HEADER SIGNALING PROTEIN 04-JUL-18 6DZH TITLE HRAS G13D BOUND TO GDP (H13GDP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GTPASE HRAS; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 1-166; COMPND 5 SYNONYM: H-RAS-1,HA-RAS,TRANSFORMING PROTEIN P21,C-H-RAS,P21RAS; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HRAS, HRAS1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS ONCOGENE, RAS, P21, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.W.JOHNSON,C.MATTOS REVDAT 4 11-OCT-23 6DZH 1 REMARK LINK REVDAT 3 27-NOV-19 6DZH 1 REMARK REVDAT 2 04-SEP-19 6DZH 1 AUTHOR JRNL REMARK REVDAT 1 10-JUL-19 6DZH 0 JRNL AUTH C.W.JOHNSON,Y.J.LIN,D.REID,J.PARKER,S.PAVLOPOULOS, JRNL AUTH 2 P.DISCHINGER,C.GRAVEEL,A.J.AGUIRRE,M.STEENSMA,K.M.HAIGIS, JRNL AUTH 3 C.MATTOS JRNL TITL ISOFORM-SPECIFIC DESTABILIZATION OF THE ACTIVE SITE REVEALS JRNL TITL 2 A MOLECULAR MECHANISM OF INTRINSIC ACTIVATION OF KRAS G13D. JRNL REF CELL REP V. 28 1538 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 31390567 JRNL DOI 10.1016/J.CELREP.2019.07.026 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.70 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 87.5 REMARK 3 NUMBER OF REFLECTIONS : 25252 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6DZH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235359. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25256 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 47.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.59600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.11.1_2575 REMARK 200 STARTING MODEL: 6E6P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5.9% STABILIZATION BUFFER (20 MM REMARK 280 HEPES, 50 MM NACL, 20 MM MGCL2, PH 7.5) 188.2 MM CALCIUM ACETATE REMARK 280 18.8% PEG 3350 CRYSTALS WERE GROWN IN 2UL BY 2UL DROPS OF MOTHER REMARK 280 LIQUOR TO PROTEIN (7.7MG/ML) CRYOPROTECTANT FOR CRYSTAL REMARK 280 DIFFRACTION: 70% MOTHER LIQUOR AND 30% GLYCEROL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.28550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.43050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.70500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.43050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.28550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.70500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 36 REMARK 465 GLY B 60 REMARK 465 GLN B 61 REMARK 465 GLU B 62 REMARK 465 GLU B 63 REMARK 465 TYR B 64 REMARK 465 SER B 65 REMARK 465 ALA B 66 REMARK 465 MET B 67 REMARK 465 ARG B 68 REMARK 465 ASP B 69 REMARK 465 GLN B 70 REMARK 465 TYR B 71 REMARK 465 ASP C 30 REMARK 465 GLU C 31 REMARK 465 TYR C 32 REMARK 465 ASP C 33 REMARK 465 PRO C 34 REMARK 465 THR C 35 REMARK 465 ILE C 36 REMARK 465 GLU C 37 REMARK 465 ASP C 38 REMARK 465 SER C 65 REMARK 465 ALA C 66 REMARK 465 MET C 67 REMARK 465 ARG C 68 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 33 CG OD1 OD2 REMARK 470 