746 REMARK 3 S21: -0.1362 S22: 0.1710 S23: 0.0160 REMARK 3 S31: 0.2891 S32: -0.3737 S33: -0.0643 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 488 THROUGH 548 ) REMARK 3 ORIGIN FOR THE GROUP (A): 220.7079 3.3783 37.2359 REMARK 3 T TENSOR REMARK 3 T11: 0.6396 T22: 0.7428 REMARK 3 T33: 1.0477 T12: 0.0302 REMARK 3 T13: 0.1447 T23: -0.0276 REMARK 3 L TENSOR REMARK 3 L11: 8.0307 L22: 8.6520 REMARK 3 L33: 7.1799 L12: 1.4705 REMARK 3 L13: -0.4047 L23: -1.1563 REMARK 3 S TENSOR REMARK 3 S11: 0.1027 S12: 0.7312 S13: 0.7516 REMARK 3 S21: -0.9491 S22: -0.7401 S23: 0.3692 REMARK 3 S31: 0.5558 S32: -0.3771 S33: 0.5578 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 266.7780 7.0636 13.1006 REMARK 3 T TENSOR REMARK 3 T11: 0.5808 T22: 0.6121 REMARK 3 T33: 0.4331 T12: -0.0367 REMARK 3 T13: -0.0436 T23: 0.0274 REMARK 3 L TENSOR REMARK 3 L11: 4.0821 L22: 8.0271 REMARK 3 L33: 4.0000 L12: -0.4652 REMARK 3 L13: -0.0858 L23: 0.4333 REMARK 3 S TENSOR REMARK 3 S11: -0.2385 S12: -0.1692 S13: 0.3258 REMARK 3 S21: 0.4329 S22: 0.3201 S23: 0.0881 REMARK 3 S31: -0.0960 S32: 0.2043 S33: -0.0653 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 244.2307 19.4322 10.4275 REMARK 3 T TENSOR REMARK 3 T11: 0.8758 T22: 0.7815 REMARK 3 T33: 0.8777 T12: 0.0339 REMARK 3 T13: -0.0409 T23: 0.1642 REMARK 3 L TENSOR REMARK 3 L11: 2.2792 L22: 0.9103 REMARK 3 L33: 1.3823 L12: 0.4205 REMARK 3 L13: -1.0144 L23: -0.5188 REMARK 3 S TENSOR REMARK 3 S11: 0.2500 S12: 0.3397 S13: 0.6730 REMARK 3 S21: 0.0179 S22: 0.1729 S23: 0.3146 REMARK 3 S31: -0.3861 S32: -0.3877 S33: -0.4593 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 343 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 242.9846 10.4434 15.9570 REMARK 3 T TENSOR REMARK 3 T11: 0.8813 T22: 0.7079 REMARK 3 T33: 0.5455 T12: 0.0451 REMARK 3 T13: 0.0223 T23: 0.0890 REMARK 3 L TENSOR REMARK 3 L11: 6.7212 L22: 9.3109 REMARK 3 L33: 3.1814 L12: 1.0335 REMARK 3 L13: -2.2734 L23: 0.1479 REMARK 3 S TENSOR REMARK 3 S11: -0.1404 S12: 0.2778 S13: -0.3451 REMARK 3 S21: 0.6715 S22: 0.4420 S23: 0.5988 REMARK 3 S31: -0.2164 S32: -0.8974 S33: -0.2634 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DTX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235232. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21940 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.327 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 22.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.54200 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4MFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, MAGNESIUM REMARK 280 SULFATE, SPERMINE, MES (PH 6), RILPIVIRINE., VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 111.58300 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.64450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 111.58300 