HEADER PROTEIN BINDING 11-JUL-18 6E2B TITLE UBIQUITIN IN COMPLEX WITH PT(2-PHENILPYRIDINE)(PPH3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN; COMPND 3 CHAIN: A, C, E, G, I, P SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 CELL: ERYTHROCYTES KEYWDS CYCLOMETALLATED PLATINUM (II) COMPLEX, UBIQUITIN, PLATINUM KEYWDS 2 COORDINATION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR V.A.ZHEMKOV,M.KIM REVDAT 3 11-OCT-23 6E2B 1 REMARK REVDAT 2 01-MAY-19 6E2B 1 JRNL REVDAT 1 14-NOV-18 6E2B 0 JRNL AUTH A.I.SOLOMATINA,P.S.CHELUSHKIN,T.O.ABAKUMOVA,V.A.ZHEMKOV, JRNL AUTH 2 M.KIM,I.BEZPROZVANNY,V.V.GURZHIY,A.S.MELNIKOV,Y.A.ANUFRIKOV, JRNL AUTH 3 I.O.KOSHEVOY,S.H.SU,P.T.CHOU,S.P.TUNIK JRNL TITL REACTIONS OF CYCLOMETALATED PLATINUM(II) JRNL TITL 2 [PT(N∧C)(PR3)CL] COMPLEXES WITH IMIDAZOLE AND JRNL TITL 3 IMIDAZOLE-CONTAINING BIOMOLECULES: FINE-TUNING OF REACTIVITY JRNL TITL 4 AND PHOTOPHYSICAL PROPERTIES VIA LIGAND DESIGN. JRNL REF INORG CHEM V. 58 204 2019 JRNL REFN ISSN 1520-510X JRNL PMID 30376305 JRNL DOI 10.1021/ACS.INORGCHEM.8B02204 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 99.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 3 NUMBER OF REFLECTIONS : 97458 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5131 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2770 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 36.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.3140 REMARK 3 BIN FREE R VALUE SET COUNT : 151 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 174 REMARK 3 SOLVENT ATOMS : 585 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : 0.14000 REMARK 3 B33 (A**2) : -0.28000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.067 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.049 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3970 ; 0.018 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2801 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5369 ; 2.359 ; 2.041 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6902 ; 0.936 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;36.069 ;25.607 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 790 ;12.126 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;17.393 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 622 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4244 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 725 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 17 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : P 201 P 297 REMARK 3 RESIDUE RANGE : I 201 I 293 REMARK 3 RESIDUE RANGE : G 101 G 196 REMARK 3 RESIDUE RANGE : E 201 E 300 REMARK 3 RESIDUE RANGE : C 201 C 307 REMARK 3 RESIDUE RANGE : A 201 A 292 REMARK 3 RESIDUE RANGE : P 101 P 104 REMARK 3 RESIDUE RANGE : E 101 E 101 REMARK 3 RESIDUE RANGE : C 101 C 104 REMARK 3 RESIDUE RANGE : I 101 I 103 REMARK 3 RESIDUE RANGE : A 101 A 105 REMARK 3 RESIDUE RANGE : P 1 P 76 REMARK 3 RESIDUE RANGE : I 1 I 76 REMARK 3 RESIDUE RANGE : G 1 G 76 REMARK 3 RESIDUE RANGE : E 1 E 76 REMARK 3 RESIDUE RANGE : C 1 C 76 REMARK 3 RESIDUE RANGE : A 1 A 76 REMARK 3 ORIGIN FOR THE GROUP (A): 49.1852 19.5381 -5.8355 REMARK 3 T TENSOR REMARK 3 T11: 0.0041 T22: 0.0077 REMARK 3 T33: 0.0050 T12: 0.0040 REMARK 3 T13: -0.0009 T23: -0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.1180 L22: 0.0962 REMARK 3 L33: 0.1477 L12: -0.0639 REMARK 3 L13: -0.0053 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0034 S13: 0.0111 REMARK 3 S21: -0.0065 S22: 0.0023 S23: -0.0109 REMARK 3 S31: -0.0012 S32: -0.0175 S33: -0.0079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.50 REMARK 3 ION PROBE RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E2B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235377. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 110120 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 99.