data_6E1W # _entry.id 6E1W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6E1W pdb_00006e1w 10.2210/pdb6e1w/pdb WWPDB D_1000235535 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-04-10 2 'Structure model' 1 1 2019-04-17 3 'Structure model' 2 0 2019-12-04 4 'Structure model' 2 1 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 3 'Structure model' 'Polymer sequence' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' entity_poly 4 3 'Structure model' pdbx_audit_support 5 4 'Structure model' chem_comp_atom 6 4 'Structure model' chem_comp_bond 7 4 'Structure model' database_2 8 4 'Structure model' pdbx_struct_conn_angle 9 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 7 3 'Structure model' '_pdbx_audit_support.funding_organization' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.value' 13 4 'Structure model' '_struct_conn.pdbx_dist_value' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6E1W _pdbx_database_status.recvd_initial_deposition_date 2018-07-10 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Numata, T.' 1 ? 'Connelly, C.M.' 2 ? 'Schneekloth, J.S.' 3 ? ;Ferre-D'Amare, A.R. ; 4 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 1501 _citation.page_last 1501 _citation.title 'Synthetic ligands for PreQ1riboswitches provide structural and mechanistic insights into targeting RNA tertiary structure.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-019-09493-3 _citation.pdbx_database_id_PubMed 30940810 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Connelly, C.M.' 1 ? primary 'Numata, T.' 2 ? primary 'Boer, R.E.' 3 ? primary 'Moon, M.H.' 4 ? primary 'Sinniah, R.S.' 5 ? primary 'Barchi, J.J.' 6 ? primary ;Ferre-D'Amare, A.R. ; 7 ? primary 'Schneekloth Jr., J.S.' 8 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA (33-MER)' 10333.194 1 ? ? ? ? 2 non-polymer syn '2-amino-5-(aminomethyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one' 179.179 1 ? ? ? ? 3 non-polymer syn 'ACETATE ION' 59.044 2 ? ? ? ? 4 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 5 water nat water 18.015 96 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code 'CUGGGUCGCAGU(N)(N)CCCCAGUUAACAAAACAAG' _entity_poly.pdbx_seq_one_letter_code_can CUGGGUCGCAGUNNCCCCAGUUAACAAAACAAG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-amino-5-(aminomethyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one' HNG 3 'ACETATE ION' ACT 4 'MAGNESIUM ION' MG 5 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 U n 1 3 G n 1 4 G n 1 5 G n 1 6 U n 1 7 C n 1 8 G n 1 9 C n 1 10 A n 1 11 G n 1 12 U n 1 13 N n 1 14 N n 1 15 C n 1 16 C n 1 17 C n 1 18 C n 1 19 A n 1 20 G n 1 21 U n 1 22 U n 1 23 A n 1 24 A n 1 25 C n 1 26 A n 1 27 A n 1 28 A n 1 29 A n 1 30 C n 1 31 A n 1 32 A n 1 33 G n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 33 _pdbx_entity_src_syn.organism_scientific 'Caldanaerobacter subterraneus subsp. tengcongensis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 119072 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HNG non-polymer . '2-amino-5-(aminomethyl)-1,7-dihydro-4H-pyrrolo[2,3-d]pyrimidin-4-one' PreQ1 'C7 H9 N5 O' 179.179 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 N 'RNA linking' . ;ANY 5'-MONOPHOSPHATE NUCLEOTIDE ; "1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE" 'C5 H11 O7 P' 214.110 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 U 2 2 2 U U A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 G 5 5 5 G G A . n A 1 6 U 6 6 6 U U A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 