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.64450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 VAL A 0 REMARK 465 PRO A 1 REMARK 465 ILE A 2 REMARK 465 ASP A 549 REMARK 465 LYS A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 SER A 553 REMARK 465 ALA A 554 REMARK 465 GLY A 555 REMARK 465 PRO B 1 REMARK 465 ILE B 2 REMARK 465 LYS B 66 REMARK 465 ASP B 67 REMARK 465 HIS B 221 REMARK 465 GLN B 222 REMARK 465 LYS B 223 REMARK 465 GLU B 224 REMARK 465 PRO B 225 REMARK 465 PRO B 226 REMARK 465 PHE B 227 REMARK 465 LEU B 228 REMARK 465 TRP B 229 REMARK 465 MET B 230 REMARK 465 GLY B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 25 -156.74 -80.67 REMARK 500 LEU A 26 119.54 66.58 REMARK 500 PRO A 52 49.48 -76.60 REMARK 500 SER A 68 4.51 -67.24 REMARK 500 ASN A 136 76.66 -65.77 REMARK 500 ASN A 137 44.50 -108.39 REMARK 500 GLU A 138 24.67 49.66 REMARK 500 MET A 184 -122.23 50.26 REMARK 500 PRO A 217 108.42 -54.60 REMARK 500 LYS A 220 -130.93 54.04 REMARK 500 GLN A 222 -45.84 80.36 REMARK 500 PHE A 227 74.43 61.80 REMARK 500 VAL A 276 11.13 -141.31 REMARK 500 ALA A 288 162.98 173.70 REMARK 500 PRO A 412 -165.60 -70.97 REMARK 500 THR B 84 -44.59 -133.14 REMARK 500 MET B 184 -75.19 67.55 REMARK 500 LYS B 347 54.79 -116.77 REMARK 500 ASN B 418 -3.35 -141.01 REMARK 500 PRO B 421 -151.63 -80.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue H9Y A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6DTW RELATED DB: PDB REMARK 900 6DTW CONTAINS THE Y181C MUTANT OF HIV RT IN COMPLEX WITH THE SAME REMARK 900 COMPOUND (JLJ578) DBREF 6DTX A 1 555 UNP P03366 POL_HV1B1 600 1154 DBREF 6DTX B 1 428 UNP P03366 POL_HV1B1 600 1027 SEQADV 6DTX MET A -1 UNP P03366 EXPRESSION TAG SEQADV 6DTX VAL A 0 UNP P03366 EXPRESSION TAG SEQADV 6DTX ALA A 172 UNP P03366 LYS 771 ENGINEERED MUTATION SEQADV 6DTX ALA A 173 UNP P03366 LYS 772 ENGINEERED MUTATION SEQADV 6DTX SER A 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQADV 6DTX SER B 280 UNP P03366 CYS 879 ENGINEERED MUTATION SEQRES 1 A 557 MET VAL PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS SEQRES 2 A 557 LEU LYS PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP SEQRES 3 A 557 PRO LEU THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE SEQRES 4 A 557 CYS THR GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE SEQRES 5 A 557 GLY PRO GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE SEQRES 6 A 557 LYS LYS LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP SEQRES 7 A 557 PHE ARG GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU SEQRES 8 A 557 VAL GLN LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS SEQRES 9 A 557 LYS LYS SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR SEQRES 10 A 557 PHE SER VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR SEQRES 11 A 557 ALA PHE THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY SEQRES 12 A 557 ILE ARG TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS SEQRES 13 A 557 GLY SER PRO ALA ILE PHE GLN SER SER MET THR LYS ILE SEQRES 14 A 557 LEU GLU PRO PHE ALA ALA GLN ASN PRO ASP ILE VAL ILE SEQRES 15 A 557 TYR GLN TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU SEQRES 16 A 557 GLU ILE GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG SEQRES 17 A 557 GLN HIS LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS SEQRES 18 A 557 LYS HIS GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR SEQRES 19 A 557 GLU LEU HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL SEQRES 20 A 557 LEU PRO GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN SEQRES 21 A 557 LYS LEU VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR SEQRES 22 A 557 PRO GLY ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG SEQRES 23 A 557 GLY THR LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU SEQRES 24 A 557 GLU ALA GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU SEQRES 25 A 557 LYS GLU PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS SEQRES 26 A 557 ASP LEU ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN SEQRES 27 A 557 TRP THR TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU SEQRES 28 A 557 LYS THR GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR SEQRES 29 A 557 ASN ASP VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE SEQRES 30 A 557 THR THR GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS SEQRES 31 A 557 PHE LYS LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP SEQRES 32 A 557 TRP THR GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP SEQRES 33 A 557 GLU PHE VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR SEQRES 34 A 557 GLN LEU GLU LYS GLU PRO ILE VAL GLY ALA GLU THR PHE SEQRES 35 A 557 TYR VAL ASP GLY ALA ALA ASN ARG GLU THR LYS LEU GLY SEQRES 36 A 557 LYS ALA GLY TYR VAL THR ASN LYS GLY ARG GLN LYS VAL SEQRES 37 A 557 VAL PRO LEU THR ASN THR THR ASN GLN LYS THR GLU LEU SEQRES 38 A 557 GLN ALA ILE TYR LEU ALA LEU GLN ASP SER GLY LEU GLU SEQRES 39 A 557 VAL ASN ILE VAL THR ASP SER GLN TYR ALA LEU GLY ILE SEQRES 40 A 557 ILE GLN ALA GLN PRO ASP LYS SER GLU SER GLU LEU VAL SEQRES 41 A 557 ASN GLN ILE ILE GLU GLN LEU ILE LYS LYS GLU LYS VAL SEQRES 42 A 557 TYR LEU ALA TRP VAL PRO ALA HIS LYS GLY ILE GLY GLY SEQRES 43 A 557 ASN GLU GLN VAL ASP LYS LEU VAL SER ALA GLY SEQRES 1 B 428 PRO ILE SER PRO ILE GLU THR VAL PRO VAL LYS LEU LYS SEQRES 2 B 428 PRO GLY MET ASP GLY PRO LYS VAL LYS GLN TRP PRO LEU SEQRES 3 B 428 THR GLU GLU LYS ILE LYS ALA LEU VAL GLU ILE CYS THR SEQRES 4 B 428 GLU MET GLU LYS GLU GLY LYS ILE SER LYS ILE GLY PRO SEQRES 5 B 428 GLU ASN PRO TYR ASN THR PRO VAL PHE ALA ILE LYS LYS SEQRES 6 B 428 LYS ASP SER THR LYS TRP ARG LYS LEU VAL ASP