HEADER GENE REGULATION/INHIBITOR 10-JUL-18 6E22 TITLE DISPLACEMENT OF WDR5 FROM CHROMATIN BY A PHARMACOLOGICAL WIN SITE TITLE 2 INHIBITOR WITH PICOMOLAR AFFINITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: WD REPEAT-CONTAINING PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BMP2-INDUCED 3-KB GENE PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WDR5, BIG3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS WDR5, WIN-SITE, FRAGMENT SCREENING, STRUCTURE-BASED DESIGN, MIXED- KEYWDS 2 LINEAGE LEUKEMIA, DNA BINDING PROTEIN, DNA BINDING PROTEIN-INHIBITOR KEYWDS 3 COMPLEX, GENE REGULATION, GENE REGULATION-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.PHAN,S.W.FESIK REVDAT 4 11-OCT-23 6E22 1 REMARK REVDAT 3 18-DEC-19 6E22 1 REMARK REVDAT 2 20-MAR-19 6E22 1 JRNL REVDAT 1 13-MAR-19 6E22 0 JRNL AUTH E.R.AHO,J.WANG,R.D.GOGLIOTTI,G.C.HOWARD,J.PHAN,P.ACHARYA, JRNL AUTH 2 J.D.MACDONALD,K.CHENG,S.L.LOREY,B.LU,S.WENZEL,A.M.FOSHAGE, JRNL AUTH 3 J.ALVARADO,F.WANG,J.G.SHAW,B.ZHAO,A.M.WEISSMILLER, JRNL AUTH 4 L.R.THOMAS,C.R.VAKOC,M.D.HALL,S.W.HIEBERT,Q.LIU, JRNL AUTH 5 S.R.STAUFFER,S.W.FESIK,W.P.TANSEY JRNL TITL DISPLACEMENT OF WDR5 FROM CHROMATIN BY A WIN SITE INHIBITOR JRNL TITL 2 WITH PICOMOLAR AFFINITY. JRNL REF CELL REP V. 26 2916 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30865883 JRNL DOI 10.1016/J.CELREP.2019.02.047 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3139: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.980 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 72970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.740 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.6172 - 3.8437 0.92 4880 138 0.1424 0.1411 REMARK 3 2 3.8437 - 3.0510 0.96 5113 144 0.1380 0.1470 REMARK 3 3 3.0510 - 2.6654 0.95 5070 143 0.1591 0.1611 REMARK 3 4 2.6654 - 2.4217 0.96 5104 144 0.1632 0.2004 REMARK 3 5 2.4217 - 2.2482 0.97 5173 145 0.1628 0.2037 REMARK 3 6 2.2482 - 2.1156 0.97 5152 145 0.1514 0.1747 REMARK 3 7 2.1156 - 2.0097 0.96 5124 145 0.1548 0.1895 REMARK 3 8 2.0097 - 1.9222 0.96 5129 144 0.1641 0.1991 REMARK 3 9 1.9222 - 1.8482 0.96 5129 145 0.1672 0.1944 REMARK 3 10 1.8482 - 1.7844 0.96 5103 143 0.1705 0.2261 REMARK 3 11 1.7844 - 1.7286 0.96 5081 144 0.1800 0.2365 REMARK 3 12 1.7286 - 1.6792 0.95 5064 143 0.1889 0.2374 REMARK 3 13 1.6792 - 1.6350 0.95 5074 143 0.2103 0.2313 REMARK 3 14 1.6350 - 1.5951 0.89 4774 134 0.2277 0.2605 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4902 REMARK 3 ANGLE : 0.881 6655 REMARK 3 CHIRALITY : 0.061 740 REMARK 3 PLANARITY : 0.006 823 REMARK 3 DIHEDRAL : 12.568 2905 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.9810 -1.7413 -6.0904 REMARK 3 T TENSOR REMARK 3 T11: 0.1003 T22: 0.0846 REMARK 3 T33: 0.1093 T12: -0.0110 REMARK 3 T13: -0.0185 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.3492 L22: 0.0896 REMARK 3 L33: 0.1377 L12: -0.0815 REMARK 3 L13: 0.2184 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: 0.0136 S13: 0.0094 REMARK 3 S21: -0.1098 S22: 0.0046 S23: 0.1220 REMARK 3 S31: -0.0034 S32: -0.0008 S33: -0.0064 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3935 -12.9428 -2.5558 REMARK 3 T TENSOR REMARK 3 T11: 0.0783 T22: 