C 9 9 9 C C A . n A 1 10 A 10 10 10 A A A . n A 1 11 G 11 11 11 G G A . n A 1 12 U 12 12 12 U U A . n A 1 13 N 13 13 13 N N A . n A 1 14 N 14 14 14 N N A . n A 1 15 C 15 15 15 C C A . n A 1 16 C 16 16 16 C C A . n A 1 17 C 17 17 17 C C A . n A 1 18 C 18 18 18 C C A . n A 1 19 A 19 19 19 A A A . n A 1 20 G 20 20 20 G G A . n A 1 21 U 21 21 21 U U A . n A 1 22 U 22 22 22 U U A . n A 1 23 A 23 23 23 A A A . n A 1 24 A 24 24 24 A A A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 A 28 28 28 A A A . n A 1 29 A 29 29 29 A A A . n A 1 30 C 30 30 30 C C A . n A 1 31 A 31 31 31 A A A . n A 1 32 A 32 32 32 A A A . n A 1 33 G 33 33 33 G G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HNG 1 101 1 HNG PRF A . C 3 ACT 1 102 1 ACT ACT A . D 3 ACT 1 103 2 ACT ACT A . E 4 MG 1 104 1 MG MG A . F 5 HOH 1 201 90 HOH HOH A . F 5 HOH 2 202 79 HOH HOH A . F 5 HOH 3 203 88 HOH HOH A . F 5 HOH 4 204 61 HOH HOH A . F 5 HOH 5 205 37 HOH HOH A . F 5 HOH 6 206 35 HOH HOH A . F 5 HOH 7 207 13 HOH HOH A . F 5 HOH 8 208 94 HOH HOH A . F 5 HOH 9 209 77 HOH HOH A . F 5 HOH 10 210 80 HOH HOH A . F 5 HOH 11 211 67 HOH HOH A . F 5 HOH 12 212 55 HOH HOH A . F 5 HOH 13 213 91 HOH HOH A . F 5 HOH 14 214 3 HOH HOH A . F 5 HOH 15 215 52 HOH HOH A . F 5 HOH 16 216 85 HOH HOH A . F 5 HOH 17 217 22 HOH HOH A . F 5 HOH 18 218 84 HOH HOH A . F 5 HOH 19 219 17 HOH HOH A . F 5 HOH 20 220 45 HOH HOH A . F 5 HOH 21 221 16 HOH HOH A . F 5 HOH 22 222 74 HOH HOH A . F 5 HOH 23 223 46 HOH HOH A . F 5 HOH 24 224 63 HOH HOH A . F 5 HOH 25 225 49 HOH HOH A . F 5 HOH 26 226 30 HOH HOH A . F 5 HOH 27 227 26 HOH HOH A . F 5 HOH 28 228 50 HOH HOH A . F 5 HOH 29 229 59 HOH HOH A . F 5 HOH 30 230 19 HOH HOH A . F 5 HOH 31 231 48 HOH HOH A . F 5 HOH 32 232 23 HOH HOH A . F 5 HOH 33 233 78 HOH HOH A . F 5 HOH 34 234 51 HOH HOH A . F 5 HOH 35 235 83 HOH HOH A . F 5 HOH 36 236 27 HOH HOH A . F 5 HOH 37 237 40 HOH HOH A . F 5 HOH 38 238 53 HOH HOH A . F 5 HOH 39 239 44 HOH HOH A . F 5 HOH 40 240 87 HOH HOH A . F 5 HOH 41 241 2 HOH HOH A . F 5 HOH 42 242 15 HOH HOH A . F 5 HOH 43 243 72 HOH HOH A . F 5 HOH 44 244 8 HOH HOH A . F 5 HOH 45 245 92 HOH HOH A . F 5 HOH 46 246 71 HOH HOH A . F 5 HOH 47 247 43 HOH HOH A . F 5 HOH 48 248 58 HOH HOH A . F 5 HOH 49 249 68 HOH HOH A . F 5 HOH 50 250 21 HOH HOH A . F 5 HOH 51 251 82 HOH HOH A . F 5 HOH 52 252 65 HOH HOH A . F 5 HOH 53 253 31 HOH HOH A . F 5 HOH 54 254 24 HOH HOH A . F 5 HOH 55 255 64 HOH HOH A . F 5 HOH 56 256 42 HOH HOH A . F 5 HOH 57 257 73 HOH HOH A . F 5 HOH 58 258 11 HOH HOH A . F 5 HOH 59 259 75 HOH HOH A . F 5 HOH 60 260 10 HOH HOH A . F 5 HOH 61 261 14 HOH HOH A . F 5 HOH 62 262 57 HOH HOH A . F 5 HOH 63 263 81 HOH HOH A . F 5 HOH 64 264 7 HOH HOH A . F 5 HOH 65 265 6 HOH HOH A . F 5 HOH 66 266 12 HOH HOH A . F 5 HOH 67 267 56 HOH HOH A . F 5 HOH 68 268 47 HOH HOH A . F 5 HOH 69 269 20 HOH HOH A . F 5 HOH 70 270 29 HOH HOH A . F 5 HOH 71 271 5 HOH HOH A . F 5 HOH 72 272 66 HOH HOH A . F 5 HOH 73 273 32 HOH HOH A . F 5 HOH 74 274 39 HOH HOH A . F 5 HOH 75 275 1 HOH HOH A . F 5 HOH 76 276 25 HOH HOH A . F 5 HOH 77 277 4 HOH HOH A . F 5 HOH 78 278 62 HOH HOH A . F 5 HOH 79 279 86 HOH HOH A . F 5 HOH 80 280 38 HOH HOH A . F 5 HOH 81 281 36 HOH HOH A . F 5 HOH 82 282 54 HOH HOH A . F 5 HOH 83 283 70 HOH HOH A . F 5 HOH 84 284 9 HOH HOH A . F 5 HOH 85 285 41 HOH HOH A . F 5 HOH 86 286 95 HOH HOH A . F 5 HOH 87 287 34 HOH HOH A . F 5 HOH 88 288 28 HOH HOH A . F 5 HOH 89 289 18 HOH HOH A . F 5 HOH 90 290 33 HOH HOH A . F 5 HOH 91 291 60 HOH HOH A . F 5 HOH 92 292 93 HOH HOH A . F 5 HOH 93 293 69 HOH HOH A . F 5 HOH 94 294 96 HOH HOH A . F 5 HOH 95 295 76 HOH HOH A . F 5 HOH 96 296 89 HOH HOH A . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? 0.5.32 1 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? 2.7.16 2 ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 3 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 120.000 _cell.angle_gamma_esd ? _cell.entry_id 6E1W _cell.details ? _cell.formula_units_Z ? _cell.length_a 52.297 _cell.length_a_esd ? _cell.length_b 52.297 _cell.length_b_esd ? _cell.length_c 179.215 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6E1W _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6E1W _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 3.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 62.2 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 294 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.01 M magnesium acetate, 0.05 M MES (pH 5.6), 2.7 M ammonium sulfate' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-09-12 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1.0 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_synchrotron_site ALS # _reflns.B_iso_Wilson_estimate 38.240 _reflns.entry_id 6E1W _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.690 _reflns.d_resolution_low 44.800 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 17169 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.600 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 33.200 _reflns.pdbx_Rmerge_I_obs 0.037 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 44.400 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects 1 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.037 _reflns.pdbx_Rpim_I_all 0.006 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 569211 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.690 1.720 ? ? ? ? ? ? 783 96.200 ? ? ? ? 1.411 ? ? ? ? ? ? ? ? 19.000 ? ? ? ? 1.450 0.326 ? 1 1 0.671 ? 9.100 44.800 ? ? ? ? ? ? 165 99.700 ? ? ? ? 0.025 ? ? ? ? ? ? ? ? 23.200 ? ? ? ? 0.026 0.006 ? 2 1 1.000 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max 95.990 _refine.B_iso_mean 49.1728 _refine.B_iso_min 33.210 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6E1W _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.6900 _refine.ls_d_res_low 43.9100 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 17086 _refine.ls_number_reflns_R_free 854 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.5500 _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1820 _refine.ls_R_factor_R_free 0.2101 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1805 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.330 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.1100 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.9000 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 24.8000 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.1700 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 1.6900 _refine_hist.d_res_low 43.9100 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 96 _refine_hist.number_atoms_total 793 _refine_hist.pdbx_number_residues_total 33 _refine_hist.pdbx_B_iso_mean_ligand 45.53 _refine_hist.pdbx_B_iso_mean_solvent 55.02 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 675 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 773 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.989 ? 1197 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.046 ? 