HEADER TRANSFERASE 25-JUN-18 6DVS TITLE CRYSTAL STRUCTURE OF PSEUDOMONAS STUTZERI D-PHENYLGLYCINE TITLE 2 AMINOTRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-PHENYLGLYCINE AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.72; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS STUTZERI; SOURCE 3 ORGANISM_COMMON: PSEUDOMONAS PERFECTOMARINA; SOURCE 4 ORGANISM_TAXID: 316; SOURCE 5 GENE: DPGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.F.COUTURE,R.CHICA REVDAT 3 13-MAR-24 6DVS 1 REMARK REVDAT 2 03-OCT-18 6DVS 1 JRNL REVDAT 1 12-SEP-18 6DVS 0 JRNL AUTH C.J.W.WALTON,F.THIEBAUT,J.S.BRUNZELLE,J.F.COUTURE,R.A.CHICA JRNL TITL STRUCTURAL DETERMINANTS OF THE STEREOINVERTING ACTIVITY OF JRNL TITL 2 PSEUDOMONAS STUTZERI D-PHENYLGLYCINE AMINOTRANSFERASE. JRNL REF BIOCHEMISTRY V. 57 5437 2018 JRNL REFN ISSN 1520-4995 JRNL PMID 30153007 JRNL DOI 10.1021/ACS.BIOCHEM.8B00767 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 44043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2218 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.0015 - 4.5883 1.00 2823 131 0.1741 0.1905 REMARK 3 2 4.5883 - 3.6422 1.00 2678 148 0.1429 0.2337 REMARK 3 3 3.6422 - 3.1819 1.00 2642 156 0.1717 0.1817 REMARK 3 4 3.1819 - 2.8910 1.00 2625 139 0.1844 0.2327 REMARK 3 5 2.8910 - 2.6838 1.00 2590 173 0.1863 0.2379 REMARK 3 6 2.6838 - 2.5256 1.00 2609 134 0.1839 0.2191 REMARK 3 7 2.5256 - 2.3991 1.00 2591 138 0.1897 0.2021 REMARK 3 8 2.3991 - 2.2947 1.00 2619 128 0.1815 0.2472 REMARK 3 9 2.2947 - 2.2063 1.00 2575 141 0.1838 0.2193 REMARK 3 10 2.2063 - 2.1302 1.00 2605 135 0.1824 0.2209 REMARK 3 11 2.1302 - 2.0636 1.00 2548 162 0.1923 0.2306 REMARK 3 12 2.0636 - 2.0046 1.00 2620 136 0.1979 0.2696 REMARK 3 13 2.0046 - 1.9518 1.00 2562 122 0.2092 0.2733 REMARK 3 14 1.9518 - 1.9042 1.00 2569 117 0.2178 0.2696 REMARK 3 15 1.9042 - 1.8609 1.00 2587 145 0.2441 0.2642 REMARK 3 16 1.8609 - 1.8213 1.00 2582 113 0.2776 0.3621 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3399 REMARK 3 ANGLE : 0.750 4622 REMARK 3 CHIRALITY : 0.050 502 REMARK 3 PLANARITY : 0.005 612 REMARK 3 DIHEDRAL : 16.368 1994 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44043 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 49.983 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 78.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.98267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 99.96533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 99.96533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.98267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -155.