HEADER IMMUNE SYSTEM 18-JUL-18 6E4Z TITLE ANTI-PCSK9 FAB 6E2 BOUND TO THE MODIFIED N-TERMINAL PEPTIDE FROM PCSK9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 6E2 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 FRAGMENT: FAB; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 6E2 LIGHT CHAIN; COMPND 8 CHAIN: L; COMPND 9 FRAGMENT: FAB; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PROPROTEIN CONVERTASE SUBTILISIN/KEXIN TYPE 9; COMPND 13 CHAIN: P; COMPND 14 FRAGMENT: UNP RESIDUES 32-53; COMPND 15 SYNONYM: NEURAL APOPTOSIS-REGULATED CONVERTASE 1, NARC-1, PROPROTEIN COMPND 16 CONVERTASE 9, PC9, SUBTILISIN/KEXIN-LIKE PROTEASE PC9; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 12 ORGANISM_COMMON: MOUSE; SOURCE 13 ORGANISM_TAXID: 10090; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: 64B4; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBR322; SOURCE 19 MOL_ID: 3; SOURCE 20 SYNTHETIC: YES; SOURCE 21 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 22 ORGANISM_COMMON: HUMAN; SOURCE 23 ORGANISM_TAXID: 9606 KEYWDS ANTIBODY, HYDROLASE, PCSK9, FAB COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.H.ULTSCH,D.K.KIRCHHOFER REVDAT 3 15-NOV-23 6E4Z 1 REMARK REVDAT 2 11-OCT-23 6E4Z 1 LINK REVDAT 1 10-APR-19 6E4Z 0 JRNL AUTH M.ULTSCH,W.LI,C.EIGENBROT,P.DI LELLO,M.T.LIPARI,S.GERHARDY, JRNL AUTH 2 A.P.AHYOUNG,J.QUINN,Y.FRANKE,Y.CHEN,M.KONG BELTRAN, JRNL AUTH 3 A.PETERSON,D.KIRCHHOFER JRNL TITL IDENTIFICATION OF A HELICAL SEGMENT WITHIN THE INTRINSICALLY JRNL TITL 2 DISORDERED REGION OF THE PCSK9 PRODOMAIN. JRNL REF J. MOL. BIOL. V. 431 885 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 30653992 JRNL DOI 10.1016/J.JMB.2018.11.025 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1-2155_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.42 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.350 REMARK 3 FREE R VALUE TEST SET COUNT : 1060 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.4204 - 4.4006 1.00 4013 143 0.1701 0.2141 REMARK 3 2 4.4006 - 3.4941 1.00 3850 156 0.1716 0.1973 REMARK 3 3 3.4941 - 3.0527 1.00 3837 132 0.2108 0.2802 REMARK 3 4 3.0527 - 2.7738 1.00 3806 128 0.2279 0.2680 REMARK 3 5 2.7738 - 2.5750 1.00 3808 134 0.2272 0.2780 REMARK 3 6 2.5750 - 2.4233 1.00 3775 126 0.2291 0.2657 REMARK 3 7 2.4233 - 2.3019 1.00 3780 122 0.2360 0.2725 REMARK 3 8 2.3019 - 2.2018 0.98 3707 119 0.2705 0.3134 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 3544 REMARK 3 ANGLE : 1.039 4808 REMARK 3 CHIRALITY : 0.054 535 REMARK 3 PLANARITY : 0.006 610 REMARK 3 DIHEDRAL : 13.541 2102 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:114) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1883 36.6349 -12.4311 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3082 REMARK 3 T33: 0.3698 T12: 0.0565 REMARK 3 T13: 0.1061 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 1.6675 L22: 2.0305 REMARK 3 L33: 2.1471 L12: 0.4564 REMARK 3 L13: 0.4533 L23: -0.2908 REMARK 3 S TENSOR REMARK 3 S11: 0.0614 S12: 0.0832 S13: 0.1364 REMARK 3 S21: -0.2391 S22: 0.0325 S23: -0.2240 REMARK 3 S31: -0.0352 S32: 0.0865 S33: -0.0922 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN L AND RESID 1:107) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0920 17.7578 -11.5710 REMARK 3 T TENSOR REMARK 3 T11: 0.3245 T22: 0.2802 REMARK 3 T33: 0.3545 T12: 0.0209 REMARK 3 T13: 0.0377 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 3.6952 L22: 3.2352 REMARK 3 L33: 2.7993 L12: 1.3720 REMARK 3 L13: -0.9464 L23: 0.2957 