157 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.012 ? 34 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 13.066 ? 379 ? f_dihedral_angle_d ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.6900 1.7959 2685 . 134 2551 97.0000 . . . 0.2701 0.0000 0.2646 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 1.7959 1.9346 2775 . 139 2636 100.0000 . . . 0.2784 0.0000 0.2514 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 1.9346 2.1293 2792 . 139 2653 100.0000 . . . 0.2555 0.0000 0.2461 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.1293 2.4373 2841 . 143 2698 100.0000 . . . 0.3180 0.0000 0.2462 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 2.4373 3.0707 2891 . 143 2748 100.0000 . . . 0.2516 0.0000 0.2369 . . . . . . 6 . . . 'X-RAY DIFFRACTION' 3.0707 43.9249 3102 . 156 2946 100.0000 . . . 0.1735 0.0000 0.1416 . . . . . . 6 . . . # _struct.entry_id 6E1W _struct.title 'Crystal structure of a class I PreQ1 riboswitch complexed with PreQ1' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6E1W _struct_keywords.text 'PreQ1 riboswitch, Synthetic compound, Complex, RNA' _struct_keywords.pdbx_keywords RNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6E1W _struct_ref.pdbx_db_accession 6E1W _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6E1W _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 33 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6E1W _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 33 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 33 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 700 ? 1 MORE -10 ? 1 'SSA (A^2)' 5420 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A U 12 "O3'" ? ? ? 1_555 A N 13 P ? ? A U 12 A N 13 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale2 covale both ? A N 13 "O3'" ? ? ? 1_555 A N 14 P ? ? A N 13 A N 14 1_555 ? ? ? ? ? ? ? 1.611 ? ? covale3 covale both ? A N 14 "O3'" ? ? ? 1_555 A C 15 P ? ? A N 14 A C 15 1_555 ? ? ? ? ? ? ? 1.615 ? ? metalc1 metalc ? ? A A 31 OP2 ? ? ? 1_555 E MG . MG ? ? A A 31 A MG 104 1_555 ? ? ? ? ? ? ? 2.173 ? ? metalc2 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 104 A HOH 274 1_555 ? ? ? ? ? ? ? 2.612 ? ? metalc3 metalc ? ? E MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 104 A HOH 277 1_555 ? ? ? ? ? ? ? 2.583 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 1 A G 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A U 2 N3 ? ? ? 1_555 A A 19 N1 ? ? A U 2 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A U 2 O4 ? ? ? 1_555 A A 19 N6 ? ? A U 2 A A 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 18 N3 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 18 O2 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 18 N4 ? ? A G 3 A C 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 17 N3 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 17 O2 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 17 N4 ? ? A G 4 A C 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 16 N3 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 16 O2 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 16 N4 ? ? A G 5 A C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 N2 ? ? ? 1_555 A A 27 N1 ? ? A G 5 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog16 hydrog ? ? A G 5 N3 ? ? ? 