HEADER IMMUNE SYSTEM/AGONIST 29-JUN-18 6DXL TITLE LINKED AMIDOBENZIMIDAZOLE STING AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: STIMULATOR OF INTERFERON PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STING, LOC340061, HCG_1782396; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21START(DE3) KEYWDS AGONIST, DNA-SENSOR, CGAS, TBK1, IMMUNE SYSTEM, IMMUNE SYSTEM-AGONIST KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA REVDAT 4 13-MAR-24 6DXL 1 LINK REVDAT 3 02-JAN-19 6DXL 1 JRNL REVDAT 2 21-NOV-18 6DXL 1 JRNL REVDAT 1 07-NOV-18 6DXL 0 JRNL AUTH J.M.RAMANJULU,G.S.PESIRIDIS,J.YANG,N.CONCHA,R.SINGHAUS, JRNL AUTH 2 S.Y.ZHANG,J.L.TRAN,P.MOORE,S.LEHMANN,H.C.EBERL,M.MUELBAIER, JRNL AUTH 3 J.L.SCHNECK,J.CLEMENS,M.ADAM,J.MEHLMANN,J.ROMANO,A.MORALES, JRNL AUTH 4 J.KANG,L.LEISTER,T.L.GRAYBILL,A.K.CHARNLEY,G.YE,N.NEVINS, JRNL AUTH 5 K.BEHNIA,A.I.WOLF,V.KASPARCOVA,K.NURSE,L.WANG,Y.LI,M.KLEIN, JRNL AUTH 6 C.B.HOPSON,J.GUSS,M.BANTSCHEFF,G.BERGAMINI,M.A.REILLY, JRNL AUTH 7 Y.LIAN,K.J.DUFFY,J.ADAMS,K.P.FOLEY,P.J.GOUGH,R.W.MARQUIS, JRNL AUTH 8 J.SMOTHERS,A.HOOS,J.BERTIN JRNL TITL DESIGN OF AMIDOBENZIMIDAZOLE STING RECEPTOR AGONISTS WITH JRNL TITL 2 SYSTEMIC ACTIVITY. JRNL REF NATURE V. 564 439 2018 JRNL REFN ESSN 1476-4687 JRNL PMID 30405246 JRNL DOI 10.1038/S41586-018-0705-Y REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 18909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.284 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2601 - 4.6523 0.99 2701 136 0.2336 0.3234 REMARK 3 2 4.6523 - 3.6935 1.00 2683 144 0.2116 0.2028 REMARK 3 3 3.6935 - 3.2269 1.00 2638 136 0.2472 0.2857 REMARK 3 4 3.2269 - 2.9319 1.00 2662 136 0.2757 0.3118 REMARK 3 5 2.9319 - 2.7218 1.00 2620 140 0.3185 0.3161 REMARK 3 6 2.7218 - 2.5614 0.97 2576 132 0.3560 0.3602 REMARK 3 7 2.5614 - 2.4331 0.80 2092 113 0.3622 0.4135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 59.24 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 88.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2828 REMARK 3 ANGLE : 0.694 3857 REMARK 3 CHIRALITY : 0.041 435 REMARK 3 PLANARITY : 0.004 502 REMARK 3 DIHEDRAL : 14.092 1687 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 66.1175 -13.9711 75.7574 REMARK 3 T TENSOR REMARK 3 T11: 0.5029 T22: 0.4629 REMARK 3 T33: 0.4739 T12: 0.0348 REMARK 3 T13: -0.0711 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 0.9326 L22: 2.3414 REMARK 3 L33: 1.0724 L12: 1.0416 REMARK 3 L13: 0.5001 L23: 1.1268 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.0521 S13: 0.0042 REMARK 3 S21: -0.0725 S22: 0.0062 S23: -0.0278 REMARK 3 S31: 0.0221 S32: -0.0703 S33: 0.0293 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DXL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-18. REMARK 100 THE DEPOSITION ID IS D_1000235387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18949 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.89100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13-15% PEG8000, 0.07M CACODYLATE, PH REMARK 280 6.8, 0.8M CALCIUM ACETATE, AND 20% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.51700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 ARG A 232 REMARK 465 ALA A 233 REMARK 465 GLY A 234 REMARK 465 ILE A 235 REMARK 465 LYS A 236 REMARK 465 ASP A 237 REMARK 465 ARG A 238 REMARK 465 VAL A 239 REMARK 465 ASP A 320 REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 ARG B 232 REMARK 465 ALA B 233 REMARK 465 GLY B 234 REMARK 465 ILE B 235 REMARK 465 LYS B 236 REMARK 465 ASP B 237 REMARK 465 ARG B 238 REMARK 465 ALA B 318 REMARK 465 ASP B 319 REMARK 465 ASP B 320 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 153 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 GLN A 176 CG CD OE1 