GLU A 63 CG CD OE1 OE2 REMARK 470 GLN A 95 CG CD OE1 NE2 REMARK 470 ARG A 128 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 5 CE NZ REMARK 470 THR B 35 OG1 CG2 REMARK 470 GLU B 37 CG CD OE1 OE2 REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 THR B 74 OG1 CG2 REMARK 470 GLN B 95 CG CD OE1 NE2 REMARK 470 ARG B 102 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 103 CG1 CG2 REMARK 470 ASP B 105 CG OD1 OD2 REMARK 470 ARG B 128 CD NE CZ NH1 NH2 REMARK 470 ARG B 135 CD NE CZ NH1 NH2 REMARK 470 LYS C 5 CG CD CE NZ REMARK 470 VAL C 29 CG1 CG2 REMARK 470 ARG C 41 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 56 CG CD1 CD2 REMARK 470 GLU C 62 CG CD OE1 OE2 REMARK 470 ASP C 69 CG OD1 OD2 REMARK 470 TYR C 71 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP C 107 CG OD1 OD2 REMARK 470 ASP C 108 CG OD1 OD2 REMARK 470 GLU C 126 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 39 O ASP B 30 2.07 REMARK 500 O ASP A 30 O HOH A 301 2.08 REMARK 500 O GLU A 31 O HOH A 301 2.11 REMARK 500 NE2 GLN A 150 O HOH A 302 2.13 REMARK 500 OE1 GLU B 98 O HOH B 301 2.16 REMARK 500 OD1 ASP B 92 O HOH B 302 2.16 REMARK 500 OE2 GLU A 49 NH2 ARG C 128 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 360 O HOH C 359 2554 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 29 89.23 -65.92 REMARK 500 GLU A 31 87.82 38.69 REMARK 500 ASP A 108 64.28 -116.80 REMARK 500 LYS A 117 34.56 77.64 REMARK 500 ARG A 149 -0.62 78.38 REMARK 500 ASP B 30 79.69 54.29 REMARK 500 GLU B 31 -8.31 70.66 REMARK 500 GLU B 37 -71.78 -136.23 REMARK 500 GLU C 63 -166.66 179.68 REMARK 500 ARG C 149 -3.15 74.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 17 OG REMARK 620 2 GDP A 201 O3B 92.8 REMARK 620 3 HOH A 321 O 87.1 85.8 REMARK 620 4 HOH A 325 O 82.1 97.0 168.9 REMARK 620 5 HOH A 330 O 88.6 161.5 75.8 101.4 REMARK 620 6 HOH A 355 O 168.0 95.4 84.8 105.5 80.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 204 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 309 O REMARK 620 2 HOH A 339 O 87.6 REMARK 620 3 ASP B 13 OD1 85.3 87.2 REMARK 620 4 ASP B 33 OD2 87.3 85.9 170.0 REMARK 620 5 GDP B 201 O1B 177.8 90.4 93.7 93.5 REMARK 620 6 GDP B 201 O1A 97.8 163.0 109.2 78.3 84.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 17 OG REMARK 620 2 ASP B 33 OD1 77.9 REMARK 620 3 ASP B 33 OD2 126.0 50.8 REMARK 620 4 GDP B 201 O3B 82.7 108.5 97.0 REMARK 620 5 HOH B 309 O 62.8 137.1 171.3 83.9 REMARK 620 6 HOH B 355 O 88.9 82.7 98.9 164.1 80.2 REMARK 620 7 HOH B 358 O 152.6 128.9 81.2 91.9 90.0 89.3 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 138 O REMARK 620 2 HOH B 319 O 111.6 REMARK 620 3 HOH B 321 O 161.2 86.5 REMARK 620 4 HOH B 322 O 87.7 94.1 85.9 REMARK 620 5 HOH B 346 O 70.6 95.7 114.1 158.2 REMARK 620 6 HOH B 360 O 97.8 140.2 63.8 59.8 119.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 3 O REMARK 620 2 GLU C 76 OE1 80.5 REMARK 620 3 GLU C 76 OE2 120.7 47.5 REMARK 620 4 HOH C 341 O 78.3 83.2 70.5 REMARK 620 5 HOH C 375 O 92.8 79.2 101.3 161.