HEADER IMMUNE SYSTEM 09-JUL-18 6E1I TITLE HLA-A*0201 SINGLE CHAIN TRIMER WITH MURINE H2K ALPHA 3 DOMAIN AND TITLE 2 HPV.16 E7 PEPTIDE YMLDLQPET COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA-A*0201 SINGLE CHAIN TRIMER WITH MURINE H2K ALPHA 3 COMPND 3 DOMAIN AND HPV.16 E7 PEPTIDE YMLDLQPET; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: MHC CLASS I ANTIGEN A*2,H-2K(D); COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HUMAN, MOUSE; SOURCE 4 ORGANISM_TAXID: 9606, 10090; SOURCE 5 GENE: B2M, HLA-A, HLAA, H2-K1, H2-K; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS HLA, SINGLE CHAIN TRIMER, HPV, YMLDLQPET, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.A.K.FINTON,D.V.RUSNAC REVDAT 2 11-OCT-23 6E1I 1 JRNL REVDAT 1 17-JUL-19 6E1I 0 JRNL AUTH K.A.K.FINTON,D.V.RUSNAC JRNL TITL EFFECTS OF HLA SINGLE CHAIN TRIMER DESIGN ON PEPTIDE JRNL TITL 2 PRESENTATION AND STABILITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 30608 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1664 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2172 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2380 REMARK 3 BIN FREE R VALUE SET COUNT : 127 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.60000 REMARK 3 B22 (A**2) : -1.21000 REMARK 3 B33 (A**2) : 2.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.911 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.929 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3186 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2740 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4343 ; 1.159 ; 1.920 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6319 ; 0.863 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 390 ; 5.857 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;30.002 ;22.692 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 472 ;11.426 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;12.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 452 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3606 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 724 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1557 ; 0.878 ; 2.894 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1556 ; 0.878 ; 2.892 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1942 ; 1.564 ; 4.869 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1943 ; 1.564 ; 4.871 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 0.926 ; 2.919 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1630 ; 0.926 ; 2.921 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2400 ; 1.606 ; 4.893 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3494 ; 4.150 ;25.066 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3467 ; 4.061 ;24.789 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 119 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1185 