HEADER HYDROLASE 03-JUL-18 6DZ8 TITLE CRYSTAL STRUCTURE OF S. AUREUS PENICILLIN BINDING PROTEIN 4 (PBP4) TITLE 2 MUTANT (S75C) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENICILLIN-BINDING PROTEIN 4; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS (STRAIN COL); SOURCE 3 ORGANISM_TAXID: 93062; SOURCE 4 STRAIN: COL; SOURCE 5 GENE: PBP4, SACOL0699; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS HYDROLASE, PENICILLIN BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.A.N.ALEXANDER,N.C.J.STRYNADKA REVDAT 4 11-OCT-23 6DZ8 1 LINK REVDAT 3 08-JAN-20 6DZ8 1 REMARK REVDAT 2 20-FEB-19 6DZ8 1 JRNL REVDAT 1 19-DEC-18 6DZ8 0 JRNL AUTH R.MAYA-MARTINEZ,J.A.N.ALEXANDER,C.F.OTTEN,I.AYALA,D.VOLLMER, JRNL AUTH 2 J.GRAY,C.M.BOUGAULT,A.BURT,C.LAGURI,M.FONVIELLE,M.ARTHUR, JRNL AUTH 3 N.C.J.STRYNADKA,W.VOLLMER,J.P.SIMORRE JRNL TITL RECOGNITION OF PEPTIDOGLYCAN FRAGMENTS BY THE TRANSPEPTIDASE JRNL TITL 2 PBP4 FROMSTAPHYLOCOCCUS AUREUS. JRNL REF FRONT MICROBIOL V. 9 3223 2018 JRNL REFN ESSN 1664-302X JRNL PMID 30713527 JRNL DOI 10.3389/FMICB.2018.03223 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.16 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 59105 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 2925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.1588 - 5.1229 0.99 2739 142 0.1946 0.2285 REMARK 3 2 5.1229 - 4.0697 0.99 2645 151 0.1433 0.1717 REMARK 3 3 4.0697 - 3.5563 0.99 2679 151 0.1397 0.1611 REMARK 3 4 3.5563 - 3.2316 0.99 2694 133 0.1556 0.2186 REMARK 3 5 3.2316 - 3.0002 0.99 2663 138 0.1563 0.2002 REMARK 3 6 3.0002 - 2.8235 0.99 2687 144 0.1622 0.2064 REMARK 3 7 2.8235 - 2.6822 1.00 2681 130 0.1575 0.2283 REMARK 3 8 2.6822 - 2.5655 1.00 2693 137 0.1595 0.2083 REMARK 3 9 2.5655 - 2.4668 1.00 2663 141 0.1547 0.2127 REMARK 3 10 2.4668 - 2.3817 1.00 2704 129 0.1573 0.2142 REMARK 3 11 2.3817 - 2.3073 1.00 2679 150 0.1681 0.2174 REMARK 3 12 2.3073 - 2.2413 1.00 2682 129 0.1766 0.2443 REMARK 3 13 2.2413 - 2.1824 0.99 2637 149 0.1914 0.2344 REMARK 3 14 2.1824 - 2.1291 1.00 2679 139 0.1922 0.2683 REMARK 3 15 2.1291 - 2.0807 1.00 2659 131 0.1941 0.2259 REMARK 3 16 2.0807 - 2.0365 0.99 2667 140 0.2087 0.2628 REMARK 3 17 2.0365 - 1.9957 1.00 2699 125 0.2290 0.2572 REMARK 3 18 1.9957 - 1.9581 1.00 2665 126 0.2466 0.3322 REMARK 3 19 1.9581 - 1.9231 0.99 2654 150 0.2631 0.3005 REMARK 3 20 1.9231 - 1.8905 0.99 2678 145 0.3001 0.2863 REMARK 3 21 1.8905 - 1.8601 0.99 2633 145 0.3245 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.9691 -1.4422 39.8512 REMARK 3 T TENSOR REMARK 3 T11: 0.2724 T22: 0.2014 REMARK 3 T33: 0.1513 T12: -0.0140 REMARK 3 T13: -0.0238 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.3678 L22: 1.8777 REMARK 3 L33: 1.9359 L12: -0.6853 REMARK 3 L13: -0.7561 L23: 0.5110 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.1624 S13: -0.0004 REMARK 3 S21: 0.2967 S22: 0.0205 S23: 0.0504 REMARK 3 S31: 0.0918 S32: -0.0536 S33: 0.0046 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.3825 -24.9898 21.