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 202 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER C 17 OG REMARK 620 2 GDP C 201 O1B 75.8 REMARK 620 3 HOH C 314 O 75.5 86.9 REMARK 620 4 HOH C 348 O 113.6 107.9 164.0 REMARK 620 5 HOH C 366 O 87.7 162.2 82.6 84.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DTT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GDP C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG C 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E6C RELATED DB: PDB REMARK 900 RELATED ID: 6E6P RELATED DB: PDB REMARK 900 RELATED ID: 6E6H RELATED DB: PDB REMARK 900 RELATED ID: 6E6F RELATED DB: PDB REMARK 900 RELATED ID: 6E6G RELATED DB: PDB DBREF 6DZH A 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6DZH B 1 166 UNP P01112 RASH_HUMAN 1 166 DBREF 6DZH C 1 166 UNP P01112 RASH_HUMAN 1 166 SEQADV 6DZH ASP A 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQADV 6DZH ASP B 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQADV 6DZH ASP C 13 UNP P01112 GLY 13 ENGINEERED MUTATION SEQRES 1 A 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 A 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 A 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 A 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 A 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 A 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 A 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 A 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 A 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 A 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 A 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 A 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 A 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 B 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 B 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 B 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 B 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 B 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 B 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 B 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 B 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 B 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 B 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 B 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 B 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 B 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS SEQRES 1 C 166 MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA GLY ASP SEQRES 2 C 166 VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN ASN SEQRES 3 C 166 HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP SER SEQRES 4 C 166 TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR CYS LEU SEQRES 5 C 166 LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR SER SEQRES 6 C 166 ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY PHE SEQRES 7 C 166 LEU CYS VAL PHE ALA ILE ASN ASN THR LYS SER PHE GLU SEQRES 8 C 166 ASP ILE HIS GLN TYR ARG GLU GLN ILE LYS ARG VAL LYS SEQRES 9 C 166 ASP SER ASP ASP VAL PRO MET VAL LEU VAL GLY ASN LYS SEQRES 10 C 166 CYS ASP LEU ALA ALA ARG THR VAL GLU SER ARG GLN ALA SEQRES 11 C 166 GLN ASP LEU ALA ARG SER TYR GLY ILE PRO TYR ILE GLU SEQRES 12 C 166 THR SER ALA LYS THR ARG GLN GLY VAL GLU ASP ALA PHE SEQRES 13 C 166 TYR THR LEU VAL ARG GLU ILE ARG GLN HIS HET GDP A 201 28 HET MG A 202 1 HET GOL A 203 6 HET GDP B 201 28 HET MG B 202 1 HET MG B 203 1 HET CA B 204 1 HET DTT B 205 16 HET GDP C 201 28 HET MG C 202 1 HET CA C 203 1 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM GOL GLYCEROL HETNAM CA CALCIUM ION HETNAM DTT 2,3-DIHYDROXY-1,4-DITHIOBUTANE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN DTT 1,4-DITHIOTHREITOL FORMUL 4 GDP 3(C10 H15 N5 O11 P2) FORMUL 5 MG 4(MG 2+) FORMUL 6 GOL C3 H8 O3 FORMUL 10 CA 2(CA 2+) FORMUL 11 DTT C4 H10 O2 S2 FORMUL 15 HOH *246(H2 O) HELIX 1 AA1 GLY A 15 ASN A 26 1 12 HELIX 2 AA2 MET A 67 GLY A 75 1 9 HELIX 3 AA3 ASN A 86 LYS A 104 1 19 HELIX 4 AA4 GLU A 126 GLY A 138 1 13 HELIX 5 AA5 GLY A 151 HIS A 166 1 16 HELIX 6 AA6 GLY B 15 ASN B 26 1 12 HELIX 7 AA7 ASN B 86 ASP B 92 1 7 HELIX 8 AA8 ASP B 92 LYS B 104 1 13 HELIX 9 AA9 GLU B 126 GLY B 138 1 13 HELIX 10 AB1 GLY B 151 HIS B 166 1 16 HELIX 11 AB2 GLY C 15 ASN C 26 1 12 HELIX 12 AB3 GLN C 70 GLY C 75 1 6 HELIX 13 AB4 ASN C 86 ASP C 92 1 7 HELIX 14 AB5 ASP C 92 ASP C 105 1 14 HELIX 15 AB6 GLU C 126 GLY C 138 1 13 HELIX 16 AB7 GLY C 151 HIS C 166 1 16 SHEET 1 AA1 6 SER A 39 ILE A 46 0 SHEET 2 AA1 6 GLU A 49 ASP A 57 -1 O CYS A 51 N VAL A 44 SHEET 3 AA1 6 THR A 2 GLY A 10 1 N LEU A 6 O ASP A 54 SHEET 4 AA1 6 GLY A 77 ALA A 83 1 O LEU A 79 N VAL A 7 SHEET 5 AA1 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82 SHEET 6 AA1 6 TYR A 141 GLU A 143 1 O ILE A 142 N LEU A 113 SHEET 1 AA2 6 TYR B 40 ILE B 46 0 SHEET 2 AA2 6 GLU B 49 ASP B 57 -1 O LEU B 53 N LYS B 42 SHEET 3 AA2 6 GLU B 3 VAL B 9 1 N LEU B 6 O ASP B 54 SHEET 4 AA2 6 GLY B 77 ALA B 83 1 O LEU B 79 N VAL B 7 SHEET 5 AA2 6 MET B 111 ASN B 116 1 O VAL B 112 N CYS B 80 SHEET 6 AA2 6 TYR B 141 GLU B 143 1 O ILE B 142 N LEU B 113 SHEET 1 AA3 6 TYR C 40 ILE C 46 0 SHEET 2 AA3 6 GLU C 49 ASP C 57 -1 O LEU C 53 N LYS C 42 SHEET 3 AA3 6 GLU C 3 GLY C 10 1 N TYR C 4 O LEU C 52 SHEET 4 AA3 6 GLY C 77 ALA C 83 1 O LEU C 79 N VAL C 9 SHEET 5 AA3 6 MET C 111 ASN C 116 1 O ASN C 116 N PHE C 82 SHEET 6 AA3 6 TYR C 141 GLU C 143 1 O ILE C 142 N LEU C 113 LINK OG SER A 17 MG MG A 202 1555 1555 2.17 LINK O3B GDP A 201 MG MG A 202 1555 1555 2.07 LINK MG MG A 202 O HOH A 321 1555 1555 2.37 LINK MG MG A 202 O HOH A 325 1555 1555 2.23 LINK MG MG A 202 O HOH A 330 1555 1555 2.02 LINK MG MG A 202 O HOH A 355 1555 1555 2.11 LINK O HOH A 309 CA CA B 204 1555 1555 2.41 LINK O HOH A 339 CA