HEADER HYDROLASE, PROTEIN BINDING 28-JUN-18 6DX2 TITLE CRYSTAL STRUCTURE OF THE VIRAL OTU DOMAIN PROTEASE FROM DERA GHAZI TITLE 2 KHAN VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA POLYMERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DERA GHAZI KHAN ORTHONAIROVIRUS; SOURCE 3 ORGANISM_TAXID: 1980520; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRAL OTU, DUB, VIRAL PROTEIN, HYDROLASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR B.S.BELDON,J.V.DZIMIANSKI,C.M.DACZKOWSKI,O.Y.GOODWIN,S.D.PEGAN REVDAT 4 11-OCT-23 6DX2 1 REMARK REVDAT 3 18-DEC-19 6DX2 1 REMARK REVDAT 2 23-JAN-19 6DX2 1 JRNL REVDAT 1 19-DEC-18 6DX2 0 JRNL AUTH J.V.DZIMIANSKI,B.S.BELDON,C.M.DACZKOWSKI,O.Y.GOODWIN, JRNL AUTH 2 F.E.M.SCHOLTE,E.BERGERON,S.D.PEGAN JRNL TITL PROBING THE IMPACT OF NAIROVIRUS GENOMIC DIVERSITY ON VIRAL JRNL TITL 2 OVARIAN TUMOR DOMAIN PROTEASE (VOTU) STRUCTURE AND JRNL TITL 3 DEUBIQUITINASE ACTIVITY. JRNL REF PLOS PATHOG. V. 15 07515 2019 JRNL REFN ESSN 1553-7374 JRNL PMID 30629698 JRNL DOI 10.1371/JOURNAL.PPAT.1007515 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 40772 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 2008 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0251 - 3.8877 0.87 2561 79 0.1708 0.1843 REMARK 3 2 3.8877 - 3.0871 1.00 2833 145 0.1634 0.1794 REMARK 3 3 3.0871 - 2.6972 1.00 2857 99 0.1734 0.2428 REMARK 3 4 2.6972 - 2.4507 1.00 2779 176 0.1808 0.2395 REMARK 3 5 2.4507 - 2.2752 1.00 2792 145 0.1797 0.2266 REMARK 3 6 2.2752 - 2.1411 1.00 2787 174 0.1756 0.2135 REMARK 3 7 2.1411 - 2.0339 1.00 2773 183 0.1921 0.2086 REMARK 3 8 2.0339 - 1.9454 1.00 2798 148 0.2051 0.2472 REMARK 3 9 1.9454 - 1.8705 1.00 2783 146 0.1977 0.2536 REMARK 3 10 1.8705 - 1.8060 1.00 2791 131 0.2075 0.2342 REMARK 3 11 1.8060 - 1.7495 1.00 2752 184 0.2290 0.2389 REMARK 3 12 1.7495 - 1.6995 1.00 2818 131 0.2488 0.2909 REMARK 3 13 1.6995 - 1.6548 1.00 2798 143 0.2859 0.3453 REMARK 3 14 1.6548 - 1.6144 0.94 2642 124 0.3121 0.3217 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 2554 REMARK 3 ANGLE : 1.259 3472 REMARK 3 CHIRALITY : 0.073 374 REMARK 3 PLANARITY : 0.010 446 REMARK 3 DIHEDRAL : 3.598 1484 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5419 -17.8233 -5.7470 REMARK 3 T TENSOR REMARK 3 T11: 0.4979 T22: 0.4192 REMARK 3 T33: 0.5394 T12: -0.0440 REMARK 3 T13: -0.0105 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.1769 L22: 0.5971 REMARK 3 L33: 0.6296 L12: -0.1100 REMARK 3 L13: 0.3234 L23: -0.3492 REMARK 3 S TENSOR REMARK 3 S11: -0.3776 S12: -0.5764 S13: -0.3941 REMARK 3 S21: 0.3656 S22: 0.1434 S23: 0.2046 REMARK 3 S31: 0.7886 S32: -0.1656 S33: -0.0009 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 19 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.1541 -3.6695 -6.3187 REMARK 3 T TENSOR REMARK 3 T11: 0.3700 T22: 0.3472 REMARK 3 T33: 0.4044 T12: 0.0052 REMARK 3 T13: 0.0080 T23: -0.0159 REMARK 3 L TENSOR REMARK 3 L11: 0.7920 L22: 1.0160 REMARK 3 L33: 1.3361 L12: 0.0877 REMARK 3 L13: 0.6344 L23: -1.0420 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.1231 