0.0618 REMARK 3 T33: 0.0760 T12: -0.0004 REMARK 3 T13: 0.0018 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.3897 L22: 0.2157 REMARK 3 L33: 0.0444 L12: -0.0265 REMARK 3 L13: -0.0451 L23: 0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.0208 S12: 0.0137 S13: -0.0727 REMARK 3 S21: -0.0357 S22: 0.0012 S23: 0.0110 REMARK 3 S31: 0.0587 S32: -0.0056 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5720 1.3003 3.7321 REMARK 3 T TENSOR REMARK 3 T11: 0.0682 T22: 0.0877 REMARK 3 T33: 0.0907 T12: 0.0096 REMARK 3 T13: 0.0114 T23: 0.0060 REMARK 3 L TENSOR REMARK 3 L11: 0.1295 L22: 0.1765 REMARK 3 L33: 0.1373 L12: 0.0646 REMARK 3 L13: 0.0769 L23: 0.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0157 S12: 0.0218 S13: 0.0409 REMARK 3 S21: 0.0019 S22: 0.0222 S23: -0.0664 REMARK 3 S31: -0.0046 S32: 0.0457 S33: -0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 213 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5476 10.4276 1.6402 REMARK 3 T TENSOR REMARK 3 T11: 0.0950 T22: 0.0829 REMARK 3 T33: 0.1031 T12: 0.0001 REMARK 3 T13: -0.0132 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3541 L22: 0.5245 REMARK 3 L33: 0.1458 L12: -0.0612 REMARK 3 L13: 0.1733 L23: 0.0562 REMARK 3 S TENSOR REMARK 3 S11: -0.0547 S12: -0.0366 S13: 0.1056 REMARK 3 S21: -0.0586 S22: 0.0331 S23: 0.0253 REMARK 3 S31: -0.0570 S32: -0.0478 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2949 -19.3773 34.8135 REMARK 3 T TENSOR REMARK 3 T11: 0.1029 T22: 0.1020 REMARK 3 T33: 0.1164 T12: -0.0029 REMARK 3 T13: 0.0192 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 0.2158 L22: 0.1294 REMARK 3 L33: 0.1210 L12: 0.0310 REMARK 3 L13: -0.1625 L23: -0.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: 0.0062 S13: 0.0042 REMARK 3 S21: 0.0823 S22: -0.0055 S23: 0.1178 REMARK 3 S31: 0.0144 S32: -0.0191 S33: -0.0028 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 178 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.1633 -11.1144 29.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.0765 T22: 0.0762 REMARK 3 T33: 0.0691 T12: -0.0068 REMARK 3 T13: -0.0013 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.5317 L22: 0.3467 REMARK 3 L33: 0.2343 L12: 0.2147 REMARK 3 L13: -0.0292 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: -0.0093 S13: 0.0630 REMARK 3 S21: 0.0366 S22: -0.0162 S23: -0.0073 REMARK 3 S31: -0.0462 S32: 0.0456 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 179 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.8856 -28.5674 25.1083 REMARK 3 T TENSOR REMARK 3 T11: 0.0949 T22: 0.1352 REMARK 3 T33: 0.1502 T12: 0.0042 REMARK 3 T13: -0.0122 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.2562 L22: 0.1176 REMARK 3 L33: 0.0386 L12: 0.1275 REMARK 3 L13: -0.0761 L23: -0.0068 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.0067 S13: -0.1544 REMARK 3 S21: -0.0073 S22: -0.0555 S23: -0.2094 REMARK 3 S31: 0.0386 S32: 0.0425 S33: -0.0001 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 233 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1903 -30.5778 28.1481 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: 0.0885 REMARK 3 T33: 0.1020 T12: -0.0040 REMARK 3 T13: -0.0009 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 0.3384 L22: 0.3709 REMARK 3 L33: 0.1453 L12: 0.0264 REMARK 3 L13: -0.1621 L23: 0.1465 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0420 S13: -0.0734 REMARK 3 S21: 0.0588 S22: 0.0265 S23: 0.0543 REMARK 3 S31: 0.0461 S32: -0.0135 S33: 0.0001 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E22 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235591. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72982 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.40200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 6D9X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 6.0 OR HEPES PH 7.5, REMARK 280 0.2 M AMMONIUM ACETATE, 28% TO 32% PEG3350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 GLN A 4 REMARK 465 SER A 5 REMARK 465 LYS A 6 REMARK 465 PRO A 7 REMARK 465 THR A 8 REMARK 465 PRO A 9 REMARK 465 SER B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 GLN B 4 REMARK 465 SER B 5 REMARK 465 LYS B 6 REMARK 465 PRO B 7 REMARK 465 THR B 8 REMARK 465 PRO B 9 REMARK 465 ILE B 189 REMARK 465 ASP B 190 REMARK 465 ASP B 191 REMARK 465 ASP B 192 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 711 O HOH A 764 1.90 REMARK 500 O HOH B 507 O HOH B 810 2.00 REMARK 500 O LEU B 188 O HOH B 501 2.05 REMARK 500 O HOH B 806 O HOH B 907 2.06 REMARK 500 O HOH A 879 O HOH A 914 2.07 REMARK 500 O HOH B 820 O HOH B 883 2.07 REMARK 500 O HOH A 501 O HOH A 902 2.08 REMARK 500 O HOH A 502 O HOH A 851 2.08 REMARK 500 O HOH B 805 O HOH B 815 2.08 REMARK 500 O HOH A 853 O HOH A 893 2.09 REMARK 500 O HOH A 729 O HOH A 795 2.11 REMARK 500 N VAL A 10 O HOH A 501 2.13 REMARK 500 O HOH B 510 O HOH B 690 2.13 REMARK 500 O HOH A 603 O HOH A 821 2.15 REMARK 500 O HOH B 765 O HOH B 844 2.15 REMARK 500 O HOH A 825 O HOH A 849 2.16 REMARK 500 O HOH B 502 O HOH B 723 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 727 O HOH B 738 1655 1.87 REMARK 500 O HOH A 899 O HOH A 970 1655 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 193 136.11 -172.36 REMARK 500 LYS A 238 -37.92 -135.45 REMARK 500 LEU B 213 45.55 -78.31 REMARK 500 ASN B 236 90.18 -160.68 REMARK 500 LYS B 238 -38.81 -130.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HLS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HLS B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6D9X RELATED DB: PDB DBREF 6E22 A 1 313 UNP P61964 WDR5_HUMAN 22 334 DBREF 6E22 B 1 313 UNP P61964 WDR5_HUMAN 22 334 SEQRES 1 A 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 A 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 A 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 A 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 A 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 A 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 A 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 A 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 A 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 A 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 A 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 A 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 A 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 A 