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.3853 T22: 0.2294 REMARK 3 T33: 0.2196 T12: -0.0029 REMARK 3 T13: 0.0143 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.4937 L22: 5.7182 REMARK 3 L33: 3.6294 L12: 3.1361 REMARK 3 L13: -1.8662 L23: -2.6711 REMARK 3 S TENSOR REMARK 3 S11: 0.0689 S12: -0.1824 S13: -0.0223 REMARK 3 S21: -0.1396 S22: 0.0106 S23: 0.0694 REMARK 3 S31: 0.3616 S32: -0.1708 S33: -0.0298 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 296 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5165 -11.6717 31.3751 REMARK 3 T TENSOR REMARK 3 T11: 0.2828 T22: 0.1999 REMARK 3 T33: 0.1584 T12: -0.0062 REMARK 3 T13: 0.0014 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5225 L22: 2.2009 REMARK 3 L33: 0.9945 L12: -0.3440 REMARK 3 L13: -0.1625 L23: 0.7271 REMARK 3 S TENSOR REMARK 3 S11: -0.0645 S12: -0.0710 S13: -0.0917 REMARK 3 S21: 0.2472 S22: 0.0151 S23: -0.0479 REMARK 3 S31: 0.2642 S32: -0.0142 S33: 0.0432 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 297 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4054 17.3220 32.7879 REMARK 3 T TENSOR REMARK 3 T11: 0.2678 T22: 0.2279 REMARK 3 T33: 0.1805 T12: -0.0076 REMARK 3 T13: -0.0386 T23: -0.0260 REMARK 3 L TENSOR REMARK 3 L11: 4.1681 L22: 3.4241 REMARK 3 L33: 1.3796 L12: 2.4591 REMARK 3 L13: -0.8134 L23: -0.6525 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.1369 S13: 0.4445 REMARK 3 S21: -0.0810 S22: 0.0860 S23: 0.0689 REMARK 3 S31: -0.1584 S32: 0.0774 S33: -0.0245 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 25 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5850 -3.3430 1.3641 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.1696 REMARK 3 T33: 0.1514 T12: -0.0110 REMARK 3 T13: -0.0241 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.5053 L22: 1.9124 REMARK 3 L33: 1.7193 L12: -0.7368 REMARK 3 L13: -1.0721 L23: 0.8539 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.0329 S13: -0.0260 REMARK 3 S21: 0.0628 S22: -0.0100 S23: 0.1174 REMARK 3 S31: 0.0695 S32: -0.0700 S33: 0.0438 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 91 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.6383 -25.1560 -16.5784 REMARK 3 T TENSOR REMARK 3 T11: 0.2293 T22: 0.1924 REMARK 3 T33: 0.1501 T12: -0.0176 REMARK 3 T13: -0.0213 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.0638 L22: 5.9712 REMARK 3 L33: 2.3413 L12: 1.4082 REMARK 3 L13: -0.7604 L23: -0.6640 REMARK 3 S TENSOR REMARK 3 S11: 0.0033 S12: -0.0308 S13: -0.1474 REMARK 3 S21: -0.0780 S22: -0.0283 S23: 0.0754 REMARK 3 S31: 0.1190 S32: -0.0600 S33: 0.0428 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 138 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.9389 -21.0919 -2.9548 REMARK 3 T TENSOR REMARK 3 T11: 0.2099 T22: 0.1516 REMARK 3 T33: 0.1641 T12: 0.0178 REMARK 3 T13: -0.0044 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 2.3078 L22: 6.2520 REMARK 3 L33: 3.2197 L12: 1.3678 REMARK 3 L13: 1.0179 L23: 1.2248 REMARK 3 S TENSOR REMARK 3 S11: 0.0638 S12: -0.0905 S13: -0.1510 REMARK 3 S21: 0.2804 S22: 0.0303 S23: -0.1927 REMARK 3 S31: 0.2694 S32: -0.0305 S33: -0.0970 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 205 THROUGH 266 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3897 -8.7760 -10.7911 REMARK 3 T TENSOR REMARK 3 T11: 0.2922 T22: 0.1911 REMARK 3 T33: 0.2066 T12: -0.0096 REMARK 3 T13: -0.0146 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 0.9535 L22: 1.2801 REMARK 3 L33: 1.9110 L12: 0.1397 REMARK 3 L13: 0.6324 L23: 0.9164 REMARK 3 S TENSOR REMARK 3 S11: 0.0149 S12: 0.0717 S13: -0.0534 REMARK 3 S21: -0.1311 S22: 0.0187 S23: 0.1796 REMARK 3 S31: 0.1017 S32: -0.0996 S33: -0.0343 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 267 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1802 10.4754 -4.7548 REMARK 3 T TENSOR REMARK 3 T11: 0.2805 T22: 0.1871 REMARK 3 T33: 0.1720 T12: 0.0214 REMARK 3 T13: 0.0110 T23: 0.0179 REMARK 3 L TENSOR REMARK 3 L11: 2.4812 L22: 2.5288 REMARK 3 L33: 1.0105 L12: 0.8552 REMARK 3 L13: -0.2320 L23: 0.1588 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: 0.1419 S13: 0.3216 REMARK 3 S21: -0.1870 S22: -0.0301 S23: -0.0119 REMARK 3 S31: -0.1281 S32: 0.0718 S33: -0.0119 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235463. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 29.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 1.08600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5TXI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8 MM ZINC CHLORIDE, 80 MM SODIUM REMARK 280 ACETATE PH 5, 100 MM SODIUM FLUORIDE, AND 16% POLYETHYLENE REMARK 280 GLYCOL 6000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 52.25550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.86500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 52.25550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 44.86500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 638 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 662 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HE2 HIS A 382 ZN ZN B 401 2555 1.39 REMARK 500 OD1 ASP A 28 NZ LYS A 119 4456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 74 -133.69 47.85 REMARK 500 GLU A 114 -43.69 72.32 REMARK 500 ARG A 188 -121.33 47.15 REMARK 500 ALA A 230 63.37 -157.16 REMARK 500 LEU A 258 -56.99 -130.22 REMARK 500 ASN A 267 -145.93 54.48 REMARK 500 ALA B 74 -134.84 50.60 REMARK 500 GLU B 114 -38.91 76.89 REMARK 500 ARG B 188 -121.24 47.21 REMARK 500 ALA B 230 60.62 -157.58 REMARK 500 LEU B 258 -61.02 -129.87 REMARK 500 ASN B 267 -147.06 58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 336 OE1 REMARK 620 2 HIS A 382 NE2 103.4 REMARK 620 3 GLU B 336 OE2 116.7 138.3 REMARK 620 4 HIS B 382 NE2 121.5 133.3 5.