NE2 REMARK 470 ARG A 180 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 184 CG CD OE1 NE2 REMARK 470 LEU A 189 CG CD1 CD2 REMARK 470 LEU A 190 CG CD1 CD2 REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 MET A 214 CG SD CE REMARK 470 ARG A 220 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 224 CG CD CE NZ REMARK 470 GLN A 228 CG CD OE1 NE2 REMARK 470 TYR A 240 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN A 252 CG CD OE1 NE2 REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 GLU A 282 CG CD OE1 OE2 REMARK 470 GLU A 286 CG CD OE1 OE2 REMARK 470 GLU A 304 CG CD OE1 OE2 REMARK 470 GLN A 306 CG CD OE1 NE2 REMARK 470 ARG A 310 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 319 CG OD1 OD2 REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 GLN B 176 CG CD OE1 NE2 REMARK 470 ARG B 180 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 184 CD OE1 NE2 REMARK 470 HIS B 185 CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 186 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASN B 187 CG OD1 ND2 REMARK 470 LEU B 190 CG CD1 CD2 REMARK 470 ARG B 191 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 212 CD1 CD2 REMARK 470 LYS B 224 CG CD CE NZ REMARK 470 GLN B 228 CG CD OE1 NE2 REMARK 470 THR B 229 OG1 CG2 REMARK 470 GLN B 252 CG CD OE1 NE2 REMARK 470 THR B 263 OG1 CG2 REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 GLU B 304 CG CD OE1 OE2 REMARK 470 GLN B 306 CG CD OE1 NE2 REMARK 470 GLU B 340 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 328 HH22 ARG A 331 1.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HD22 ASN A 188 OD1 ASP B 223 2758 1.58 REMARK 500 O THR A 342 O HOH A 506 2858 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 167 -64.74 -136.84 REMARK 500 LEU A 190 -3.07 82.77 REMARK 500 GLU A 304 -13.25 68.68 REMARK 500 TYR B 167 -56.67 -133.05 REMARK 500 LEU B 189 -68.25 -97.80 REMARK 500 GLU B 304 -3.76 62.27 REMARK 500 THR B 342 -74.04 -70.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD2 REMARK 620 2 GLU A 316 OE1 106.0 REMARK 620 3 GLU A 316 OE2 101.0 47.5 REMARK 620 4 VAL A 341 O 111.9 69.1 26.0 REMARK 620 5 HOH A 504 O 99.4 68.0 115.4 132.1 REMARK 620 6 HOH A 506 O 151.3 102.5 100.6 81.5 88.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 205 OD2 REMARK 620 2 GLU B 316 OE1 73.1 REMARK 620 3 VAL B 341 O 103.1 45.6 REMARK 620 4 THR B 342 O 98.6 42.9 4.5 REMARK 620 5 HOH B 502 O 102.6 48.6 4.3 5.8 REMARK 620 6 HOH B 505 O 103.4 44.5 1.6 5.1 5.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HG4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 401 DBREF1 6DXL A 153 343 UNP A0A2R3XZB7_HUMAN DBREF2 6DXL A A0A2R3XZB7 153 343 DBREF1 6DXL B 153 343 UNP A0A2R3XZB7_HUMAN DBREF2 6DXL B A0A2R3XZB7 153 343 SEQRES 1 A 191 PHE ASN VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE SEQRES 2 A 191 GLY TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG SEQRES 3 A 191 ILE ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG SEQRES 4 A 191 GLY ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU SEQRES 5 A 191 ASP CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO SEQRES 6 A 191 ASN ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY SEQRES 7 A 191 ASP ARG ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER SEQRES 8 A 191 ILE TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR SEQRES 9 A 191 CYS VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE SEQRES 10 A 191 ALA MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU SEQRES 11 A 191 ASP ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU SEQRES 12 A 191 GLU ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN SEQRES 13 A 191 CYS ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SEQRES 