1_555 A A 27 N6 ? ? A G 5 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog17 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 28 N7 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog18 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 28 N6 ? ? A U 6 A A 28 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? ? hydrog19 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 11 N7 ? ? A C 7 A G 11 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog20 hydrog ? ? A C 7 O2 ? ? ? 1_555 A A 29 N6 ? ? A C 7 A A 29 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog21 hydrog ? ? A C 7 O2 ? ? ? 1_555 A C 30 N4 ? ? A C 7 A C 30 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog22 hydrog ? ? A G 8 N2 ? ? ? 1_555 A A 31 N1 ? ? A G 8 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog23 hydrog ? ? A G 8 N3 ? ? ? 1_555 A A 31 N6 ? ? A G 8 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog24 hydrog ? ? A C 9 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 9 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 9 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 9 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 10 N3 ? ? ? 1_555 A A 32 N6 ? ? A A 10 A A 32 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog28 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 15 O2 ? ? A G 11 A C 15 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog29 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 11 A C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 28 N6 ? ? A C 16 A A 28 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog33 hydrog ? ? A C 17 O2 ? ? ? 1_555 A A 26 N6 ? ? A C 17 A A 26 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A A 31 ? A A 31 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 274 ? 1_555 123.7 ? 2 OP2 ? A A 31 ? A A 31 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 277 ? 1_555 126.6 ? 3 O ? F HOH . ? A HOH 274 ? 1_555 MG ? E MG . ? A MG 104 ? 1_555 O ? F HOH . ? A HOH 277 ? 1_555 91.8 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A HNG 101 ? 9 'binding site for residue HNG A 101' AC2 Software A ACT 102 ? 4 'binding site for residue ACT A 102' AC3 Software A ACT 103 ? 5 'binding site for residue ACT A 103' AC4 Software A MG 104 ? 4 'binding site for residue MG A 104' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 G A 5 ? G A 5 . ? 1_555 ? 2 AC1 9 U A 6 ? U A 6 . ? 1_555 ? 3 AC1 9 C A 7 ? C A 7 . ? 1_555 ? 4 AC1 9 G A 11 ? G A 11 . ? 1_555 ? 5 AC1 9 C A 15 ? C A 15 . ? 1_555 ? 6 AC1 9 C A 16 ? C A 16 . ? 1_555 ? 7 AC1 9 A A 29 ? A A 29 . ? 1_555 ? 8 AC1 9 C A 30 ? C A 30 . ? 1_555 ? 9 AC1 9 ACT C . ? ACT A 102 . ? 1_555 ? 10 AC2 4 G A 11 ? G A 11 . ? 1_555 ? 11 AC2 4 HNG B . ? HNG A 101 . ? 1_555 ? 12 AC2 4 HOH F . ? HOH A 242 . ? 1_555 ? 13 AC2 4 HOH F . ? HOH A 273 . ? 1_555 ? 14 AC3 5 C A 9 ? C A 9 . ? 1_555 ? 15 AC3 5 HOH F . ? HOH A 217 . ? 12_555 ? 16 AC3 5 HOH F . ? HOH A 234 . ? 1_555 ? 17 AC3 5 HOH F . ? HOH A 277 . ? 1_555 ? 18 AC3 5 HOH F . ? HOH A 288 . ? 12_555 ? 19 AC4 4 C A 30 ? C A 30 . ? 1_555 ? 20 AC4 4 A A 31 ? A A 31 . ? 1_555 ? 21 AC4 4 HOH F . ? HOH A 274 . ? 1_555 ? 22 AC4 4 HOH F . ? HOH A 277 . ? 1_555 ? # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined 37.6668 38.2491 30.0324 0.4020 0.5163 0.3782 0.1578 0.0679 0.0296 0.8696 7.8961 4.6023 -2.0799 1.1068 0.4207 -0.1043 0.1695 -0.0550 -0.0033 0.0717 -0.5614 0.2522 0.7055 0.3837 'X-RAY DIFFRACTION' 2 ? refined 38.2530 34.8162 20.0569 0.5225 0.3926 0.4491 0.0778 0.0597 -0.0385 2.9242 9.6377 6.5778 0.8423 1.5817 2.4931 -0.0044 -0.0113 -0.0348 0.1079 0.9372 -0.6283 -0.3537 -0.0844 0.3245 'X-RAY DIFFRACTION' 3 ? refined 32.1170 45.0929 36.3141 0.3583 0.5416 0.3852 0.0858 0.0474 -0.0270 8.3478 2.2386 2.5224 3.5122 2.9978 0.7650 -0.0254 -0.2430 0.2448 -0.3598 -0.0336 0.1811 0.2219 0.3594 0.0125 'X-RAY DIFFRACTION' 4 ? refined 34.3148 30.6623 26.7568 0.5622 0.3584 0.3933 0.0631 0.0458 0.0080 3.6764 8.3403 4.4818 -2.1123 -1.8575 6.0935 -0.1627 -0.1665 0.4239 -0.0950 -0.2124 0.5348 0.6937 1.3995 -0.0957 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 8 '(chain A and resid 1:8)' ? ? ? ? ? 