89.3892 28.3798 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.1075 REMARK 3 T33: 0.0716 T12: -0.0050 REMARK 3 T13: -0.0024 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.6883 L22: 0.8650 REMARK 3 L33: 0.3649 L12: -0.5882 REMARK 3 L13: -0.7064 L23: 0.4460 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.1280 S13: 0.0776 REMARK 3 S21: 0.0279 S22: 0.1319 S23: -0.1570 REMARK 3 S31: 0.0179 S32: -0.0197 S33: -0.0831 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 120 A 335 REMARK 3 ORIGIN FOR THE GROUP (A): -33.1557 92.9801 38.4117 REMARK 3 T TENSOR REMARK 3 T11: 0.1036 T22: 0.0814 REMARK 3 T33: 0.0413 T12: -0.0217 REMARK 3 T13: 0.0059 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.6324 L22: 0.8634 REMARK 3 L33: 0.0265 L12: 0.2376 REMARK 3 L13: 0.0685 L23: -0.0917 REMARK 3 S TENSOR REMARK 3 S11: -0.0310 S12: 0.0243 S13: 0.0010 REMARK 3 S21: 0.0770 S22: 0.0400 S23: 0.0631 REMARK 3 S31: -0.0271 S32: 0.0039 S33: -0.0091 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 336 A 406 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3630 71.2941 41.0529 REMARK 3 T TENSOR REMARK 3 T11: 0.0899 T22: 0.0583 REMARK 3 T33: 0.2402 T12: 0.0329 REMARK 3 T13: -0.0574 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 5.4823 L22: 1.4550 REMARK 3 L33: 0.6835 L12: -0.9461 REMARK 3 L13: 1.3464 L23: -0.9012 REMARK 3 S TENSOR REMARK 3 S11: -0.2527 S12: -0.3408 S13: -0.5739 REMARK 3 S21: 0.1999 S22: 0.1761 S23: -0.2805 REMARK 3 S31: -0.1614 S32: -0.1485 S33: 0.0765 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 407 A 422 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4396 61.2328 38.6860 REMARK 3 T TENSOR REMARK 3 T11: 0.0470 T22: 0.0976 REMARK 3 T33: 0.3787 T12: 0.0490 REMARK 3 T13: 0.0045 T23: 0.1251 REMARK 3 L TENSOR REMARK 3 L11: 3.9928 L22: 5.5225 REMARK 3 L33: 2.3793 L12: -4.4619 REMARK 3 L13: -1.2055 L23: 2.3654 REMARK 3 S TENSOR REMARK 3 S11: -0.2218 S12: -0.2763 S13: 0.3047 REMARK 3 S21: 0.3846 S22: 0.4223 S23: -0.3086 REMARK 3 S31: 0.3171 S32: 0.2286 S33: -0.2004 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI(220) ASYMMETRIC CUT SINGLE REMARK 200 CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32318 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BZ9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 25% PEG 6000, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.09750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.58250 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.09750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.58250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLU A -18 REMARK 465 THR A -17 REMARK 465 ASP A -16 REMARK 465 THR A -15 REMARK 465 LEU A -14 REMARK 465 LEU A -13 REMARK 465 LEU A -12 REMARK 465 TRP A -11 REMARK 465 VAL A -10 REMARK 465 LEU A -9 REMARK 465 LEU A -8 REMARK 465 LEU A -7 REMARK 465 