14 A 191 SER PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG SEQRES 15 A 191 GLN GLU GLU LYS GLU GLU VAL THR VAL SEQRES 1 B 191 PHE ASN VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE SEQRES 2 B 191 GLY TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG SEQRES 3 B 191 ILE ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG SEQRES 4 B 191 GLY ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU SEQRES 5 B 191 ASP CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO SEQRES 6 B 191 ASN ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY SEQRES 7 B 191 ASP ARG ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER SEQRES 8 B 191 ILE TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR SEQRES 9 B 191 CYS VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE SEQRES 10 B 191 ALA MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU SEQRES 11 B 191 ASP ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU SEQRES 12 B 191 GLU ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN SEQRES 13 B 191 CYS ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SEQRES 14 B 191 SER PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG SEQRES 15 B 191 GLN GLU GLU LYS GLU GLU VAL THR VAL HET HG4 A 401 88 HET CA A 402 1 HET CA B 401 1 HETNAM HG4 1,1'-(BUTANE-1,4-DIYL)BIS{2-[(1-ETHYL-3-METHYL-1H- HETNAM 2 HG4 PYRAZOLE-5-CARBONYL)AMINO]-1H-BENZIMIDAZOLE-5- HETNAM 3 HG4 CARBOXAMIDE} HETNAM CA CALCIUM ION FORMUL 3 HG4 C34 H38 N12 O4 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *15(H2 O) HELIX 1 AA1 ASN A 154 TYR A 167 1 14 HELIX 2 AA2 TYR A 167 LEU A 189 1 23 HELIX 3 AA3 ASN A 211 ASP A 216 1 6 HELIX 4 AA4 THR A 263 GLN A 273 1 11 HELIX 5 AA5 TYR A 274 GLY A 278 5 5 HELIX 6 AA6 SER A 280 ASP A 301 1 22 HELIX 7 AA7 GLU A 304 ASN A 308 1 5 HELIX 8 AA8 SER A 324 VAL A 343 1 20 HELIX 9 AA9 ASN B 154 TYR B 167 1 14 HELIX 10 AB1 TYR B 167 ARG B 191 1 25 HELIX 11 AB2 ASN B 211 ASP B 216 1 6 HELIX 12 AB3 ALA B 262 GLN B 273 1 12 HELIX 13 AB4 TYR B 274 GLY B 278 5 5 HELIX 14 AB5 SER B 280 ASP B 301 1 22 HELIX 15 AB6 GLU B 304 ASN B 308 1 5 HELIX 16 AB7 SER B 324 VAL B 343 1 20 SHEET 1 AA1 5 ILE A 219 LYS A 224 0 SHEET 2 AA1 5 SER A 243 GLU A 249 -1 O ILE A 244 N ASP A 223 SHEET 3 AA1 5 GLN A 252 TYR A 261 -1 O ALA A 254 N LEU A 247 SHEET 4 AA1 5 LEU A 198 PRO A 203 1 N TYR A 199 O VAL A 258 SHEET 5 AA1 5 CYS A 309 TYR A 314 1 O ILE A 312 N LEU A 202 SHEET 1 AA2 5 ILE B 219 LEU B 225 0 SHEET 2 AA2 5 ASN B 242 GLU B 249 -1 O ASN B 242 N LEU B 225 SHEET 3 AA2 5 GLN B 252 TYR B 261 -1 O CYS B 257 N TYR B 245 SHEET 4 AA2 5 LEU B 198 PRO B 203 1 N TYR B 199 O VAL B 258 SHEET 5 AA2 5 CYS B 309 TYR B 314 1 O ARG B 310 N LEU B 198 LINK OD2 ASP A 205 CA CA A 402 1555 1555 2.51 LINK OE1 GLU A 316 CA CA A 402 1555 1555 2.92 LINK OE2 GLU A 316 CA CA A 402 1555 1555 2.39 LINK O VAL A 341 CA CA A 402 1555 2858 2.30 LINK CA CA A 402 O HOH A 504 1555 1555 2.34 LINK CA CA A 402 O HOH A 506 1555 1555 2.43 LINK OD2 ASP B 205 CA CA B 401 1555 2757 2.63 LINK OE1 GLU B 316 CA CA B 401 1555 2757 2.05 LINK O VAL B 341 CA CA B 401 1555 1555 2.07 LINK O THR B 342 CA CA B 401 1555 1555 2.78 LINK CA CA B 401 O HOH B 502 1555 1555 2.34 LINK CA CA B 401 O HOH B 505 1555 1555 2.13 SITE 1 AC1 12 SER A 162 TYR A 163 TYR A 167 SER A 241 SITE 2 AC1 12 THR A 263 PRO A 264 SER B 162 TYR B 163 SITE 3 AC1 12 TYR B 167 TYR B 240 SER B 241 THR B 263 SITE 1 AC2 4 ASP A 205 GLU A 316 HOH A 504 HOH A 506 SITE 1 AC3 4 VAL B 341 THR B 342 HOH B 502 HOH B 505 CRYST1 60.140 73.034 60.275 90.00 96.08 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016628 0.000000 0.001772 0.00000 SCALE2 0.000000 0.013692 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016685 0.00000