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.16000 REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 36.7 REMARK 200 DATA REDUNDANCY IN SHELL : 10.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1UBQ REMARK 200 REMARK 200 REMARK: PRISM REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3M AMMONIUM SULFATE, 0.1M SODIUM REMARK 280 CITRATE BUFFER, PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.22350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 70.19050 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 70.19050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 15.61175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 70.19050 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 70.19050 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.83525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 70.19050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.19050 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 15.61175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 70.19050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.19050 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.83525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.22350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, G, I, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 SO4 I 101 O HOH I 201 1.43 REMARK 500 O3 SO4 I 101 O HOH I 202 1.65 REMARK 500 NE2 GLN I 31 O HOH I 203 1.75 REMARK 500 O HOH G 102 O HOH G 140 1.84 REMARK 500 OE1 GLN I 31 O HOH I 204 1.99 REMARK 500 NZ LYS G 6 O HOH I 202 1.99 REMARK 500 O HOH P 279 O HOH P 281 1.99 REMARK 500 O HOH P 249 O HOH P 256 2.04 REMARK 500 O HOH E 278 O HOH E 281 2.05 REMARK 500 O HOH G 104 O HOH G 157 2.06 REMARK 500 O HOH G 154 O HOH G 168 2.06 REMARK 500 O HOH A 290 O HOH C 226 2.08 REMARK 500 OE1 GLN I 2 O HOH I 205 2.09 REMARK 500 O HOH P 221 O HOH P 281 2.11 REMARK 500 O HOH E 264 O HOH E 285 2.15 REMARK 500 O HOH E 240 O HOH I 215 2.16 REMARK 500 N LEU I 73 O HOH I 206 2.16 REMARK 500 O HOH A 205 O HOH G 172 2.17 REMARK 500 O HOH C 273 O HOH C 286 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH I 207 O HOH P 204 3544 1.58 REMARK 500 O HOH C 205 O HOH P 256 3545 1.60 REMARK 500 O HOH G 161 O HOH G 179 7554 1.77 REMARK 500 NE2 GLN I 62 O HOH C 272 1554 1.84 REMARK 500 O HOH E 261 O HOH I 272 3545 1.99 REMARK 500 O HOH G 176 O HOH G 188 7554 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU C 64 -4.09 77.91 REMARK 500 ARG I 74 113.73 73.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 306 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 307 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH E 300 DISTANCE = 5.98 ANGSTROMS REMARK 525 HOH I 293 DISTANCE = 7.06 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT7 A 105 PT20 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 68 ND1 REMARK 620 2 PT7 A 105 P1 93.3 REMARK 620 3 PT7 A 105 C3 168.0 96.8 REMARK 620 4 PT7 A 105 N19 88.2 174.0 81.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT7 C 103 PT20 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 68 ND1 REMARK 620 2 PT7 C 103 P1 92.3 REMARK 620 3 PT7 C 103 C3 172.6 95.1 REMARK 620 4 PT7 C 103 N19 93.7 173.4 79.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PT7 P 104 PT20 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS P 68 ND1 REMARK 620 2 PT7 P 104 P1 94.9 REMARK 620 3 PT7 P 104 C3 165.1 96.2 REMARK 620 4 PT7 P 104 N19 89.4 175.6 79.