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 A 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 A 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 A 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 A 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 A 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 A 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 A 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 A 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 A 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 A 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 A 313 CYS SEQRES 1 B 313 SER ALA THR GLN SER LYS PRO THR PRO VAL LYS PRO ASN SEQRES 2 B 313 TYR ALA LEU LYS PHE THR LEU ALA GLY HIS THR LYS ALA SEQRES 3 B 313 VAL SER SER VAL LYS PHE SER PRO ASN GLY GLU TRP LEU SEQRES 4 B 313 ALA SER SER SER ALA ASP LYS LEU ILE LYS ILE TRP GLY SEQRES 5 B 313 ALA TYR ASP GLY LYS PHE GLU LYS THR ILE SER GLY HIS SEQRES 6 B 313 LYS LEU GLY ILE SER ASP VAL ALA TRP SER SER ASP SER SEQRES 7 B 313 ASN LEU LEU VAL SER ALA SER ASP ASP LYS THR LEU LYS SEQRES 8 B 313 ILE TRP ASP VAL SER SER GLY LYS CYS LEU LYS THR LEU SEQRES 9 B 313 LYS GLY HIS SER ASN TYR VAL PHE CYS CYS ASN PHE ASN SEQRES 10 B 313 PRO GLN SER ASN LEU ILE VAL SER GLY SER PHE ASP GLU SEQRES 11 B 313 SER VAL ARG ILE TRP ASP VAL LYS THR GLY LYS CYS LEU SEQRES 12 B 313 LYS THR LEU PRO ALA HIS SER ASP PRO VAL SER ALA VAL SEQRES 13 B 313 HIS PHE ASN ARG ASP GLY SER LEU ILE VAL SER SER SER SEQRES 14 B 313 TYR ASP GLY LEU CYS ARG ILE TRP ASP THR ALA SER GLY SEQRES 15 B 313 GLN CYS LEU LYS THR LEU ILE ASP ASP ASP ASN PRO PRO SEQRES 16 B 313 VAL SER PHE VAL LYS PHE SER PRO ASN GLY LYS TYR ILE SEQRES 17 B 313 LEU ALA ALA THR LEU ASP ASN THR LEU LYS LEU TRP ASP SEQRES 18 B 313 TYR SER LYS GLY LYS CYS LEU LYS THR TYR THR GLY HIS SEQRES 19 B 313 LYS ASN GLU LYS TYR CYS ILE PHE ALA ASN PHE SER VAL SEQRES 20 B 313 THR GLY GLY LYS TRP ILE VAL SER GLY SER GLU ASP ASN SEQRES 21 B 313 LEU VAL TYR ILE TRP ASN LEU GLN THR LYS GLU ILE VAL SEQRES 22 B 313 GLN LYS LEU GLN GLY HIS THR ASP VAL VAL ILE SER THR SEQRES 23 B 313 ALA CYS HIS PRO THR GLU ASN ILE ILE ALA SER ALA ALA SEQRES 24 B 313 LEU GLU ASN ASP LYS THR ILE LYS LEU TRP LYS SER ASP SEQRES 25 B 313 CYS HET HLS A 401 28 HET SO4 A 402 5 HET HLS B 401 28 HET SO4 B 402 5 HETNAM HLS 3-{[(4,5-DIHYDRO-1H-IMIDAZOL-2-YL)AMINO]METHYL}-N-[(3, HETNAM 2 HLS 5-DIMETHOXYPHENYL)METHYL]-4-FLUOROBENZAMIDE HETNAM SO4 SULFATE ION FORMUL 3 HLS 2(C20 H23 F N4 O3) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *887(H2 O) SHEET 1 AA1 4 ALA A 15 LEU A 20 0 SHEET 2 AA1 4 ILE A 306 LYS A 310 -1 O ILE A 306 N LEU A 20 SHEET 3 AA1 4 ILE A 294 ALA A 299 -1 N ILE A 295 O TRP A 309 SHEET 4 AA1 4 VAL A 283 CYS A 288 -1 N ALA A 287 O ALA A 296 SHEET 1 AA2 4 VAL A 27 PHE A 32 0 SHEET 2 AA2 4 TRP A 38 SER A 43 -1 O SER A 42 N SER A 28 SHEET 3 AA2 4 ILE A 48 GLY A 52 -1 O TRP A 51 N LEU A 39 SHEET 4 AA2 4 PHE A 58 ILE A 62 -1 O ILE A 62 N ILE A 48 SHEET 1 AA3 4 ILE A 69 TRP A 74 0 SHEET 2 AA3 4 LEU A 80 SER A 85 -1 O ALA A 84 N SER A 70 SHEET 3 AA3 4 THR A 89 ASP A 94 -1 O TRP A 93 N LEU A 81 SHEET 4 AA3 4 CYS A 100 LYS A 105 -1 O LEU A 104 N LEU A 90 SHEET 1 