PHE ARG SEQRES 7 B 428 GLU LEU ASN LYS ARG THR GLN ASP PHE TRP GLU VAL GLN SEQRES 8 B 428 LEU GLY ILE PRO HIS PRO ALA GLY LEU LYS LYS LYS LYS SEQRES 9 B 428 SER VAL THR VAL LEU ASP VAL GLY ASP ALA TYR PHE SER SEQRES 10 B 428 VAL PRO LEU ASP GLU ASP PHE ARG LYS TYR THR ALA PHE SEQRES 11 B 428 THR ILE PRO SER ILE ASN ASN GLU THR PRO GLY ILE ARG SEQRES 12 B 428 TYR GLN TYR ASN VAL LEU PRO GLN GLY TRP LYS GLY SER SEQRES 13 B 428 PRO ALA ILE PHE GLN SER SER MET THR LYS ILE LEU GLU SEQRES 14 B 428 PRO PHE LYS LYS GLN ASN PRO ASP ILE VAL ILE TYR GLN SEQRES 15 B 428 TYR MET ASP ASP LEU TYR VAL GLY SER ASP LEU GLU ILE SEQRES 16 B 428 GLY GLN HIS ARG THR LYS ILE GLU GLU LEU ARG GLN HIS SEQRES 17 B 428 LEU LEU ARG TRP GLY LEU THR THR PRO ASP LYS LYS HIS SEQRES 18 B 428 GLN LYS GLU PRO PRO PHE LEU TRP MET GLY TYR GLU LEU SEQRES 19 B 428 HIS PRO ASP LYS TRP THR VAL GLN PRO ILE VAL LEU PRO SEQRES 20 B 428 GLU LYS ASP SER TRP THR VAL ASN ASP ILE GLN LYS LEU SEQRES 21 B 428 VAL GLY LYS LEU ASN TRP ALA SER GLN ILE TYR PRO GLY SEQRES 22 B 428 ILE LYS VAL ARG GLN LEU SER LYS LEU LEU ARG GLY THR SEQRES 23 B 428 LYS ALA LEU THR GLU VAL ILE PRO LEU THR GLU GLU ALA SEQRES 24 B 428 GLU LEU GLU LEU ALA GLU ASN ARG GLU ILE LEU LYS GLU SEQRES 25 B 428 PRO VAL HIS GLY VAL TYR TYR ASP PRO SER LYS ASP LEU SEQRES 26 B 428 ILE ALA GLU ILE GLN LYS GLN GLY GLN GLY GLN TRP THR SEQRES 27 B 428 TYR GLN ILE TYR GLN GLU PRO PHE LYS ASN LEU LYS THR SEQRES 28 B 428 GLY LYS TYR ALA ARG MET ARG GLY ALA HIS THR ASN ASP SEQRES 29 B 428 VAL LYS GLN LEU THR GLU ALA VAL GLN LYS ILE THR THR SEQRES 30 B 428 GLU SER ILE VAL ILE TRP GLY LYS THR PRO LYS PHE LYS SEQRES 31 B 428 LEU PRO ILE GLN LYS GLU THR TRP GLU THR TRP TRP THR SEQRES 32 B 428 GLU TYR TRP GLN ALA THR TRP ILE PRO GLU TRP GLU PHE SEQRES 33 B 428 VAL ASN THR PRO PRO LEU VAL LYS LEU TRP TYR GLN HET H9Y A 601 31 HET GOL B 501 6 HETNAM H9Y 8-{2-[2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL) HETNAM 2 H9Y ETHOXY]-4-FLUOROPHENOXY}-6-FLUOROINDOLIZINE-2- HETNAM 3 H9Y CARBONITRILE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 H9Y C21 H14 F2 N4 O4 FORMUL 4 GOL C3 H8 O3 HELIX 1 AA1 THR A 27 GLU A 44 1 18 HELIX 2 AA2 PHE A 77 LYS A 82 1 6 HELIX 3 AA3 HIS A 96 LEU A 100 5 5 HELIX 4 AA4 ALA A 114 VAL A 118 5 5 HELIX 5 AA5 ASP A 121 ALA A 129 5 9 HELIX 6 AA6 GLY A 155 ALA A 173 1 19 HELIX 7 AA7 GLU A 194 TRP A 212 1 19 HELIX 8 AA8 THR A 253 SER A 268 1 16 HELIX 9 AA9 VAL A 276 LEU A 283 1 8 HELIX 10 AB1 THR A 296 GLU A 312 1 17 HELIX 11 AB2 ASN A 363 TRP A 383 1 21 HELIX 12 AB3 GLN A 394 TYR A 405 1 12 HELIX 13 AB4 THR A 473 ASP A 488 1 16 HELIX 14 AB5 SER A 499 ALA A 508 1 10 HELIX 15 AB6 SER A 515 LYS A 528 1 14 HELIX 16 AB7 THR B 27 GLU B 44 1 18 HELIX 17 AB8 PHE B 77 LEU B 92 1 16 HELIX 18 AB9 GLY B 99 LYS B 103 5 5 HELIX 19 AC1 GLY B 112 SER B 117 5 6 HELIX 20 