TRP A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 THR A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 13 REMARK 465 SER A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 MET A 123 REMARK 465 GLY A 124 REMARK 465 GLY A 125 REMARK 465 GLY A 126 REMARK 465 GLY A 127 REMARK 465 SER A 128 REMARK 465 GLY A 129 REMARK 465 GLY A 130 REMARK 465 GLY A 131 REMARK 465 GLY A 132 REMARK 465 SER A 133 REMARK 465 GLY A 134 REMARK 465 GLY A 135 REMARK 465 GLY A 136 REMARK 465 GLY A 137 REMARK 465 SER A 138 REMARK 465 GLY A 139 REMARK 465 GLY A 140 REMARK 465 GLY A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 4 CG OD1 OD2 REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 LYS A 68 CG CD CE NZ REMARK 470 LYS A 72 CG CD CE NZ REMARK 470 LYS A 82 CG CD CE NZ REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 ASP A 122 CG OD1 OD2 REMARK 470 GLU A 232 CG CD OE1 OE2 REMARK 470 LYS A 264 CE NZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 320 CG CD OE1 OE2 REMARK 470 GLN A 339 CG CD OE1 NE2 REMARK 470 LEU A 362 CG CD1 CD2 REMARK 470 ASN A 363 CG OD1 ND2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ASP A 366 CG OD1 OD2 REMARK 470 LEU A 367 CG CD1 CD2 REMARK 470 THR A 368 OG1 CG2 REMARK 470 GLN A 369 CG CD OE1 NE2 REMARK 470 ASP A 370 CG OD1 OD2 REMARK 470 LYS A 396 CG CD CE NZ REMARK 470 GLU A 397 CG CD OE1 OE2 REMARK 470 GLN A 398 CG CD OE1 NE2 REMARK 470 ASN A 399 CG OD1 ND2 REMARK 470 GLU A 411 CG CD OE1 OE2 REMARK 470 ARG A 416 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 418 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 84 -1.51 80.09 REMARK 500 ASP A 172 -124.27 50.84 REMARK 500 HIS A 257 101.57 -162.75 REMARK 500 ARG A 337 -101.71 -122.89 REMARK 500 LEU A 420 -61.22 -92.52 REMARK 500 REMARK 500 REMARK: NULL DBREF 6E1I A -19 9 PDB 6E1I 6E1I -19 9 DBREF 6E1I A 28 123 UNP P01887 B2MG_MOUSE 24 119 DBREF 6E1I A 144 326 UNP P01892 1A02_HUMAN 25 207 DBREF 6E1I A 327 417 UNP P01902 HA1D_MOUSE 205 295 SEQADV 6E1I GLY A 10 PDB LINKER SEQADV 6E1I GLY A 11 PDB LINKER SEQADV 6E1I GLY A 12 PDB LINKER SEQADV 6E1I GLY A 13 PDB LINKER SEQADV 6E1I SER A 14 PDB LINKER SEQADV 6E1I GLY A 15 PDB LINKER SEQADV 6E1I GLY A 16 PDB LINKER SEQADV 6E1I GLY A 17 PDB LINKER SEQADV 6E1I GLY A 18 PDB LINKER SEQADV 6E1I SER A 19 PDB LINKER SEQADV 6E1I GLY A 20 PDB LINKER SEQADV 6E1I GLY A 21 PDB LINKER SEQADV 6E1I GLY A 22 PDB LINKER SEQADV 6E1I GLY A 23 PDB LINKER SEQADV 6E1I SER A 24 PDB LINKER SEQADV 6E1I ILE A 25 PDB LINKER SEQADV 6E1I GLN A 26 PDB LINKER SEQADV 6E1I ARG A 27 PDB LINKER SEQADV 6E1I SER A 57 UNP P01887 PRO 53 CONFLICT SEQADV 6E1I ASP A 58 UNP P01887 HIS 54 CONFLICT SEQADV 6E1I LEU A 78 UNP P01887 MET 74 CONFLICT SEQADV 6E1I GLY A 124 UNP P01887 LINKER SEQADV 6E1I GLY A 125 UNP P01887 LINKER SEQADV 6E1I GLY A 126 UNP P01887 LINKER SEQADV 6E1I GLY A 127 UNP P01887 LINKER