S13: 0.1027 REMARK 3 S21: -0.2565 S22: 0.1158 S23: 0.2152 REMARK 3 S31: -0.0728 S32: -0.0533 S33: -0.0004 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 42 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9199 -2.5076 0.6138 REMARK 3 T TENSOR REMARK 3 T11: 0.3030 T22: 0.3778 REMARK 3 T33: 0.3273 T12: -0.0007 REMARK 3 T13: -0.0350 T23: 0.0308 REMARK 3 L TENSOR REMARK 3 L11: 1.7098 L22: 2.4003 REMARK 3 L33: 3.5327 L12: 1.0509 REMARK 3 L13: -0.9118 L23: -1.0820 REMARK 3 S TENSOR REMARK 3 S11: 0.0156 S12: -0.2808 S13: 0.0997 REMARK 3 S21: 0.0248 S22: -0.2030 S23: -0.3553 REMARK 3 S31: -0.1881 S32: 0.5557 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5004 -5.6505 -4.7980 REMARK 3 T TENSOR REMARK 3 T11: 0.3454 T22: 0.3071 REMARK 3 T33: 0.3473 T12: 0.0297 REMARK 3 T13: -0.0002 T23: 0.0363 REMARK 3 L TENSOR REMARK 3 L11: 2.7779 L22: 2.0621 REMARK 3 L33: 2.0968 L12: 1.0155 REMARK 3 L13: -0.7657 L23: 1.5152 REMARK 3 S TENSOR REMARK 3 S11: 0.0696 S12: 0.1938 S13: 0.2693 REMARK 3 S21: -0.3666 S22: -0.0455 S23: 0.2430 REMARK 3 S31: -0.2937 S32: -0.1602 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.3952 -9.6672 20.0580 REMARK 3 T TENSOR REMARK 3 T11: 0.4487 T22: 0.5459 REMARK 3 T33: 0.5612 T12: -0.0413 REMARK 3 T13: 0.0067 T23: -0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.6062 L22: 0.1978 REMARK 3 L33: 0.8751 L12: 0.0104 REMARK 3 L13: -0.0807 L23: 0.4411 REMARK 3 S TENSOR REMARK 3 S11: 0.1619 S12: 0.3664 S13: 0.4369 REMARK 3 S21: -0.1602 S22: -0.3643 S23: -0.7544 REMARK 3 S31: -0.1089 S32: 0.7968 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 19 THROUGH 41 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5451 -8.0746 20.8246 REMARK 3 T TENSOR REMARK 3 T11: 0.3365 T22: 0.3925 REMARK 3 T33: 0.4026 T12: 0.0106 REMARK 3 T13: -0.0056 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 1.0840 L22: 1.4792 REMARK 3 L33: 1.4199 L12: 0.3875 REMARK 3 L13: -0.8041 L23: 1.2097 REMARK 3 S TENSOR REMARK 3 S11: 0.0879 S12: -0.3488 S13: 0.2360 REMARK 3 S21: -0.0232 S22: -0.0241 S23: 0.0389 REMARK 3 S31: -0.0673 S32: -0.0478 S33: 0.0002 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 42 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7119 -26.2862 13.7166 REMARK 3 T TENSOR REMARK 3 T11: 0.3656 T22: 0.3143 REMARK 3 T33: 0.3321 T12: 0.0001 REMARK 3 T13: 0.0182 T23: -0.0218 REMARK 3 L TENSOR REMARK 3 L11: 2.1382 L22: 1.3430 REMARK 3 L33: 3.6861 L12: 0.8428 REMARK 3 L13: -0.9536 L23: -0.7763 REMARK 3 S TENSOR REMARK 3 S11: -0.1748 S12: 0.0233 S13: -0.3929 REMARK 3 S21: -0.2933 S22: 0.0504 S23: 0.1799 REMARK 3 S31: 0.5933 S32: -0.1345 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 158 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.6023 -10.6706 19.