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 357 OE2 REMARK 620 2 GLU A 357 OE1 38.2 REMARK 620 3 HIS A 362 NE2 90.2 113.3 REMARK 620 4 HOH A 619 O 120.9 118.2 125.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 380 OE1 REMARK 620 2 GLU B 336 OE1 141.4 REMARK 620 3 HOH B 580 O 107.9 102.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 357 OE2 REMARK 620 2 GLU B 357 OE1 36.9 REMARK 620 3 GLU B 357 OE2 0.0 36.9 REMARK 620 4 HIS B 362 NE2 93.7 118.6 93.7 REMARK 620 5 HOH B 651 O 130.4 128.0 130.4 111.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 DBREF1 6DZ8 A 25 383 UNP A0A0H2WY27_STAAC DBREF2 6DZ8 A A0A0H2WY27 25 383 DBREF1 6DZ8 B 25 383 UNP A0A0H2WY27_STAAC DBREF2 6DZ8 B A0A0H2WY27 25 383 SEQADV 6DZ8 CYS A 75 UNP A0A0H2WY2 SER 75 ENGINEERED MUTATION SEQADV 6DZ8 CYS B 75 UNP A0A0H2WY2 SER 75 ENGINEERED MUTATION SEQRES 1 A 359 THR ASN SER ASP VAL THR PRO VAL GLN ALA ALA ASN GLN SEQRES 2 A 359 TYR GLY TYR ALA GLY LEU SER ALA ALA TYR GLU PRO THR SEQRES 3 A 359 SER ALA VAL ASN VAL SER GLN THR GLY GLN LEU LEU TYR SEQRES 4 A 359 GLN TYR ASN ILE ASP THR LYS TRP ASN PRO ALA CYS MET SEQRES 5 A 359 THR LYS LEU MET THR MET TYR LEU THR LEU GLU ALA VAL SEQRES 6 A 359 ASN LYS GLY GLN LEU SER LEU ASP ASP THR VAL THR MET SEQRES 7 A 359 THR ASN LYS GLU TYR ILE MET SER THR LEU PRO GLU LEU SEQRES 8 A 359 SER ASN THR LYS LEU TYR PRO GLY GLN VAL TRP THR ILE SEQRES 9 A 359 ALA ASP LEU LEU GLN ILE THR VAL SER ASN SER SER ASN SEQRES 10 A 359 ALA ALA ALA LEU ILE LEU ALA LYS LYS VAL SER LYS ASN SEQRES 11 A 359 THR SER ASP PHE VAL ASP LEU MET ASN ASN LYS ALA LYS SEQRES 12 A 359 ALA ILE GLY MET LYS ASN THR HIS PHE VAL ASN PRO THR SEQRES 13 A 359 GLY ALA GLU ASN SER ARG LEU ARG THR PHE ALA PRO THR SEQRES 14 A 359 LYS TYR LYS ASP GLN GLU ARG THR VAL THR THR ALA ARG SEQRES 15 A 359 ASP TYR ALA ILE LEU ASP LEU HIS VAL ILE LYS GLU THR SEQRES 16 A 359 PRO LYS ILE LEU ASP PHE THR LYS GLN LEU ALA PRO THR SEQRES 17 A 359 THR HIS ALA VAL THR TYR TYR THR PHE ASN PHE SER LEU SEQRES 18 A 359 GLU GLY ALA LYS MET SER LEU PRO GLY THR ASP GLY LEU SEQRES 19 A 359 LYS THR GLY SER SER ASP THR ALA ASN TYR ASN HIS THR SEQRES 20 A 359 ILE THR THR LYS ARG GLY LYS PHE ARG ILE ASN GLN VAL SEQRES 21 A 359 ILE MET GLY ALA GLY ASP TYR LYS ASN LEU GLY GLY GLU SEQRES 22 A 359 LYS GLN ARG ASN MET MET GLY ASN ALA LEU MET GLU ARG SEQRES 23 A 359 SER PHE ASP GLN TYR LYS TYR VAL LYS ILE LEU SER LYS SEQRES 24 A 359 GLY GLU GLN ARG ILE ASN GLY LYS LYS TYR TYR VAL GLU SEQRES 25 A 359 ASN ASP LEU TYR ASP VAL LEU PRO SER ASP PHE SER LYS SEQRES 26 A 359 LYS ASP TYR LYS LEU VAL VAL GLU ASP GLY LYS VAL HIS SEQRES 27 A 359 ALA ASP TYR PRO ARG GLU PHE ILE ASN LYS ASP TYR GLY SEQRES 28 A 359 PRO PRO THR VAL GLU VAL HIS GLN SEQRES 1 B 359 THR ASN SER ASP VAL THR PRO VAL GLN ALA ALA ASN GLN SEQRES 2 B 359 TYR GLY TYR ALA GLY LEU SER ALA ALA TYR GLU PRO THR SEQRES 3 B 359 SER ALA VAL ASN VAL SER