SEQADV 6E1I SER A 128 UNP P01887 LINKER SEQADV 6E1I GLY A 129 UNP P01887 LINKER SEQADV 6E1I GLY A 130 UNP P01887 LINKER SEQADV 6E1I GLY A 131 UNP P01887 LINKER SEQADV 6E1I GLY A 132 UNP P01887 LINKER SEQADV 6E1I SER A 133 UNP P01887 LINKER SEQADV 6E1I GLY A 134 UNP P01887 LINKER SEQADV 6E1I GLY A 135 UNP P01887 LINKER SEQADV 6E1I GLY A 136 UNP P01887 LINKER SEQADV 6E1I GLY A 137 UNP P01887 LINKER SEQADV 6E1I SER A 138 UNP P01887 LINKER SEQADV 6E1I GLY A 139 UNP P01887 LINKER SEQADV 6E1I GLY A 140 UNP P01887 LINKER SEQADV 6E1I GLY A 141 UNP P01887 LINKER SEQADV 6E1I GLY A 142 UNP P01887 LINKER SEQADV 6E1I SER A 143 UNP P01887 LINKER SEQADV 6E1I ALA A 227 UNP P01892 TYR 108 CONFLICT SEQADV 6E1I GLU A 407 UNP P01902 LYS 285 CONFLICT SEQADV 6E1I GLU A 418 UNP P01902 EXPRESSION TAG SEQADV 6E1I ASN A 419 UNP P01902 EXPRESSION TAG SEQADV 6E1I LEU A 420 UNP P01902 EXPRESSION TAG SEQADV 6E1I TYR A 421 UNP P01902 EXPRESSION TAG SEQADV 6E1I PHE A 422 UNP P01902 EXPRESSION TAG SEQRES 1 A 442 MET GLU THR ASP THR LEU LEU LEU TRP VAL LEU LEU LEU SEQRES 2 A 442 TRP VAL PRO GLY SER THR GLY TYR MET LEU ASP LEU GLN SEQRES 3 A 442 PRO GLU THR GLY GLY GLY GLY SER GLY GLY GLY GLY SER SEQRES 4 A 442 GLY GLY GLY GLY SER ILE GLN ARG THR PRO GLN ILE GLN SEQRES 5 A 442 VAL TYR SER ARG HIS PRO PRO GLU ASN GLY LYS PRO ASN SEQRES 6 A 442 ILE LEU ASN CYS TYR VAL THR GLN PHE HIS PRO SER ASP SEQRES 7 A 442 ILE GLU ILE GLN MET LEU LYS ASN GLY LYS LYS ILE PRO SEQRES 8 A 442 LYS VAL GLU MET SER ASP LEU SER PHE SER LYS ASP TRP SEQRES 9 A 442 SER PHE TYR ILE LEU ALA HIS THR GLU PHE THR PRO THR SEQRES 10 A 442 GLU THR ASP THR TYR ALA CYS ARG VAL LYS HIS ALA SER SEQRES 11 A 442 MET ALA GLU PRO LYS THR VAL TYR TRP ASP ARG ASP MET SEQRES 12 A 442 GLY GLY GLY GLY SER GLY GLY GLY GLY SER GLY GLY GLY SEQRES 13 A 442 GLY SER GLY GLY GLY GLY SER GLY SER HIS SER MET ARG SEQRES 14 A 442 TYR PHE PHE THR SER VAL SER ARG PRO GLY ARG GLY GLU SEQRES 15 A 442 PRO ARG PHE ILE ALA VAL GLY TYR VAL ASP ASP THR GLN SEQRES 16 A 442 PHE VAL ARG PHE ASP SER ASP ALA ALA SER GLN ARG MET SEQRES 17 A 442 GLU PRO ARG ALA PRO TRP ILE GLU GLN GLU GLY PRO GLU SEQRES 18 A 442 TYR TRP ASP GLY GLU THR ARG LYS VAL LYS ALA HIS SER SEQRES 19 A 442 GLN THR HIS ARG VAL ASP LEU GLY THR LEU ARG GLY ALA SEQRES 20 A 442 TYR ASN GLN SER GLU ALA GLY SER HIS THR VAL GLN ARG SEQRES 21 A 442 MET TYR GLY CYS ASP VAL GLY SER ASP TRP ARG PHE LEU SEQRES 22 A 442 ARG GLY TYR HIS GLN TYR ALA TYR ASP GLY LYS ASP TYR SEQRES 23 A 442 ILE ALA LEU LYS GLU ASP LEU ARG SER TRP THR ALA ALA SEQRES 24 A 442 ASP MET ALA ALA GLN THR THR LYS HIS LYS TRP GLU ALA SEQRES 25 A 442 ALA HIS VAL ALA GLU GLN LEU ARG ALA TYR LEU GLU GLY SEQRES 26 A 442 THR CYS VAL GLU TRP LEU ARG ARG TYR LEU GLU ASN GLY SEQRES 27 A 442 LYS GLU THR LEU GLN ARG THR ASP SER PRO LYS ALA HIS SEQRES 28 A 442 VAL THR TYR HIS PRO ARG SER GLN VAL ASP