'X-RAY DIFFRACTION' 2 2 A 9 A 16 '(chain A and resid 9:16)' ? ? ? ? ? 'X-RAY DIFFRACTION' 3 3 A 17 A 23 '(chain A and resid 17:23)' ? ? ? ? ? 'X-RAY DIFFRACTION' 4 4 A 24 A 33 '(chain A and resid 24:33)' ? ? ? ? ? # _pdbx_phasing_MR.entry_id 6E1W _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details ? _pdbx_phasing_MR.R_factor ? _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 5.090 _pdbx_phasing_MR.d_res_low_rotation 43.910 _pdbx_phasing_MR.d_res_high_translation 5.090 _pdbx_phasing_MR.d_res_low_translation 43.910 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ACT C C N N 38 ACT O O N N 39 ACT OXT O N N 40 ACT CH3 C N N 41 ACT H1 H N N 42 ACT H2 H N N 43 ACT H3 H N N 44 C OP3 O N N 45 C P P N N 46 C OP1 O N N 47 C OP2 O N N 48 C "O5'" O N N 49 C "C5'" C N N 50 C "C4'" C N R 51 C "O4'" O N N 52 C "C3'" C N S 53 C "O3'" O N N 54 C "C2'" C N R 55 C "O2'" O N N 56 C "C1'" C N R 57 C N1 N N N 58 C C2 C N N 59 C O2 O N N 60 C N3 N N N 61 C C4 C N N 62 C N4 N N N 63 C C5 C N N 64 C C6 C N N 65 C HOP3 H N N 66 C HOP2 H N N 67 C "H5'" H N N 68 C "H5''" H N N 69 C "H4'" H N N 70 C "H3'" H N N 71 C "HO3'" H N N 72 C "H2'" H N N 73 C "HO2'" H N N 74 C "H1'" H N N 75 C H41 H N N 76 C H42 H N N 77 C H5 H N N 78 C H6 H N N 79 G OP3 O N N 80 G P P N N 81 G OP1 O N N 82 G OP2 O N N 83 G "O5'" O N N 84 G "C5'" C N N 85 G "C4'" C N R 86 G "O4'" O N N 87 G "C3'" C N S 88 G "O3'" O N N 89 G "C2'" C N R 90 G "O2'" O N N 91 G "C1'" C N R 92 G N9 N Y N 93 G C8 C Y N 94 G N7 N Y N 95 G C5 C Y N 96 G C6 C N N 97 G O6 O N N 98 G N1 N N N 99 G C2 C N N 100 G N2 N N N 101 G N3 N N N 102 G C4 C Y N 103 G HOP3 H N N 104 G HOP2 H N N 105 G "H5'" H N N 106 G "H5''" H N N 107 G "H4'" H N N 108 G "H3'" H N N 109 G "HO3'" H N N 110 G "H2'" H N N 111 G "HO2'" H N N 112 G "H1'" H N N 113 G H8 H N N 114 G H1 H N N 115 G H21 H N N 116 G H22 H N N 117 HNG N1 N N N 118 HNG C2 C N N 119 HNG N3 N N N 120 HNG C4 C Y N 121 HNG C5 C Y N 122 HNG C6 C N N 123 HNG O6 O N N 124 HNG C7 C Y N 125 HNG C10 C N N 126 HNG N11 N N N 127 HNG C8 C Y N 128 HNG N9 N Y N 129 HNG N2 N N N 130 HNG H1 H N N 131 HNG H2 H N N 132 HNG H3 H N N 133 HNG H4 H N N 134 HNG H5 H N N 135 HNG H7 H N N 136 HNG H8 H N N 137 HNG H9 H N N 138 HNG H10 H N N 139 HOH O O N N 140 HOH H1 H N N 141 HOH H2 H N N 142 MG MG MG N N 143 U OP3 O N N 144 U P P N N 145 U OP1 O N N 146 U OP2 O N N 147 U "O5'" O N N 148 U "C5'" C N N 149 U "C4'" C N R 150 U "O4'" O N N 151 U "C3'" C N S 152 U "O3'" O N N 153 U "C2'" C N R 154 U "O2'" O N N 155 U "C1'" C N R 156 U N1 N N N 157 U C2 C N N 158 U O2 O N N 159 U N3 N N N 160 U C4 C N N 161 U O4 O N N 162 U C5 C N N 163 U C6 C N N 164 U HOP3 H N N 165 U HOP2 H N N 166 U "H5'" H N N 167 U "H5''" H N N 168 U "H4'" H N N 169 U "H3'" H N N 170 U "HO3'" H N N 171 U "H2'" H N N 172 U "HO2'" H N N 173 U "H1'" H N N 174 U H3 H N N 175 U H5 H N N 176 U H6 H N N 177 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ACT C O doub N N 40 ACT C OXT sing N N 41 ACT C CH3 sing N N 42 ACT CH3 H1 sing N N 43 ACT CH3 H2 sing N N 44 ACT CH3 