GLN THR GLY GLN LEU LEU TYR SEQRES 4 B 359 GLN TYR ASN ILE ASP THR LYS TRP ASN PRO ALA CYS MET SEQRES 5 B 359 THR LYS LEU MET THR MET TYR LEU THR LEU GLU ALA VAL SEQRES 6 B 359 ASN LYS GLY GLN LEU SER LEU ASP ASP THR VAL THR MET SEQRES 7 B 359 THR ASN LYS GLU TYR ILE MET SER THR LEU PRO GLU LEU SEQRES 8 B 359 SER ASN THR LYS LEU TYR PRO GLY GLN VAL TRP THR ILE SEQRES 9 B 359 ALA ASP LEU LEU GLN ILE THR VAL SER ASN SER SER ASN SEQRES 10 B 359 ALA ALA ALA LEU ILE LEU ALA LYS LYS VAL SER LYS ASN SEQRES 11 B 359 THR SER ASP PHE VAL ASP LEU MET ASN ASN LYS ALA LYS SEQRES 12 B 359 ALA ILE GLY MET LYS ASN THR HIS PHE VAL ASN PRO THR SEQRES 13 B 359 GLY ALA GLU ASN SER ARG LEU ARG THR PHE ALA PRO THR SEQRES 14 B 359 LYS TYR LYS ASP GLN GLU ARG THR VAL THR THR ALA ARG SEQRES 15 B 359 ASP TYR ALA ILE LEU ASP LEU HIS VAL ILE LYS GLU THR SEQRES 16 B 359 PRO LYS ILE LEU ASP PHE THR LYS GLN LEU ALA PRO THR SEQRES 17 B 359 THR HIS ALA VAL THR TYR TYR THR PHE ASN PHE SER LEU SEQRES 18 B 359 GLU GLY ALA LYS MET SER LEU PRO GLY THR ASP GLY LEU SEQRES 19 B 359 LYS THR GLY SER SER ASP THR ALA ASN TYR ASN HIS THR SEQRES 20 B 359 ILE THR THR LYS ARG GLY LYS PHE ARG ILE ASN GLN VAL SEQRES 21 B 359 ILE MET GLY ALA GLY ASP TYR LYS ASN LEU GLY GLY GLU SEQRES 22 B 359 LYS GLN ARG ASN MET MET GLY ASN ALA LEU MET GLU ARG SEQRES 23 B 359 SER PHE ASP GLN TYR LYS TYR VAL LYS ILE LEU SER LYS SEQRES 24 B 359 GLY GLU GLN ARG ILE ASN GLY LYS LYS TYR TYR VAL GLU SEQRES 25 B 359 ASN ASP LEU TYR ASP VAL LEU PRO SER ASP PHE SER LYS SEQRES 26 B 359 LYS ASP TYR LYS LEU VAL VAL GLU ASP GLY LYS VAL HIS SEQRES 27 B 359 ALA ASP TYR PRO ARG GLU PHE ILE ASN LYS ASP TYR GLY SEQRES 28 B 359 PRO PRO THR VAL GLU VAL HIS GLN HET ZN A 401 1 HET ZN A 402 1 HET ZN B 401 1 HET ZN B 402 1 HETNAM ZN ZINC ION FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *303(H2 O) HELIX 1 AA1 THR A 30 TYR A 38 1 9 HELIX 2 AA2 SER A 44 GLU A 48 5 5 HELIX 3 AA3 PRO A 73 CYS A 75 5 3 HELIX 4 AA4 MET A 76 LYS A 91 1 16 HELIX 5 AA5 THR A 103 THR A 111 1 9 HELIX 6 AA6 ILE A 128 ASN A 138 1 11 HELIX 7 AA7 SER A 140 SER A 152 1 13 HELIX 8 AA8 ASN A 154 ILE A 169 1 16 HELIX 9 AA9 GLU A 183 ARG A 188 1 6 HELIX 10 AB1 THR A 189 ALA A 191 5 3 HELIX 11 AB2 PRO A 192 LYS A 196 5 5 HELIX 12 AB3 THR A 204 THR A 219 1 16 HELIX 13 AB4 LYS A 221 LYS A 227 1 7 HELIX 14 AB5 GLY A 296 GLN A 314 1 19 HELIX 15 AB6 THR B 30 TYR B 38 1 9 HELIX 16 AB7 SER B 44 GLU B 48 5 5 HELIX 17 AB8 PRO B 73 CYS B 75 5 3 HELIX 18 AB9 MET B 76 LYS B 91 1 16 HELIX 19 AC1 THR B 103 SER B 110 1 8 HELIX 20 AC2 ILE B 128 ASN B 138 1 11 HELIX 21 AC3 SER B 140 SER B 152 1 13 HELIX 22 AC4 ASN B 154 ILE B 169 1 16 HELIX 23 AC5 GLU B 183 ARG B 188 1 6 HELIX 24 AC6 THR B 189 ALA B 191 5 3 HELIX 25 AC7 PRO B 192 LYS B 196 5 5 HELIX 26 AC8 THR B 204 THR B 219 1 16 HELIX 27 AC9 LYS B 221 LYS B 227 1 7 HELIX 28 AD1 GLY B 296 GLN B 314 1 19 SHEET 1 AA1 5 LEU A 61 TYR A 65 0 SHEET 