CA B 204 1555 1555 2.47 LINK OD1 ASP B 13 CA CA B 204 1555 1555 2.77 LINK OG SER B 17 MG MG B 203 1555 1555 2.44 LINK OD1 ASP B 33 MG MG B 203 1555 1555 2.47 LINK OD2 ASP B 33 MG MG B 203 1555 1555 2.62 LINK OD2 ASP B 33 CA CA B 204 1555 1555 2.43 LINK O GLY B 138 MG MG B 202 1555 1555 2.16 LINK O3B GDP B 201 MG MG B 203 1555 1555 2.27 LINK O1B GDP B 201 CA CA B 204 1555 1555 2.39 LINK O1A GDP B 201 CA CA B 204 1555 1555 2.30 LINK MG MG B 202 O HOH B 319 1555 1555 2.13 LINK MG MG B 202 O HOH B 321 1555 1555 2.55 LINK MG MG B 202 O HOH B 322 1555 1555 2.78 LINK MG MG B 202 O HOH B 346 1555 1555 2.66 LINK MG MG B 202 O HOH B 360 1555 1555 2.02 LINK MG MG B 203 O HOH B 309 1555 1555 2.17 LINK MG MG B 203 O HOH B 355 1555 1555 2.17 LINK MG MG B 203 O HOH B 358 1555 1555 2.32 LINK O GLU C 3 CA CA C 203 1555 1555 2.35 LINK OG SER C 17 MG MG C 202 1555 1555 2.30 LINK OE1 GLU C 76 CA CA C 203 1555 1555 2.83 LINK OE2 GLU C 76 CA CA C 203 1555 1555 2.61 LINK O1B GDP C 201 MG MG C 202 1555 1555 2.31 LINK MG MG C 202 O HOH C 314 1555 1555 1.78 LINK MG MG C 202 O HOH C 348 1555 1555 2.01 LINK MG MG C 202 O HOH C 366 1555 1555 2.24 LINK CA CA C 203 O HOH C 341 1555 1555 2.30 LINK CA CA C 203 O HOH C 375 1555 1555 2.49 SITE 1 AC1 21 ASP A 13 VAL A 14 GLY A 15 LYS A 16 SITE 2 AC1 21 SER A 17 ALA A 18 PHE A 28 VAL A 29 SITE 3 AC1 21 GLU A 31 ASN A 116 LYS A 117 ASP A 119 SITE 4 AC1 21 LEU A 120 SER A 145 ALA A 146 LYS A 147 SITE 5 AC1 21 MG A 202 HOH A 313 HOH A 321 HOH A 355 SITE 6 AC1 21 HOH A 365 SITE 1 AC2 6 SER A 17 GDP A 201 HOH A 321 HOH A 325 SITE 2 AC2 6 HOH A 330 HOH A 355 SITE 1 AC3 5 ASN A 85 ALA A 122 PHE C 90 GLU C 91 SITE 2 AC3 5 HIS C 94 SITE 1 AC4 23 ARG A 41 ASP B 13 VAL B 14 GLY B 15 SITE 2 AC4 23 LYS B 16 SER B 17 ALA B 18 PHE B 28 SITE 3 AC4 23 ASP B 30 GLU B 31 ASP B 33 ASN B 116 SITE 4 AC4 23 LYS B 117 ASP B 119 LEU B 120 SER B 145 SITE 5 AC4 23 ALA B 146 LYS B 147 MG B 203 CA B 204 SITE 6 AC4 23 HOH B 309 HOH B 351 HOH B 352 SITE 1 AC5 7 TYR A 32 GLY B 138 HOH B 319 HOH B 321 SITE 2 AC5 7 HOH B 322 HOH B 346 HOH B 360 SITE 1 AC6 6 SER B 17 ASP B 33 GDP B 201 HOH B 309 SITE 2 AC6 6 HOH B 355 HOH B 358 SITE 1 AC7 5 HOH A 309 HOH A 339 ASP B 13 ASP B 33 SITE 2 AC7 5 GDP B 201 SITE 1 AC8 9 THR A 124 GLU A 126 GLN A 129 HOH A 371 SITE 2 AC8 9 THR B 87 THR B 124 GLN B 129 HOH B 306 SITE 3 AC8 9 HOH C 309 SITE 1 AC9 20 ASP C 13 VAL C 14 GLY C 15 LYS C 16 SITE 2 AC9 20 SER C 17 ALA C 18 PHE C 28 ASN C 116 SITE 3 AC9 20 LYS C 117 ASP C 119 LEU C 120 SER C 145 SITE 4 AC9 20 ALA C 146 LYS C 147 MG C 202 HOH C 302 SITE 5 AC9 20 HOH C 314 HOH C 316 HOH C 327 HOH C 348 SITE 1 AD1 5 SER C 17 GDP C 201 HOH C 314 HOH C 348 SITE 2 AD1 5 HOH C 366 SITE 1 AD2 4 GLU C 3 GLU C 76 HOH C 341 HOH C 375 CRYST1 60.571 71.410 94.861 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016510 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014004 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010542 0.00000