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: 0.1777 S13: -0.4944 REMARK 3 S21: -0.1733 S22: -0.0428 S23: -0.1477 REMARK 3 S31: 0.4326 S32: -0.1677 S33: 0.0810 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 115:214) REMARK 3 ORIGIN FOR THE GROUP (A): -17.0998 41.3125 -38.5206 REMARK 3 T TENSOR REMARK 3 T11: 0.9213 T22: 0.5940 REMARK 3 T33: 0.6674 T12: 0.0445 REMARK 3 T13: -0.2732 T23: -0.0675 REMARK 3 L TENSOR REMARK 3 L11: 1.5855 L22: 1.7257 REMARK 3 L33: 1.5852 L12: 1.0438 REMARK 3 L13: 0.5809 L23: 0.1517 REMARK 3 S TENSOR REMARK 3 S11: -0.2103 S12: 0.0688 S13: 0.5088 REMARK 3 S21: -0.8767 S22: 0.0388 S23: 0.9204 REMARK 3 S31: -0.4582 S32: -0.3542 S33: 0.1385 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 108:213) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9583 26.8299 -46.8315 REMARK 3 T TENSOR REMARK 3 T11: 0.9049 T22: 0.7632 REMARK 3 T33: 0.5271 T12: -0.0669 REMARK 3 T13: -0.1649 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 1.4008 L22: 1.8312 REMARK 3 L33: 2.1572 L12: 0.9508 REMARK 3 L13: -0.0687 L23: -0.0693 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: 0.4616 S13: 0.1386 REMARK 3 S21: -0.5556 S22: 0.2705 S23: 0.1375 REMARK 3 S31: 0.0169 S32: -0.1925 S33: -0.0857 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN P) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9762 28.1307 5.1510 REMARK 3 T TENSOR REMARK 3 T11: 0.4614 T22: 0.5224 REMARK 3 T33: 0.4065 T12: -0.0659 REMARK 3 T13: 0.0561 T23: 0.1066 REMARK 3 L TENSOR REMARK 3 L11: 7.3526 L22: 5.1914 REMARK 3 L33: 8.1675 L12: 2.5370 REMARK 3 L13: 0.6708 L23: -0.2100 REMARK 3 S TENSOR REMARK 3 S11: 0.0667 S12: -1.1774 S13: -0.7110 REMARK 3 S21: 0.8379 S22: -0.2388 S23: -0.3779 REMARK 3 S31: 0.2914 S32: -0.6654 S33: 0.1655 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31726 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 33.420 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.82700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6E4Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% W/V PEG8000, 0.2 M ZINC ACETATE, REMARK 280 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 35.46450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.89100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.46450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.89100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -200.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 446 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 THR H 221 REMARK 465 CYS L 214 REMARK 465 GLU P 32 REMARK 465 ASP P 33 REMARK 465 GLU P 34 REMARK 465 ASP P 50 REMARK 465 GLY P 51 REMARK 465 LEU P 52 REMARK 465 ALA P 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU H 148 O HOH H 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE H 27 115.28 -167.81 REMARK 500 ASP H 144 71.64 67.65 REMARK 500 SER H 161 -83.40 -61.77 REMARK 500 THR H 191 -85.03 -139.88 REMARK 500 GLN H 192 96.32 -66.76 REMARK 500 SER L 27E 54.20 -61.12 REMARK 500 ASN L 28 -154.62 -147.39 REMARK 500 MET L 51 -37.71 80.90 REMARK 500 ASN L 138 79.26 52.93 REMARK 500 LYS L 190 -60.94 -102.51 REMARK 500 SEP P 47 68.16 -158.97 REMARK 500 SEP P 47 63.34 -161.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN H 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP H 53 OD1 REMARK 620 2 ASP L 60 OD1 72.3 REMARK 620 3 HOH L 446 O 107.0 112.6 REMARK 620 4 GLU P 48 OE2 117.5 47.8 110.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS H 164 NE2 REMARK 620 2 ASN L 137 OD1 101.3 REMARK 620 3 ASN L 138 OD1 89.6 78.