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 49.98267 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 28 REMARK 465 VAL A 29 REMARK 465 THR A 30 REMARK 465 ALA A 31 REMARK 465 ASP A 32 REMARK 465 THR A 33 REMARK 465 ARG A 34 REMARK 465 VAL A 35 REMARK 465 PHE A 36 REMARK 465 HIS A 150 REMARK 465 GLY A 151 REMARK 465 TRP A 152 REMARK 465 HIS A 153 REMARK 465 ASP A 154 REMARK 465 PHE A 155 REMARK 465 SER A 156 REMARK 465 ALA A 157 REMARK 465 SER A 158 REMARK 465 GLY A 159 REMARK 465 TYR A 160 REMARK 465 ASN A 161 REMARK 465 SER A 162 REMARK 465 HIS A 163 REMARK 465 PHE A 164 REMARK 465 ASP A 165 REMARK 465 GLY A 166 REMARK 465 GLN A 167 REMARK 465 PRO A 168 REMARK 465 ALA A 169 REMARK 465 PRO A 170 REMARK 465 GLY A 171 REMARK 465 VAL A 172 REMARK 465 LEU A 173 REMARK 465 PRO A 174 REMARK 465 GLU A 175 REMARK 465 ILE A 176 REMARK 465 ARG A 292 REMARK 465 GLY A 293 REMARK 465 SER A 294 REMARK 465 ASP A 295 REMARK 465 ARG A 296 REMARK 465 LYS A 297 REMARK 465 VAL A 298 REMARK 465 LEU A 299 REMARK 465 HIS A 300 REMARK 465 GLN A 301 REMARK 465 GLY A 302 REMARK 465 THR A 446 REMARK 465 ASN A 447 REMARK 465 LEU A 448 REMARK 465 SER A 449 REMARK 465 GLY A 450 REMARK 465 ASN A 451 REMARK 465 GLN A 452 REMARK 465 SER A 453 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 178 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 131 NH1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 745 O HOH A 773 2.06 REMARK 500 O HOH A 790 O HOH A 793 2.11 REMARK 500 O HOH A 671 O HOH A 840 2.13 REMARK 500 OE1 GLU A 422 O HOH A 601 2.14 REMARK 500 O HOH A 770 O HOH A 824 2.18 REMARK 500 O PHE A 110 O HOH A 602 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 660 O HOH A 762 6665 1.95 REMARK 500 O HOH A 628 O HOH A 840 6555 2.08 REMARK 500 O HOH A 690 O HOH A 818 6555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 63 -11.75 -155.77 REMARK 500 LEU A 69 68.33 -109.86 REMARK 500 VAL A 210 -47.24 72.16 REMARK 500 ARG A 248 -51.49 -126.07 REMARK 500 ALA A 268 -161.48 -172.71 REMARK 500 LYS A 269 -114.59 59.16 REMARK 500 THR A 305 -67.84 -100.74 REMARK 500 PHE A 358 -136.64 63.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 516 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 517 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 518 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 519 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 520 DBREF 6DVS A 1 453 UNP Q6VY99 Q6VY99_PSEST 1 453 SEQRES 1 A 453 MET SER ILE LEU ASN ASP TYR LYS ARG LYS THR GLU GLY SEQRES 2 A 453 SER VAL PHE TRP ALA GLN ARG ALA ARG SER VAL MET PRO SEQRES 3 A 453 ASP GLY VAL THR ALA ASP THR ARG VAL PHE ASP PRO HIS SEQRES 4 A 453 GLY LEU PHE ILE SER ASP ALA GLN GLY VAL HIS LYS THR SEQRES 5 A 453 ASP VAL ASP GLY ASN VAL TYR LEU ASP PHE PHE GLY GLY SEQRES 6 A 453 HIS GLY ALA LEU VAL LEU GLY HIS GLY HIS PRO ARG VAL SEQRES 7 A 453 ASN ALA ALA ILE ALA GLU ALA