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.3042 T22: 0.3460 REMARK 3 T33: 0.3264 T12: 0.0286 REMARK 3 T13: 0.0281 T23: -0.0051 REMARK 3 L TENSOR REMARK 3 L11: 2.3237 L22: 2.8203 REMARK 3 L33: 2.1024 L12: 0.7779 REMARK 3 L13: 1.3377 L23: -0.8805 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: -0.3793 S13: 0.2157 REMARK 3 S21: 0.2578 S22: 0.0528 S23: 0.2821 REMARK 3 S31: -0.2128 S32: -0.2552 S33: 0.0011 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40786 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.614 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6DX1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID PH 3.5, 13% PEG REMARK 280 6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.88450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.44225 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.32675 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 159 REMARK 465 VAL A 160 REMARK 465 ASP A 161 REMARK 465 GLN A 162 REMARK 465 ASP A 163 REMARK 465 VAL A 164 REMARK 465 LEU A 165 REMARK 465 ARG A 166 REMARK 465 LYS A 167 REMARK 465 SER A 168 REMARK 465 GLY A 169 REMARK 465 SER A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LEU B 159 REMARK 465 VAL B 160 REMARK 465 ASP B 161 REMARK 465 GLN B 162 REMARK 465 ASP B 163 REMARK 465 VAL B 164 REMARK 465 LEU B 165 REMARK 465 ARG B 166 REMARK 465 LYS B 167 REMARK 465 SER B 168 REMARK 465 GLY B 169 REMARK 465 SER B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 208 O HOH A 286 1.82 REMARK 500 O HOH A 201 O HOH A 238 1.98 REMARK 500 NH1 ARG A 95 O HOH A 201 1.99 REMARK 500 O HOH A 230 O HOH A 274 2.02 REMARK 500 O HOH A 208 O HOH A 264 2.05 REMARK 500 NE2 GLN A 148 O HOH A 202 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 232 O HOH A 282 3555 2.10 REMARK 500 O HOH B 220 O HOH B 264 4544 2.13 REMARK 500 O HOH A 228 O HOH B 214 4554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 23 132.28 -37.41 REMARK 500 REMARK 500 REMARK: NULL DBREF1 6DX2 A 1 169 UNP A0A191KW82_9VIRU DBREF2 6DX2 A A0A191KW82 1 169 DBREF1 6DX2 B 1 169 UNP A0A191KW82_9VIRU DBREF2 6DX2 B A0A191KW82 1 169 SEQADV 6DX2 SER A 170 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 171 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 172 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 173 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 174 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 175 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS A 176 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 SER B 170 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 171 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 172 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 173 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 174 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 175 UNP A0A191KW8 EXPRESSION TAG SEQADV 6DX2 HIS B 176 UNP A0A191KW8 EXPRESSION TAG SEQRES 1 A 176 MET SER SER PHE HIS LEU ASP ASP ILE ASN TRP GLN PRO SEQRES 2 A 176 ASN ILE GLU GLY VAL TYR ASN SER GLU GLN ARG PHE ASN SEQRES 3 A 176 LEU ASN ASP TYR PHE THR SER GLU LYS VAL PRO GLY ASP SEQRES 4 A 176 GLY ASN CYS PHE PHE TYR SER VAL SER PHE LEU LEU PHE SEQRES 5 A 176 GLU SER LEU SER GLU TRP ARG SER ILE LYS ASN THR ILE SEQRES 6 A 176 ALA SER PHE ALA ALA ALA ASN TRP GLY GLN