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT7 A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT7 C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL C 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 I 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL I 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL I 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 P 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PT7 P 104 DBREF 6E2B A 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6E2B C 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6E2B E 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6E2B G 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6E2B I 1 76 UNP P62992 RS27A_BOVIN 1 76 DBREF 6E2B P 1 76 UNP P62992 RS27A_BOVIN 1 76 SEQRES 1 A 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 A 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 A 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 A 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 A 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 A 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 C 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 C 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 C 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 C 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 C 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 C 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 E 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 E 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 E 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 E 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 E 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 E 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 G 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 G 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 G 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 G 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 G 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 G 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 I 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 I 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 I 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 I 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 I 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 I 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY SEQRES 1 P 76 MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR ILE SEQRES 2 P 76 THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN VAL SEQRES 3 P 76 LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO ASP SEQRES 4 P 76 GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU ASP SEQRES 5 P 76 GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SER SEQRES 6 P 76 THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY HET SO4 A 101 5 HET SO4 A 102 5 HET GOL A 103 6 HET GOL A 104 6 HET PT7 A 105 32 HET GOL C 101 6 HET GOL C 102 6 HET PT7 C 103 32 HET GOL C 104 6 HET GOL E 101 6 HET SO4 I 101 5 HET GOL I 102 6 HET GOL I 103 6 HET SO4 P 101 5 HET SO4 P 102 5 HET SO4 P 103 5 HET PT7 P 104 32 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM PT7 CHLORO[2-(PYRIDIN-2-YL-KAPPAN)PHENYL- HETNAM 2 PT7 KAPPAC~1~](TRIPHENYL-LAMBDA~5~-PHOSPHANYL)PLATINUM(2+) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN PT7 PTII(2-PHENYLPYRIDINE)(TRI-PHENYLPHOSPHINE)CL FORMUL 7 SO4 6(O4 S 2-) FORMUL 9 GOL 8(C3 H8 O3) FORMUL 11 PT7 3(C29 H23 CL N P PT 2+) FORMUL 24 HOH *585(H2 O) HELIX 1 AA1 THR A 22 GLY A 35 1 14 HELIX 2 AA2 PRO A 37 ASP A 39 5 3 HELIX 3 AA3 LEU A 56 ASN A 60 5 5 HELIX 4 AA4 THR C 22 GLY C 35 1 14 HELIX 5 AA5 PRO C 37 ASP C 39 5 3 HELIX 6 AA6 THR C 55 ASN C 60 5 6 HELIX 7 AA7 THR E 22 GLY E 35 1 14 HELIX 8 AA8 PRO E 37 ASP E 39 5 3 HELIX 9 AA9 THR G 22 GLY G 35 1 14 HELIX 10 AB1 PRO G 37 ASP G 39 5 3 HELIX 11 AB2 LEU G 56 ASN G 60 5 5 HELIX 12 AB3 THR I 22 GLY I 35 1 14 HELIX 13 AB4 PRO I 37 ASP I 39 5 3 HELIX 14 AB5 LEU I 56 ASN I 60 5 5 HELIX 15 AB6 THR P 22 GLY P 35 1 14 HELIX 16 AB7 PRO P 37 ASP P 39 5 3 HELIX 17 AB8 LEU P 56 ASN P 60 5 5 SHEET 1 AA1 5 ILE A 13 GLU A 16 0 SHEET 2 AA1 5 GLN A 2 LYS A 6 -1 N VAL A 5 O ILE A 13 SHEET 3 AA1 5 THR A 66 