LEU SER HIS GLY VAL GLN SEQRES 8 A 453 TYR ALA ALA SER HIS PRO LEU GLU VAL ARG TRP ALA GLU SEQRES 9 A 453 ARG ILE VAL ALA ALA PHE PRO SER ILE ARG LYS LEU ARG SEQRES 10 A 453 PHE THR GLY SER GLY THR GLU THR THR LEU LEU ALA LEU SEQRES 11 A 453 ARG VAL ALA ARG ALA PHE THR GLY ARG ARG MET ILE LEU SEQRES 12 A 453 ARG ILE ALA THR HIS TYR HIS GLY TRP HIS ASP PHE SER SEQRES 13 A 453 ALA SER GLY TYR ASN SER HIS PHE ASP GLY GLN PRO ALA SEQRES 14 A 453 PRO GLY VAL LEU PRO GLU ILE ALA LYS ASN THR LEU LEU SEQRES 15 A 453 ILE ARG PRO ASP ASP ILE GLU GLY MET ARG GLU VAL PHE SEQRES 16 A 453 ALA GLN HIS GLY SER ASP ILE ALA ALA PHE ILE ALA GLU SEQRES 17 A 453 PRO VAL GLY SER HIS PHE GLY VAL THR PRO VAL SER ASP SEQRES 18 A 453 SER PHE LEU ARG GLU GLY ALA GLU LEU ALA ARG GLN TYR SEQRES 19 A 453 GLY ALA LEU PHE ILE LEU ASP GLU VAL ILE SER GLY PHE SEQRES 20 A 453 ARG VAL GLY ASN HIS GLY MET GLN ALA LEU LEU ASP VAL SEQRES 21 A 453 GLN PRO ASP LEU THR CYS LEU ALA LYS ALA SER ALA GLY SEQRES 22 A 453 GLY LEU PRO GLY GLY ILE LEU GLY GLY ARG GLU ASP VAL SEQRES 23 A 453 MET GLY VAL LEU SER ARG GLY SER ASP ARG LYS VAL LEU SEQRES 24 A 453 HIS GLN GLY THR PHE THR GLY ASN PRO ILE THR ALA ALA SEQRES 25 A 453 ALA ALA ILE ALA ALA ILE ASP THR ILE LEU GLU ASP ASP SEQRES 26 A 453 VAL CYS ALA LYS ILE ASN ASP LEU GLY GLN PHE ALA ARG SEQRES 27 A 453 GLU ALA MET ASN HIS LEU PHE ALA ARG LYS GLY LEU ASN SEQRES 28 A 453 TRP LEU ALA TYR GLY ARG PHE SER GLY PHE HIS LEU MET SEQRES 29 A 453 PRO GLY LEU PRO PRO ASN THR THR ASP THR GLY SER ILE SEQRES 30 A 453 THR ARG ALA GLU VAL ALA ARG PRO ASP VAL LYS MET ILE SEQRES 31 A 453 ALA ALA MET ARG MET ALA LEU ILE LEU GLU GLY VAL ASP SEQRES 32 A 453 ILE GLY GLY ARG GLY SER VAL PHE LEU SER ALA GLN HIS SEQRES 33 A 453 GLU ARG GLU HIS VAL GLU HIS LEU VAL THR THR PHE ASP SEQRES 34 A 453 ARG VAL LEU ASP ARG LEU ALA ASP GLU ASN LEU LEU SER SEQRES 35 A 453 TRP GLN PRO THR ASN LEU SER GLY ASN GLN SER HET SO4 A 501 5 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET EDO A 516 4 HET EDO A 517 4 HET TRS A 518 8 HET PO4 A 519 5 HET ACT A 520 4 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL HETSYN TRS TRIS BUFFER FORMUL 2 SO4 6(O4 S 2-) FORMUL 8 EDO 11(C2 H6 O2) FORMUL 19 TRS C4 H12 N O3 1+ FORMUL 20 PO4 O4 P 3- FORMUL 21 ACT C2 H3 O2 1- FORMUL 22 HOH *262(H2 O) HELIX 1 AA1 SER A 2 THR A 11 1 10 HELIX 2 AA2 THR A 11 SER A 23 1 13 HELIX 3 AA3 HIS A 75 HIS A 88 1 14 HELIX 4 AA4 HIS A 96 PHE A 110 1 15 HELIX 5 AA5 SER A 121 GLY A 138 1 18 HELIX 6 AA6 ASP A 187 GLY A 199 1 13 HELIX 7 AA7 SER A 212 VAL A 216 1 5 HELIX 8 AA8 SER A 220 TYR A 234 1 15 HELIX 9 AA9 HIS A 252 ASP A 259 1 8 HELIX 10 AB1 ALA A 270 GLY A 273 5 4 HELIX 11 AB2 ARG A 283 GLY A 288 1 6 HELIX 12 AB3 VAL A 289 SER A 291 5 3 HELIX 13 AB4 ASN A 