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS L 27D NE2 REMARK 620 2 GLU P 49 OE2 73.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU L 81 OE1 REMARK 620 2 GLU L 81 OE2 66.3 REMARK 620 3 HOH L 438 O 79.9 138.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN L 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 185 OD2 REMARK 620 2 HIS L 189 NE2 118.6 REMARK 620 3 SO4 L 305 O1 100.9 105.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN L 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 305 DBREF 6E4Z H 1 221 PDB 6E4Z 6E4Z 1 221 DBREF 6E4Z L 1 106 PDB 6E4Z 6E4Z 1 106 DBREF1 6E4Z L 107 214 UNP A0A097PUG4_MOUSE DBREF2 6E4Z L A0A097PUG4 131 238 DBREF 6E4Z P 32 53 UNP Q8NBP7 PCSK9_HUMAN 32 53 SEQRES 1 H 224 GLU VAL LYS LEU GLU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 224 PRO GLY GLY SER MET LYS LEU SER CYS VAL ALA SER ARG SEQRES 3 H 224 PHE THR LEU SER LYS TYR TRP MET ASN TRP VAL ARG GLN SEQRES 4 H 224 SER PRO GLU LYS GLY LEU GLU TRP VAL ALA GLN ILE ARG SEQRES 5 H 224 LEU LYS SER ASP ASN TYR ALA THR NEP TYR ALA GLU SER SEQRES 6 H 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASP SER LYS SEQRES 7 H 224 SER SER VAL TYR LEU GLN MET ASN ASN LEU ARG ALA GLU SEQRES 8 H 224 ASP THR GLY ILE TYR TYR CYS THR GLY GLU ILE PHE VAL SEQRES 9 H 224 ASN TRP GLY GLN GLY THR LEU VAL THR VAL SER ALA ALA SEQRES 10 H 224 SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SEQRES 11 H 224 SER LYS SER THR SER GLY GLY THR ALA ALA LEU GLY CYS SEQRES 12 H 224 LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER SEQRES 13 H 224 TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS THR PHE SEQRES 14 H 224 PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SEQRES 15 H 224 SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR GLN SEQRES 16 H 224 THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR SEQRES 17 H 224 LYS VAL ASP LYS LYS VAL GLU PRO LYS SER CYS ASP LYS SEQRES 18 H 224 THR HIS THR SEQRES 1 L 219 ASP ILE VAL MET THR GLN ALA ALA PRO SER VAL PRO VAL SEQRES 2 L 219 THR PRO GLY GLU SER VAL SER ILE SER CYS ARG SER SER SEQRES 3 L 219 LYS SER LEU LEU HIS SER ASN GLY ASN THR TYR LEU TYR SEQRES 4 L 219 TRP PHE LEU GLN ARG PRO GLY GLN SER PRO GLN LEU LEU SEQRES 5 L 219 ILE TYR ARG MET SER ASN LEU ALA SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ALA PHE THR LEU SEQRES 7 L 219 ARG ILE SER ARG VAL GLU ALA GLU ASP VAL GLY VAL TYR SEQRES 8 L 219 TYR CYS MET GLN HIS LEU GLU TYR PRO PHE THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU LEU LYS ARG THR VAL ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS SEQRES 1 P 22 GLU ASP GLU ASP GLY ASP TYS GLU GLU LEU VAL LEU ALA SEQRES 2 P 22 LEU ARG SEP GLU GLU ASP GLY LEU ALA MODRES 6E4Z TYS P 38 TYR MODIFIED RESIDUE MODRES 6E4Z SEP P 47 SER MODIFIED RESIDUE HET NEP H 58 14 HET HIP H 58 14 HET TYS P 38 16 HET SEP P 47 20 HET ZN H 301 1 HET ZN L 301 1 HET ZN L 302 1 HET ZN L 303 1 HET ZN L 304 1 HET SO4 L 305 5 HETNAM NEP N1-PHOSPHONOHISTIDINE HETNAM HIP ND1-PHOSPHONOHISTIDINE HETNAM TYS O-SULFO-L-TYROSINE HETNAM SEP PHOSPHOSERINE HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETSYN SEP PHOSPHONOSERINE FORMUL 1 NEP C6 H10 N3 O5 P FORMUL 1 HIP C6 H11 N3 O5 P 1+ FORMUL 3 TYS C9 H11 N O6 S FORMUL 3 SEP C3 H8 N O6 P FORMUL 4 ZN 5(ZN 2+) FORMUL 9 SO4 O4 S 2- FORMUL 10 HOH *122(H2 O) HELIX 1 AA1 THR H 28 TYR H 32 5 5 HELIX 2 AA2 LEU H 52A ASN H 54 5 5 HELIX 3 AA3 ASP H 73 LYS H 75 5 3 HELIX 4 AA4 ARG H 83 THR