2 AA1 5 SER A 51 SER A 56 -1 N ASN A 54 O LEU A 62 SHEET 3 AA1 5 PHE A 279 ALA A 288 -1 O ASN A 282 N VAL A 55 SHEET 4 AA1 5 ASN A 267 ARG A 276 -1 N ILE A 272 O GLN A 283 SHEET 5 AA1 5 THR A 255 SER A 263 -1 N GLY A 261 O ASN A 269 SHEET 1 AA2 2 THR A 99 THR A 101 0 SHEET 2 AA2 2 VAL A 125 THR A 127 -1 O TRP A 126 N VAL A 100 SHEET 1 AA3 2 THR A 232 THR A 233 0 SHEET 2 AA3 2 VAL A 236 THR A 237 -1 O VAL A 236 N THR A 233 SHEET 1 AA4 2 TYR A 315 LEU A 321 0 SHEET 2 AA4 2 LEU A 339 PRO A 344 -1 O LEU A 339 N ILE A 320 SHEET 1 AA5 5 GLY A 324 ILE A 328 0 SHEET 2 AA5 5 LYS A 331 VAL A 335 -1 O TYR A 333 N GLN A 326 SHEET 3 AA5 5 VAL A 379 HIS A 382 -1 O HIS A 382 N TYR A 334 SHEET 4 AA5 5 LYS A 360 ASP A 364 -1 N VAL A 361 O VAL A 379 SHEET 5 AA5 5 LYS A 353 GLU A 357 -1 N LYS A 353 O ASP A 364 SHEET 1 AA6 5 LEU B 61 TYR B 65 0 SHEET 2 AA6 5 SER B 51 SER B 56 -1 N ASN B 54 O LEU B 62 SHEET 3 AA6 5 PHE B 279 ALA B 288 -1 O ASN B 282 N VAL B 55 SHEET 4 AA6 5 ASN B 267 ARG B 276 -1 N ILE B 272 O GLN B 283 SHEET 5 AA6 5 THR B 255 SER B 263 -1 N GLY B 261 O ASN B 269 SHEET 1 AA7 2 THR B 99 THR B 101 0 SHEET 2 AA7 2 VAL B 125 THR B 127 -1 O TRP B 126 N VAL B 100 SHEET 1 AA8 2 THR B 232 THR B 233 0 SHEET 2 AA8 2 VAL B 236 THR B 237 -1 O VAL B 236 N THR B 233 SHEET 1 AA9 2 TYR B 315 LEU B 321 0 SHEET 2 AA9 2 LEU B 339 PRO B 344 -1 O LEU B 339 N ILE B 320 SHEET 1 AB1 5 GLY B 324 ILE B 328 0 SHEET 2 AB1 5 LYS B 331 VAL B 335 -1 O TYR B 333 N GLN B 326 SHEET 3 AB1 5 VAL B 379 HIS B 382 -1 O HIS B 382 N TYR B 334 SHEET 4 AB1 5 LYS B 360 ASP B 364 -1 N VAL B 361 O VAL B 379 SHEET 5 AB1 5 LYS B 353 GLU B 357 -1 N LYS B 353 O ASP B 364 LINK OE1 GLU A 336 ZN ZN B 401 1555 2555 1.98 LINK OE2 GLU A 357 ZN ZN A 401 1555 1555 1.72 LINK OE1 GLU A 357 ZN ZN A 401 1555 2556 2.29 LINK NE2 HIS A 362 ZN ZN A 401 1555 1555 2.42 LINK OE1 GLU A 380 ZN ZN A 402 1555 1555 1.98 LINK NE2 HIS A 382 ZN ZN B 401 1555 2555 2.17 LINK ZN ZN A 401 O HOH A 619 1555 2556 2.26 LINK ZN ZN A 402 OE1 GLU B 336 2555 1555 2.17 LINK ZN ZN A 402 O HOH B 580 1555 2555 1.89 LINK OE2 GLU B 336 ZN ZN B 401 1555 1555 1.92 LINK OE2 GLU B 357 ZN ZN B 402 1555 1555 1.73 LINK OE1 GLU B 357 ZN ZN B 402 1555 2555 2.21 LINK OE2 GLU B 357 ZN ZN B 402 1555 2555 2.64 LINK NE2 HIS B 362 ZN ZN B 402 1555 1555 2.26 LINK NE2 HIS B 382 ZN ZN B 401 1555 1555 2.01 LINK ZN ZN B 402 O HOH B 651 1555 2555 2.18 CISPEP 1 GLY A 257 LEU A 258 0 4.55 CISPEP 2 GLY B 257 LEU B 258 0 3.88 SITE 1 AC1 3 GLU A 357 HIS A 362 HOH A 619 SITE 1 AC2 5 GLU A 336 GLU A 380 GLU B 336 HOH B 580 SITE 2 AC2 5 HOH B 598 SITE 1 AC3 5 GLU A 336 HIS A 382 TYR B 334 GLU B 336 SITE 2 AC3 5 HIS B 382 SITE 1 AC4 3 GLU B 357 HIS B 362 HOH B 651 CRYST1 104.511 89.730 77.489 90.00 98.09 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009568 0.000000 0.001360 0.00000 SCALE2 0.000000 0.011145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013035 0.00000