H3 sing N N 45 C OP3 P sing N N 46 C OP3 HOP3 sing N N 47 C P OP1 doub N N 48 C P OP2 sing N N 49 C P "O5'" sing N N 50 C OP2 HOP2 sing N N 51 C "O5'" "C5'" sing N N 52 C "C5'" "C4'" sing N N 53 C "C5'" "H5'" sing N N 54 C "C5'" "H5''" sing N N 55 C "C4'" "O4'" sing N N 56 C "C4'" "C3'" sing N N 57 C "C4'" "H4'" sing N N 58 C "O4'" "C1'" sing N N 59 C "C3'" "O3'" sing N N 60 C "C3'" "C2'" sing N N 61 C "C3'" "H3'" sing N N 62 C "O3'" "HO3'" sing N N 63 C "C2'" "O2'" sing N N 64 C "C2'" "C1'" sing N N 65 C "C2'" "H2'" sing N N 66 C "O2'" "HO2'" sing N N 67 C "C1'" N1 sing N N 68 C "C1'" "H1'" sing N N 69 C N1 C2 sing N N 70 C N1 C6 sing N N 71 C C2 O2 doub N N 72 C C2 N3 sing N N 73 C N3 C4 doub N N 74 C C4 N4 sing N N 75 C C4 C5 sing N N 76 C N4 H41 sing N N 77 C N4 H42 sing N N 78 C C5 C6 doub N N 79 C C5 H5 sing N N 80 C C6 H6 sing N N 81 G OP3 P sing N N 82 G OP3 HOP3 sing N N 83 G P OP1 doub N N 84 G P OP2 sing N N 85 G P "O5'" sing N N 86 G OP2 HOP2 sing N N 87 G "O5'" "C5'" sing N N 88 G "C5'" "C4'" sing N N 89 G "C5'" "H5'" sing N N 90 G "C5'" "H5''" sing N N 91 G "C4'" "O4'" sing N N 92 G "C4'" "C3'" sing N N 93 G "C4'" "H4'" sing N N 94 G "O4'" "C1'" sing N N 95 G "C3'" "O3'" sing N N 96 G "C3'" "C2'" sing N N 97 G "C3'" "H3'" sing N N 98 G "O3'" "HO3'" sing N N 99 G "C2'" "O2'" sing N N 100 G "C2'" "C1'" sing N N 101 G "C2'" "H2'" sing N N 102 G "O2'" "HO2'" sing N N 103 G "C1'" N9 sing N N 104 G "C1'" "H1'" sing N N 105 G N9 C8 sing Y N 106 G N9 C4 sing Y N 107 G C8 N7 doub Y N 108 G C8 H8 sing N N 109 G N7 C5 sing Y N 110 G C5 C6 sing N N 111 G C5 C4 doub Y N 112 G C6 O6 doub N N 113 G C6 N1 sing N N 114 G N1 C2 sing N N 115 G N1 H1 sing N N 116 G C2 N2 sing N N 117 G C2 N3 doub N N 118 G N2 H21 sing N N 119 G N2 H22 sing N N 120 G N3 C4 sing N N 121 HNG N2 C2 sing N N 122 HNG N1 C2 doub N N 123 HNG N1 C6 sing N N 124 HNG O6 C6 doub N N 125 HNG C2 N3 sing N N 126 HNG C6 C5 sing N N 127 HNG N3 C4 sing N N 128 HNG C5 C4 doub Y N 129 HNG C5 C7 sing Y N 130 HNG C4 N9 sing Y N 131 HNG N11 C10 sing N N 132 HNG C7 C10 sing N N 133 HNG C7 C8 doub Y N 134 HNG N9 C8 sing Y N 135 HNG N3 H1 sing N N 136 HNG C10 H2 sing N N 137 HNG C10 H3 sing N N 138 HNG N11 H4 sing N N 139 HNG N11 H5 sing N N 140 HNG C8 H7 sing N N 141 HNG N9 H8 sing N N 142 HNG N2 H9 sing N N 143 HNG N2 H10 sing N N 144 HOH O H1 sing N N 145 HOH O H2 sing N N 146 U OP3 P sing N N 147 U OP3 HOP3 sing N N 148 U P OP1 doub N N 149 U P OP2 sing N N 150 U P "O5'" sing N N 151 U OP2 HOP2 sing N N 152 U "O5'" "C5'" sing N N 153 U "C5'" "C4'" sing N N 154 U "C5'" "H5'" sing N N 155 U "C5'" "H5''" sing N N 156 U "C4'" "O4'" sing N N 157 U "C4'" "C3'" sing N N 158 U "C4'" "H4'" sing N N 159 U "O4'" "C1'" sing N N 160 U "C3'" "O3'" sing N N 161 U "C3'" "C2'" sing N N 162 U "C3'" "H3'" sing N N 163 U "O3'" "HO3'" sing N N 164 U "C2'" "O2'" sing N N 165 U "C2'" "C1'" sing N N 166 U "C2'" "H2'" sing N N 167 U "O2'" "HO2'" sing N N 168 U "C1'" N1 sing N N 169 U "C1'" "H1'" sing N N 170 U N1 C2 sing N N 171 U N1 C6 sing N N 172 U C2 O2 doub N N 173 U C2 N3 sing N N 174 U N3 C4 sing N N 175 U N3 H3 sing N N 176 U C4 O4 doub N N 177 U C4 C5 sing N N 178 U C5 C6 doub N N 179 U C5 H5 sing N N 180 U C6 H6 sing N N 181 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6E1W 'double helix' 6E1W 'a-form double helix' 6E1W 'quadruple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 A G 20 1_555 0.153 -0.144 0.090 -4.408 -7.984 0.221 1 A_C1:G20_A A 1 ? A 20 ? 