CYS VAL GLN SEQRES 7 A 176 ALA LYS LEU ASN TYR ALA ASN SER SER ASP TYR ARG ALA SEQRES 8 A 176 ASP MET LEU ARG ASN TYR TYR TRP GLY GLY SER VAL GLU SEQRES 9 A 176 ALA GLU ILE LEU SER LYS ALA LEU ASN ILE THR ILE ILE SEQRES 10 A 176 LEU TRP GLU ALA ASP VAL SER GLU ASN VAL VAL THR ALA SEQRES 11 A 176 THR LYS TYR GLY PRO GLY LEU VAL SER THR ALA LEU ASN SEQRES 12 A 176 LEU LYS LEU CYS GLN GLY HIS ILE GLU PRO LEU GLN LEU SEQRES 13 A 176 MET LYS LEU VAL ASP GLN ASP VAL LEU ARG LYS SER GLY SEQRES 14 A 176 SER HIS HIS HIS HIS HIS HIS SEQRES 1 B 176 MET SER SER PHE HIS LEU ASP ASP ILE ASN TRP GLN PRO SEQRES 2 B 176 ASN ILE GLU GLY VAL TYR ASN SER GLU GLN ARG PHE ASN SEQRES 3 B 176 LEU ASN ASP TYR PHE THR SER GLU LYS VAL PRO GLY ASP SEQRES 4 B 176 GLY ASN CYS PHE PHE TYR SER VAL SER PHE LEU LEU PHE SEQRES 5 B 176 GLU SER LEU SER GLU TRP ARG SER ILE LYS ASN THR ILE SEQRES 6 B 176 ALA SER PHE ALA ALA ALA ASN TRP GLY GLN CYS VAL GLN SEQRES 7 B 176 ALA LYS LEU ASN TYR ALA ASN SER SER ASP TYR ARG ALA SEQRES 8 B 176 ASP MET LEU ARG ASN TYR TYR TRP GLY GLY SER VAL GLU SEQRES 9 B 176 ALA GLU ILE LEU SER LYS ALA LEU ASN ILE THR ILE ILE SEQRES 10 B 176 LEU TRP GLU ALA ASP VAL SER GLU ASN VAL VAL THR ALA SEQRES 11 B 176 THR LYS TYR GLY PRO GLY LEU VAL SER THR ALA LEU ASN SEQRES 12 B 176 LEU LYS LEU CYS GLN GLY HIS ILE GLU PRO LEU GLN LEU SEQRES 13 B 176 MET LYS LEU VAL ASP GLN ASP VAL LEU ARG LYS SER GLY SEQRES 14 B 176 SER HIS HIS HIS HIS HIS HIS FORMUL 3 HOH *183(H2 O) HELIX 1 AA1 HIS A 5 ILE A 9 5 5 HELIX 2 AA2 ASN A 26 ASP A 29 5 4 HELIX 3 AA3 ASN A 41 GLU A 53 1 13 HELIX 4 AA4 GLU A 57 ASN A 72 1 16 HELIX 5 AA5 TRP A 73 GLN A 75 5 3 HELIX 6 AA6 CYS A 76 TYR A 83 1 8 HELIX 7 AA7 ASN A 85 LEU A 94 1 10 HELIX 8 AA8 GLY A 101 ASN A 113 1 13 HELIX 9 AA9 LEU A 137 ALA A 141 5 5 HELIX 10 AB1 HIS B 5 ILE B 9 5 5 HELIX 11 AB2 ASN B 26 ASP B 29 5 4 HELIX 12 AB3 ASN B 41 GLU B 53 1 13 HELIX 13 AB4 GLU B 57 ASN B 72 1 16 HELIX 14 AB5 TRP B 73 GLN B 75 5 3 HELIX 15 AB6 CYS B 76 TYR B 83 1 8 HELIX 16 AB7 ASN B 85 LEU B 94 1 10 HELIX 17 AB8 GLY B 101 ASN B 113 1 13 HELIX 18 AB9 LEU B 137 ALA B 141 5 5 SHEET 1 AA1 7 GLN A 12 PRO A 13 0 SHEET 2 AA1 7 VAL A 18 SER A 21 -1 O ASN A 20 N GLN A 12 SHEET 3 AA1 7 VAL A 127 TYR A 133 -1 O LYS A 132 N TYR A 19 SHEET 4 AA1 7 ILE A 116 ALA A 121 -1 N GLU A 120 O VAL A 128 SHEET 5 AA1 7 LEU A 142 CYS A 147 1 O LEU A 144 N TRP A 119 SHEET 6 AA1 7 HIS A 150 LEU A 156 -1 O GLU A 152 N LYS A 145 SHEET 7 AA1 7 PHE A 31 SER A 33 -1 N THR A 32 O GLN A 155 SHEET 1 AA2 7 GLN B 12 PRO B 13 0 SHEET 2 AA2 7 VAL B 18 SER B 21 -1 O ASN B 20 N GLN B 12 SHEET 3 AA2 7 VAL B 127 TYR B 133 -1 O LYS B 132 N TYR B 19 SHEET 4 AA2 7 ILE B 116 ALA B 121 -1 N GLU B 120 O VAL B 128 SHEET 5 AA2 7 LEU B 142 CYS B 147 1 O LEU B 144 N TRP B 119 SHEET 6 AA2 7 HIS B 150 LEU B 156 -1 O GLU B 152 N LYS B 145 SHEET 7 AA2 7 PHE B 31 SER B 33 -1 N THR B 32 O GLN B 155 CRYST1 68.417 68.417 69.769 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014616 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014333 0.00000