AA4 4 VAL A 111 PHE A 116 0 SHEET 2 AA4 4 LEU A 122 SER A 127 -1 O VAL A 124 N ASN A 115 SHEET 3 AA4 4 VAL A 132 ASP A 136 -1 O TRP A 135 N ILE A 123 SHEET 4 AA4 4 CYS A 142 LEU A 146 -1 O LEU A 146 N VAL A 132 SHEET 1 AA5 4 VAL A 153 PHE A 158 0 SHEET 2 AA5 4 LEU A 164 SER A 169 -1 O VAL A 166 N HIS A 157 SHEET 3 AA5 4 LEU A 173 ASP A 178 -1 O TRP A 177 N ILE A 165 SHEET 4 AA5 4 CYS A 184 ASP A 190 -1 O LEU A 185 N ILE A 176 SHEET 1 AA6 4 VAL A 196 PHE A 201 0 SHEET 2 AA6 4 TYR A 207 THR A 212 -1 O LEU A 209 N LYS A 200 SHEET 3 AA6 4 THR A 216 ASP A 221 -1 O TRP A 220 N ILE A 208 SHEET 4 AA6 4 LYS A 226 TYR A 231 -1 O LYS A 226 N ASP A 221 SHEET 1 AA7 4 ALA A 243 SER A 246 0 SHEET 2 AA7 4 TRP A 252 SER A 255 -1 O VAL A 254 N ASN A 244 SHEET 3 AA7 4 VAL A 262 ASN A 266 -1 O TYR A 263 N SER A 255 SHEET 4 AA7 4 ILE A 272 LEU A 276 -1 O VAL A 273 N ILE A 264 SHEET 1 AA8 4 ALA B 15 LEU B 20 0 SHEET 2 AA8 4 ILE B 306 LYS B 310 -1 O ILE B 306 N LEU B 20 SHEET 3 AA8 4 ILE B 294 ALA B 299 -1 N ILE B 295 O TRP B 309 SHEET 4 AA8 4 VAL B 283 CYS B 288 -1 N ALA B 287 O ALA B 296 SHEET 1 AA9 4 VAL B 27 PHE B 32 0 SHEET 2 AA9 4 TRP B 38 SER B 43 -1 O ALA B 40 N LYS B 31 SHEET 3 AA9 4 LEU B 47 GLY B 52 -1 O TRP B 51 N LEU B 39 SHEET 4 AA9 4 PHE B 58 SER B 63 -1 O ILE B 62 N ILE B 48 SHEET 1 AB1 4 ILE B 69 TRP B 74 0 SHEET 2 AB1 4 LEU B 80 SER B 85 -1 O ALA B 84 N SER B 70 SHEET 3 AB1 4 THR B 89 ASP B 94 -1 O TRP B 93 N LEU B 81 SHEET 4 AB1 4 CYS B 100 LYS B 105 -1 O LEU B 104 N LEU B 90 SHEET 1 AB2 4 VAL B 111 PHE B 116 0 SHEET 2 AB2 4 LEU B 122 SER B 127 -1 O VAL B 124 N ASN B 115 SHEET 3 AB2 4 VAL B 132 ASP B 136 -1 O TRP B 135 N ILE B 123 SHEET 4 AB2 4 CYS B 142 LEU B 146 -1 O LEU B 146 N VAL B 132 SHEET 1 AB3 4 VAL B 153 PHE B 158 0 SHEET 2 AB3 4 LEU B 164 SER B 169 -1 O VAL B 166 N HIS B 157 SHEET 3 AB3 4 CYS B 174 ASP B 178 -1 O TRP B 177 N ILE B 165 SHEET 4 AB3 4 CYS B 184 THR B 187 -1 O LEU B 185 N ILE B 176 SHEET 1 AB4 4 VAL B 196 PHE B 201 0 SHEET 2 AB4 4 TYR B 207 THR B 212 -1 O LEU B 209 N LYS B 200 SHEET 3 AB4 4 THR B 216 ASP B 221 -1 O TRP B 220 N ILE B 208 SHEET 4 AB4 4 LYS B 226 TYR B 231 -1 O TYR B 231 N LEU B 217 SHEET 1 AB5 4 ALA B 243 SER B 246 0 SHEET 2 AB5 4 TRP B 252 SER B 255 -1 O VAL B 254 N ASN B 244 SHEET 3 AB5 4 VAL B 262 ASN B 266 -1 O TYR B 263 N SER B 255 SHEET 4 AB5 4 ILE B 272 LEU B 276 -1 O VAL B 273 N ILE B 264 CISPEP 1 ASN A 193 PRO A 194 0 2.86 SITE 1 AC1 12 SER A 28 SER A 70 PHE A 112 PHE A 128 SITE 2 AC1 12 PRO A 152 SER A 154 TYR A 170 TYR A 239 SITE 3 AC1 12 CYS A 240 PHE A 242 ILE A 284 HOH A 697 SITE 1 AC2 9 ARG A 160 ASN A 204 LYS A 206 HOH A 504 SITE 2 AC2 9 HOH A 622 HOH A 794 SER B 96 HOH B 634 SITE 3 AC2 9 HOH B 668 SITE 1 AC3 13 SER B 28 SER B 70 PHE B 112 PHE B 128 SITE 2 AC3 13 PRO B 152 SER B 154 TYR B 170 TYR B 239 SITE 3 AC3 13 CYS B 240 PHE B 242 ILE B 284 HOH B 719 SITE 4 AC3 13 HOH B 756 SITE 1 AC4 7 SER A 96 ARG B 160 ASN B 204 LYS B 206 SITE 2 AC4 7 HOH B 518 HOH B 590 HOH B 632 CRYST1 46.684 53.635 65.310 108.03 90.15 106.27 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021421 0.006250 0.002195 0.00000 SCALE2 0.000000 0.019422 0.006634 0.00000 SCALE3 0.000000 0.000000 0.016180 0.00000