19 1 1 A U 2 1_555 A A 19 1_555 0.072 -0.134 0.191 -3.887 -13.022 2.244 2 A_U2:A19_A A 2 ? A 19 ? 20 1 1 A G 3 1_555 A C 18 1_555 -0.204 -0.141 -0.070 -6.692 -10.155 -0.482 3 A_G3:C18_A A 3 ? A 18 ? 19 1 1 A G 4 1_555 A C 17 1_555 -0.215 -0.239 0.030 -5.787 -10.632 -1.128 4 A_G4:C17_A A 4 ? A 17 ? 19 1 1 A G 5 1_555 A C 16 1_555 -0.200 -0.165 0.090 -2.291 -11.111 -0.656 5 A_G5:C16_A A 5 ? A 16 ? 19 1 1 A U 6 1_555 A A 28 1_555 -0.644 3.355 1.401 -27.955 -13.537 -70.055 6 A_U6:A28_A A 6 ? A 28 ? 23 3 1 A C 7 1_555 A A 29 1_555 4.445 0.083 2.102 -24.064 16.579 -42.354 7 A_C7:A29_A A 7 ? A 29 ? ? ? 1 A G 11 1_555 A C 30 1_555 -0.253 -0.161 0.247 -0.456 -23.592 0.536 8 A_G11:C30_A A 11 ? A 30 ? 19 1 1 A G 8 1_555 A A 31 1_555 3.688 -3.704 0.323 12.327 -3.272 -61.197 9 A_G8:A31_A A 8 ? A 31 ? 10 6 1 A A 10 1_555 A A 32 1_555 6.312 -4.188 -0.389 5.109 -23.439 -21.012 10 A_A10:A32_A A 10 ? A 32 ? ? 10 1 A C 9 1_555 A G 33 1_555 0.368 -0.151 -0.200 8.891 -14.816 -0.819 11 A_C9:G33_A A 9 ? A 33 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 A G 20 1_555 A U 2 1_555 A A 19 1_555 0.337 -1.439 3.192 0.493 7.777 34.625 -3.423 -0.486 2.817 12.865 -0.815 35.465 1 AA_C1U2:A19G20_AA A 1 ? A 20 ? A 2 ? A 19 ? 1 A U 2 1_555 A A 19 1_555 A G 3 1_555 A C 18 1_555 -0.126 -1.384 3.175 2.954 10.697 32.281 -3.899 0.640 2.578 18.567 -5.127 34.087 2 AA_U2G3:C18A19_AA A 2 ? A 19 ? A 3 ? A 18 ? 1 A G 3 1_555 A C 18 1_555 A G 4 1_555 A C 17 1_555 0.517 -1.670 3.230 1.768 5.180 29.294 -4.275 -0.656 2.924 10.131 -3.457 29.790 3 AA_G3G4:C17C18_AA A 3 ? A 18 ? A 4 ? A 17 ? 1 A G 4 1_555 A C 17 1_555 A G 5 1_555 A C 16 1_555 0.304 -1.792 3.133 2.901 4.708 34.469 -3.648 -0.100 2.886 7.881 -4.857 34.897 4 AA_G4G5:C16C17_AA A 4 ? A 17 ? A 5 ? A 16 ? 1 A G 5 1_555 A C 16 1_555 A U 6 1_555 A A 28 1_555 -6.527 -1.001 1.512 15.424 6.981 20.387 -1.755 13.312 -2.859 16.519 -36.500 26.443 5 AA_G5U6:A28C16_AA A 5 ? A 16 ? A 6 ? A 28 ? 1 A U 6 1_555 A A 28 1_555 A C 7 1_555 A A 29 1_555 2.805 -1.538 3.672 3.571 -0.277 49.832 -1.798 -3.023 3.859 -0.328 -4.232 49.953 6 AA_U6C7:A29A28_AA A 6 ? A 28 ? A 7 ? A 29 ? 1 A C 7 1_555 A A 29 1_555 A G 11 1_555 A C 30 1_555 0.908 -1.916 0.503 -146.356 -96.505 127.866 -0.889 -0.559 0.582 -48.384 73.377 177.939 7 AA_C7G11:C30A29_AA A 7 ? A 29 ? A 11 ? A 30 ? 1 A G 11 1_555 A C 30 1_555 A G 8 1_555 A A 31 1_555 -3.585 2.578 1.457 -160.550 -18.119 -157.448 -1.277 -1.902 0.798 9.079 -80.449 -176.411 8 AA_G11G8:A31C30_AA A 11 ? A 30 ? A 8 ? A 31 ? 1 A G 8 1_555 A A 31 1_555 A A 10 1_555 A A 32 1_555 -4.055 2.456 -4.978 157.360 49.497 53.057 2.169 -0.921 -5.035 25.992 -82.634 166.552 9 AA_G8A10:A32A31_AA A 8 ? A 31 ? A 10 ? A 32 ? 1 A A 10 1_555 A A 32 1_555 A C 9 1_555 A G 33 1_555 1.139 0.882 -3.726 -2.066 -6.150 -63.619 -1.132 1.177 -3.601 5.818 -1.955 -63.915 10 AA_A10C9:G33A32_AA A 10 ? A 32 ? A 9 ? A 33 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)' 'United States' ? 1 'National Institutes of Health/National Cancer Institute (NIH/NCI)' 'United States' ? 2 'Japan Society for the Promotion of Science (JSPS)' Japan ? 3 # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id HNG _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id HNG _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # _atom_sites.entry_id 6E1W _atom_sites.fract_transf_matrix[1][1] 0.019122 _atom_sites.fract_transf_matrix[1][2] 0.011040 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022080 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005580 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_