VAL THR LEU SEQRES 29 A 442 ARG CYS TRP ALA LEU GLY PHE TYR PRO ALA ASP ILE THR SEQRES 30 A 442 LEU THR TRP GLN LEU ASN GLY GLU ASP LEU THR GLN ASP SEQRES 31 A 442 MET GLU LEU VAL GLU THR ARG PRO ALA GLY ASP GLY THR SEQRES 32 A 442 PHE GLN LYS TRP ALA ALA VAL VAL VAL PRO LEU GLY LYS SEQRES 33 A 442 GLU GLN ASN TYR THR CYS HIS VAL HIS HIS GLU GLY LEU SEQRES 34 A 442 PRO GLU PRO LEU THR LEU ARG TRP GLU ASN LEU TYR PHE FORMUL 2 HOH *151(H2 O) HELIX 1 AA1 ALA A 192 GLU A 198 5 7 HELIX 2 AA2 GLY A 199 TYR A 228 1 30 HELIX 3 AA3 ASP A 280 HIS A 294 1 15 HELIX 4 AA4 HIS A 294 GLY A 305 1 12 HELIX 5 AA5 GLY A 305 GLY A 318 1 14 HELIX 6 AA6 GLY A 318 GLN A 323 1 6 HELIX 7 AA7 LYS A 396 GLN A 398 5 3 SHEET 1 AA1 4 GLN A 30 SER A 35 0 SHEET 2 AA1 4 ASN A 45 PHE A 54 -1 O ASN A 48 N TYR A 34 SHEET 3 AA1 4 PHE A 86 PHE A 94 -1 O ALA A 90 N CYS A 49 SHEET 4 AA1 4 GLU A 74 MET A 75 -1 N GLU A 74 O HIS A 91 SHEET 1 AA2 4 GLN A 30 SER A 35 0 SHEET 2 AA2 4 ASN A 45 PHE A 54 -1 O ASN A 48 N TYR A 34 SHEET 3 AA2 4 PHE A 86 PHE A 94 -1 O ALA A 90 N CYS A 49 SHEET 4 AA2 4 SER A 79 PHE A 80 -1 N SER A 79 O TYR A 87 SHEET 1 AA3 4 LYS A 68 LYS A 69 0 SHEET 2 AA3 4 GLU A 60 LYS A 65 -1 N LYS A 65 O LYS A 68 SHEET 3 AA3 4 TYR A 102 LYS A 107 -1 O ARG A 105 N GLN A 62 SHEET 4 AA3 4 LYS A 115 TYR A 118 -1 O VAL A 117 N CYS A 104 SHEET 1 AA4 8 GLU A 189 PRO A 190 0 SHEET 2 AA4 8 THR A 174 ASP A 180 -1 N ARG A 178 O GLU A 189 SHEET 3 AA4 8 ARG A 164 VAL A 171 -1 N GLY A 169 O PHE A 176 SHEET 4 AA4 8 HIS A 146 VAL A 155 -1 N ARG A 149 O TYR A 170 SHEET 5 AA4 8 THR A 237 VAL A 246 -1 O ARG A 240 N PHE A 152 SHEET 6 AA4 8 PHE A 252 TYR A 261 -1 O LEU A 253 N ASP A 245 SHEET 7 AA4 8 LYS A 264 LEU A 269 -1 O ILE A 267 N TYR A 259 SHEET 8 AA4 8 TRP A 276 ALA A 278 -1 O THR A 277 N ALA A 268 SHEET 1 AA5 4 LYS A 329 PRO A 336 0 SHEET 2 AA5 4 ASP A 341 PHE A 351 -1 O LEU A 349 N LYS A 329 SHEET 3 AA5 4 PHE A 384 PRO A 393 -1 O ALA A 388 N CYS A 346 SHEET 4 AA5 4 MET A 371 LEU A 373 -1 N GLU A 372 O ALA A 389 SHEET 1 AA6 4 LYS A 329 PRO A 336 0 SHEET 2 AA6 4 ASP A 341 PHE A 351 -1 O LEU A 349 N LYS A 329 SHEET 3 AA6 4 PHE A 384 PRO A 393 -1 O ALA A 388 N CYS A 346 SHEET 4 AA6 4 ARG A 377 PRO A 378 -1 N ARG A 377 O GLN A 385 SHEET 1 AA7 4 GLU A 365 ASP A 366 0 SHEET 2 AA7 4 THR A 357 LEU A 362 -1 N LEU A 362 O GLU A 365 SHEET 3 AA7 4 TYR A 400 HIS A 405 -1 O HIS A 403 N THR A 359 SHEET 4 AA7 4 LEU A 413 LEU A 415 -1 O LEU A 415 N CYS A 402 SSBOND 1 CYS A 49 CYS A 104 1555 1555 2.03 SSBOND 2 CYS A 244 CYS A 307 1555 1555 2.08 SSBOND 3 CYS A 346 CYS A 402 1555 1555 2.02 CISPEP 1 HIS A 55 PRO A 56 0 3.98 CISPEP 2 TYR A 352 PRO A 353 0 1.29 CRYST1 52.466 82.195 107.165 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019060 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012166 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009331 0.00000