AC2 ASP B 121 ALA B 129 5 9 HELIX 21 AC3 SER B 134 GLU B 138 5 5 HELIX 22 AC4 LYS B 154 PHE B 160 1 7 HELIX 23 AC5 PHE B 160 ASN B 175 1 16 HELIX 24 AC6 GLU B 194 ARG B 211 1 18 HELIX 25 AC7 HIS B 235 TRP B 239 5 5 HELIX 26 AC8 THR B 253 SER B 268 1 16 HELIX 27 AC9 VAL B 276 LEU B 283 1 8 HELIX 28 AD1 THR B 296 ILE B 309 1 14 HELIX 29 AD2 LEU B 310 GLU B 312 5 3 HELIX 30 AD3 ASN B 363 GLY B 384 1 22 HELIX 31 AD4 GLN B 394 TRP B 402 1 9 HELIX 32 AD5 LEU B 422 TYR B 427 1 6 SHEET 1 AA1 2 VAL A 60 ILE A 63 0 SHEET 2 AA1 2 ARG A 72 VAL A 75 -1 O LEU A 74 N PHE A 61 SHEET 1 AA2 3 SER A 105 ASP A 110 0 SHEET 2 AA2 3 ASP A 186 SER A 191 -1 O VAL A 189 N THR A 107 SHEET 3 AA2 3 VAL A 179 TYR A 183 -1 N VAL A 179 O GLY A 190 SHEET 1 AA3 2 PHE A 130 ILE A 132 0 SHEET 2 AA3 2 ILE A 142 TYR A 144 -1 O TYR A 144 N PHE A 130 SHEET 1 AA4 2 TYR A 232 HIS A 235 0 SHEET 2 AA4 2 LYS A 238 VAL A 241 -1 O THR A 240 N GLU A 233 SHEET 1 AA5 5 ASN A 348 ALA A 355 0 SHEET 2 AA5 5 GLN A 336 TYR A 342 -1 N ILE A 341 O LYS A 350 SHEET 3 AA5 5 ILE A 326 LYS A 331 -1 N GLN A 330 O THR A 338 SHEET 4 AA5 5 LYS A 388 LEU A 391 1 O LYS A 388 N ALA A 327 SHEET 5 AA5 5 TRP A 414 PHE A 416 1 O GLU A 415 N PHE A 389 SHEET 1 AA6 2 HIS A 361 THR A 362 0 SHEET 2 AA6 2 LYS A 512 SER A 513 -1 O LYS A 512 N THR A 362 SHEET 1 AA7 5 GLN A 464 THR A 470 0 SHEET 2 AA7 5 LEU A 452 THR A 459 -1 N ALA A 455 O VAL A 467 SHEET 3 AA7 5 GLU A 438 ALA A 445 -1 N TYR A 441 O VAL A 458 SHEET 4 AA7 5 GLU A 492 THR A 497 1 O ASN A 494 N PHE A 440 SHEET 5 AA7 5 LYS A 530 TRP A 535 1 O ALA A 534 N ILE A 495 SHEET 1 AA8 3 ILE B 47 LYS B 49 0 SHEET 2 AA8 3 ILE B 142 TYR B 146 -1 O GLN B 145 N SER B 48 SHEET 3 AA8 3 PHE B 130 ILE B 132 -1 N ILE B 132 O ILE B 142 SHEET 1 AA9 2 VAL B 60 ILE B 63 0 SHEET 2 AA9 2 ARG B 72 VAL B 75 -1 O ARG B 72 N ILE B 63 SHEET 1 AB1 4 VAL B 179 TYR B 183 0 SHEET 2 AB1 4 ASP B 186 SER B 191 -1 O TYR B 188 N TYR B 181 SHEET 3 AB1 4 SER B 105 ASP B 110 -1 N LEU B 109 O LEU B 187 SHEET 4 AB1 4 GLU B 233 LEU B 234 -1 O LEU B 234 N VAL B 106 SHEET 1 AB2 5 LYS B 350 ALA B 355 0 SHEET 2 AB2 5 GLN B 336 TYR B 342 -1 N TRP B 337 O TYR B 354 SHEET 3 AB2 5 ILE B 326 GLY B 333 -1 N ILE B 326 O TYR B 342 SHEET 4 AB2 5 LYS B 388 LEU B 391 1 O LYS B 390 N ALA B 327 SHEET 5 AB2 5 TRP B 414 PHE B 416 1 O GLU B 415 N PHE B 389 CISPEP 1 PRO A 420 PRO A 421 0 0.27 SITE 1 AC1 13 PRO A 95 LEU A 100 LYS A 101 LYS A 102 SITE 2 AC1 13 LYS A 103 VAL A 106 VAL A 108 TYR A 181 SITE 3 AC1 13 TYR A 188 PHE A 227 TRP A 229 PRO A 236 SITE 4 AC1 13 TYR A 318 SITE 1 AC2 5 TYR B 232 ARG B 356 GLU B 370 GLN B 373 SITE 2 AC2 5 LYS B 374 CRYST1 223.166 69.289 104.625 90.00 106.20 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004481 0.000000 0.001302 0.00000 SCALE2 0.000000 0.014432 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009953 0.00000