307 ASP A 324 1 18 HELIX 14 AB5 ASP A 325 GLY A 349 1 25 HELIX 15 AB6 THR A 374 ARG A 379 1 6 HELIX 16 AB7 ASP A 386 GLU A 400 1 15 HELIX 17 AB8 GLU A 417 GLU A 438 1 22 SHEET 1 AA1 4 ILE A 43 GLN A 47 0 SHEET 2 AA1 4 HIS A 50 ASP A 53 -1 O THR A 52 N SER A 44 SHEET 3 AA1 4 VAL A 58 ASP A 61 -1 O TYR A 59 N LYS A 51 SHEET 4 AA1 4 VAL A 402 ASP A 403 1 O ASP A 403 N LEU A 60 SHEET 1 AA2 7 LYS A 115 THR A 119 0 SHEET 2 AA2 7 GLY A 278 GLY A 282 -1 O LEU A 280 N ARG A 117 SHEET 3 AA2 7 LEU A 264 ALA A 268 -1 N THR A 265 O GLY A 281 SHEET 4 AA2 7 LEU A 237 ASP A 241 1 N LEU A 240 O CYS A 266 SHEET 5 AA2 7 ILE A 202 ALA A 207 1 N ALA A 207 O ASP A 241 SHEET 6 AA2 7 MET A 141 ILE A 145 1 N MET A 141 O ALA A 203 SHEET 7 AA2 7 THR A 180 ILE A 183 1 O LEU A 181 N ILE A 142 SHEET 1 AA3 3 TRP A 352 TYR A 355 0 SHEET 2 AA3 3 GLY A 360 PRO A 365 -1 O MET A 364 N LEU A 353 SHEET 3 AA3 3 SER A 409 PHE A 411 -1 O VAL A 410 N PHE A 361 SITE 1 AC1 7 ARG A 20 ARG A 101 GLU A 104 ARG A 105 SITE 2 AC1 7 ARG A 430 ASP A 437 HOH A 751 SITE 1 AC2 5 HIS A 50 LEU A 60 HIS A 420 HIS A 423 SITE 2 AC2 5 HOH A 605 SITE 1 AC3 6 ARG A 144 ALA A 146 THR A 147 HIS A 148 SITE 2 AC3 6 LEU A 182 HOH A 650 SITE 1 AC4 5 SER A 2 ARG A 101 GLU A 438 EDO A 514 SITE 2 AC4 5 HOH A 672 SITE 1 AC5 7 ASN A 79 LEU A 86 GLY A 89 GLN A 91 SITE 2 AC5 7 EDO A 513 ACT A 520 HOH A 638 SITE 1 AC6 11 GLY A 64 GLY A 65 HIS A 66 TYR A 92 SITE 2 AC6 11 ALA A 93 ALA A 94 THR A 305 HOH A 615 SITE 3 AC6 11 HOH A 628 HOH A 684 HOH A 731 SITE 1 AC7 4 GLU A 104 ARG A 430 ASP A 433 HOH A 770 SITE 1 AC8 5 ASN A 331 ARG A 338 ARG A 357 PHE A 358 SITE 2 AC8 5 HOH A 657 SITE 1 AC9 7 ALA A 68 LEU A 69 VAL A 70 LEU A 71 SITE 2 AC9 7 ALA A 270 GLY A 273 ACT A 520 SITE 1 AD1 4 HIS A 75 THR A 320 ASP A 324 GLN A 415 SITE 1 AD2 6 GLY A 48 VAL A 49 ASP A 61 GLY A 64 SITE 2 AD2 6 HIS A 73 HOH A 643 SITE 1 AD3 9 GLN A 47 GLY A 48 VAL A 49 HIS A 50 SITE 2 AD3 9 HIS A 420 HOH A 605 HOH A 653 HOH A 707 SITE 3 AD3 9 HOH A 786 SITE 1 AD4 5 ASN A 79 LEU A 86 SO4 A 505 HOH A 691 SITE 2 AD4 5 HOH A 758 SITE 1 AD5 5 ALA A 81 ALA A 312 ILE A 315 SO4 A 504 SITE 2 AD5 5 HOH A 627 SITE 1 AD6 5 ALA A 196 HIS A 198 GLY A 199 SER A 200 SITE 2 AD6 5 TYR A 234 SITE 1 AD7 4 HIS A 343 ALA A 346 PRO A 369 HOH A 674 SITE 1 AD8 3 ASN A 251 HIS A 252 HOH A 669 SITE 1 AD9 4 ARG A 114 ARG A 283 GLU A 284 ASP A 285 SITE 1 AE1 6 SER A 121 GLY A 122 THR A 123 THR A 303 SITE 2 AE1 6 HOH A 619 HOH A 652 SITE 1 AE2 8 LEU A 69 VAL A 78 ASN A 79 GLN A 91 SITE 2 AE2 8 GLY A 273 SO4 A 505 EDO A 509 HOH A 638 CRYST1 74.639 74.639 149.948 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013398 0.007735 0.000000 0.00000 SCALE2 0.000000 0.015470 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006669 0.00000