LEU A 71 1 O LEU A 69 N LYS A 6 SHEET 4 AA1 5 GLN A 41 PHE A 45 -1 N ILE A 44 O HIS A 68 SHEET 5 AA1 5 LYS A 48 GLN A 49 -1 O LYS A 48 N PHE A 45 SHEET 1 AA2 5 ILE C 13 GLU C 16 0 SHEET 2 AA2 5 GLN C 2 THR C 7 -1 N VAL C 5 O ILE C 13 SHEET 3 AA2 5 THR C 66 LEU C 71 1 O LEU C 69 N LYS C 6 SHEET 4 AA2 5 GLN C 41 PHE C 45 -1 N ILE C 44 O HIS C 68 SHEET 5 AA2 5 LYS C 48 GLN C 49 -1 O LYS C 48 N PHE C 45 SHEET 1 AA3 5 THR E 12 GLU E 16 0 SHEET 2 AA3 5 GLN E 2 LYS E 6 -1 N VAL E 5 O ILE E 13 SHEET 3 AA3 5 THR E 66 LEU E 71 1 O LEU E 69 N LYS E 6 SHEET 4 AA3 5 GLN E 41 PHE E 45 -1 N ILE E 44 O HIS E 68 SHEET 5 AA3 5 LYS E 48 GLN E 49 -1 O LYS E 48 N PHE E 45 SHEET 1 AA4 5 THR G 12 GLU G 16 0 SHEET 2 AA4 5 GLN G 2 LYS G 6 -1 N ILE G 3 O LEU G 15 SHEET 3 AA4 5 THR G 66 LEU G 71 1 O LEU G 69 N LYS G 6 SHEET 4 AA4 5 GLN G 41 PHE G 45 -1 N ILE G 44 O HIS G 68 SHEET 5 AA4 5 LYS G 48 GLN G 49 -1 O LYS G 48 N PHE G 45 SHEET 1 AA5 5 THR I 12 GLU I 16 0 SHEET 2 AA5 5 GLN I 2 LYS I 6 -1 N VAL I 5 O ILE I 13 SHEET 3 AA5 5 THR I 66 LEU I 71 1 O LEU I 67 N PHE I 4 SHEET 4 AA5 5 GLN I 41 PHE I 45 -1 N ILE I 44 O HIS I 68 SHEET 5 AA5 5 LYS I 48 GLN I 49 -1 O LYS I 48 N PHE I 45 SHEET 1 AA6 5 THR P 12 GLU P 16 0 SHEET 2 AA6 5 GLN P 2 LYS P 6 -1 N VAL P 5 O ILE P 13 SHEET 3 AA6 5 THR P 66 LEU P 71 1 O LEU P 69 N LYS P 6 SHEET 4 AA6 5 GLN P 41 PHE P 45 -1 N ILE P 44 O HIS P 68 SHEET 5 AA6 5 LYS P 48 GLN P 49 -1 O LYS P 48 N PHE P 45 LINK ND1 HIS A 68 PT20 PT7 A 105 1555 1555 2.13 LINK ND1 HIS C 68 PT20 PT7 C 103 1555 1555 2.22 LINK ND1 HIS P 68 PT20 PT7 P 104 1555 1555 2.13 SITE 1 AC1 8 ARG A 72 ARG A 74 GLY A 75 HOH A 213 SITE 2 AC1 8 HOH A 228 LYS C 6 HOH C 218 HOH C 245 SITE 1 AC2 8 ARG A 42 GLN A 49 ARG A 72 HOH A 220 SITE 2 AC2 8 HOH A 230 HOH A 264 LYS C 6 HIS C 68 SITE 1 AC3 6 SER A 65 THR A 66 HOH A 203 HOH A 229 SITE 2 AC3 6 HOH A 245 HOH A 274 SITE 1 AC4 6 LYS A 48 ARG A 54 HOH A 212 HOH A 216 SITE 2 AC4 6 HOH A 252 HOH A 262 SITE 1 AC5 14 LYS A 6 THR A 7 LEU A 8 ILE A 44 SITE 2 AC5 14 ALA A 46 GLY A 47 HIS A 68 LEU A 69 SITE 3 AC5 14 PT7 C 103 THR I 9 GLY P 47 GLN P 49 SITE 4 AC5 14 VAL P 70 PT7 P 104 SITE 1 AC6 9 ARG C 42 GLN C 49 ARG C 72 GOL C 102 SITE 2 AC6 9 GOL C 104 LYS E 11 HOH E 202 HIS P 68 SITE 3 AC6 9 PT7 P 104 SITE 1 AC7 13 ARG C 42 GLN C 49 GLU C 51 ARG C 72 SITE 2 AC7 13 GOL C 101 GOL C 104 HOH C 223 HOH C 224 SITE 3 AC7 13 HOH C 238 LYS P 6 THR P 66 HIS P 68 SITE 4 AC7 13 HOH P 209 SITE 1 AC8 14 GLY A 47 GLN A 49 VAL A 70 PT7 A 105 SITE 2 AC8 14 LYS C 6 THR C 7 LEU C 8 ILE C 44 SITE 3 AC8 14 ALA C 46 GLY C 47 HIS C 68 THR E 9 SITE 4 AC8 14 THR G 9 PT7 P 104 SITE 1 AC9 8 ARG C 72 ARG C 74 GLY C 75 GOL C 101 SITE 2 AC9 8 GOL C 102 LYS E 11 GLN P 31 HOH P 237 SITE 1 AD1 10 ILE E 44 ALA E 46 GLY E 47 HIS E 68 SITE 2 AD1 10 HOH E 216 ALA G 46 HIS G 68 HOH G 101 SITE 3 AD1 10 HIS I 68 GOL I 102 SITE 1 AD2 11 LYS E 6 HIS E 68 LYS G 6 HIS G 68 SITE 2 AD2 11 LYS I 6 HIS I 68 GOL I 102 HOH I 201 SITE 3 AD2 11 HOH I 202 HOH I 238 HOH I 246 SITE 1 AD3 10 THR E 66 HIS E 68 GOL E 101 ILE I 44 SITE 2 AD3 10 ALA I 46 GLY I 47 HIS I 68 SO4 I 101 SITE 3 AD3 10 HOH I 211 HOH I 217 SITE 1 AD4 4 LYS I 48 ARG I 54 HOH I 212 HOH I 213 SITE 1 AD5 10 LYS A 6 THR A 66 HIS A 68 ARG P 42 SITE 2 AD5 10 GLN P 49 ARG P 72 HOH P 201 HOH P 216 SITE 3 AD5 10 HOH P 226 HOH P 238 SITE 1 AD6 5 LYS P 48 ARG P 54 HOH P 202 HOH P 210 SITE 2 AD6 5 HOH P 227 SITE 1 AD7 9 LYS A 6 HOH A 204 HOH A 211 ARG P 72 SITE 2 AD7 9 ARG P 74 GLY P 75 HOH P 201 HOH P 231 SITE 3 AD7 9 HOH P 251 SITE 1 AD8 14 PT7 A 105 GLY C 47 GOL C 101 PT7 C 103 SITE 2 AD8 14 THR E 9 LYS P 6 THR P 7 LEU P 8 SITE 3 AD8 14 ILE P 44 ALA P 46 GLY P 47 HIS P 68 SITE 4 AD8 14 LEU P 69 VAL P 70 CRYST1 140.381 140.381 62.447 90.00 90.00 90.00 P 41 21 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007123 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016014 0.00000