H 87 5 5 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 LYS H 201 ASN H 204 5 4 HELIX 7 AA7 GLU L 79 VAL L 83 5 5 HELIX 8 AA8 SER L 121 GLY L 128 1 8 HELIX 9 AA9 LYS L 183 GLU L 187 1 5 HELIX 10 AB1 GLY P 36 ARG P 46 1 11 SHEET 1 AA1 4 LYS H 3 SER H 7 0 SHEET 2 AA1 4 MET H 18 SER H 25 -1 O SER H 25 N LYS H 3 SHEET 3 AA1 4 SER H 77 MET H 82 -1 O MET H 82 N MET H 18 SHEET 4 AA1 4 PHE H 67 ASP H 72 -1 N THR H 68 O GLN H 81 SHEET 1 AA2 6 GLY H 10 VAL H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N GLY H 10 SHEET 3 AA2 6 GLY H 88 THR H 93 -1 N GLY H 88 O VAL H 109 SHEET 4 AA2 6 MET H 34 SER H 40 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLY H 44 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O NEP H 58 N GLN H 50 SHEET 1 AA3 4 SER H 120 LEU H 124 0 SHEET 2 AA3 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA3 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 AA3 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA4 4 TYR H 176 VAL H 184 -1 O VAL H 182 N LEU H 138 SHEET 4 AA4 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA5 3 THR H 151 TRP H 154 0 SHEET 2 AA5 3 TYR H 194 HIS H 200 -1 O ASN H 199 N THR H 151 SHEET 3 AA5 3 THR H 205 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AA6 4 MET L 4 THR L 5 0 SHEET 2 AA6 4 VAL L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA6 4 ALA L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA6 4 PHE L 62 SER L 67 -1 N SER L 63 O ARG L 74 SHEET 1 AA7 6 SER L 10 VAL L 13 0 SHEET 2 AA7 6 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 11 SHEET 3 AA7 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA7 6 LEU L 33 GLN L 38 -1 N TYR L 34 O MET L 89 SHEET 5 AA7 6 GLN L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA7 6 ASN L 53 LEU L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AA8 4 SER L 10 VAL L 13 0 SHEET 2 AA8 4 THR L 102 LEU L 106 1 O GLU L 105 N VAL L 11 SHEET 3 AA8 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 AA8 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA9 4 SER L 114 PHE L 118 0 SHEET 2 AA9 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AA9 4 TYR L 173 SER L 182 -1 O LEU L 181 N ALA L 130 SHEET 4 AA9 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB1 4 ALA L 153 LEU L 154 0 SHEET 2 AB1 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB1 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AB1 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.06 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.04 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.03 LINK C THR H 57 N ANEP H 58 1555 1555 1.33 LINK C THR H 57 N BHIP H 58 1555 1555 1.33 LINK C ANEP H 58 N TYR H 59 1555 1555 1.33 LINK C BHIP H 58 N TYR H 59 1555 1555 1.33 LINK C ASP P 37 N TYS P 38 1555 1555 1.33 LINK C TYS P 38 N GLU P 39 1555 1555 1.33 LINK C ARG P 46 N ASEP P 47 1555 1555 1.33 LINK C ARG P 46 N BSEP P 47 1555 1555 1.33 LINK C ASEP P 47 N GLU P 48 1555 1555 1.33 LINK C BSEP P 47 N GLU P 48 1555 1555 1.33 LINK OD1 ASP H 53 ZN ZN H 301 1555 1555 1.95 LINK NE2 HIS H 164 ZN ZN L 301 1555 1555 2.07 LINK ZN ZN H 301 OD1 ASP L 60 4455 1555 1.89 LINK ZN ZN H 301 O HOH L 446 1555 4555 2.19 LINK ZN ZN H 301 OE2 GLU P 48 1555 1555 2.00 LINK NE2 HIS L 27D ZN ZN L 304 1555 1555 2.02 LINK OE1 GLU L 81 ZN ZN L 303 1555 1555 2.01 LINK OE2 GLU L 81 ZN ZN L 303 1555 1555 2.00 LINK OD1 ASN L 137 ZN ZN L 301 1555 1555 2.11 LINK OD1 ASN L 138 ZN ZN L 301 1555 1555 2.04 LINK OD2 ASP L 185 ZN ZN L 302 1555 1555 2.06 LINK NE2 HIS L 189 ZN ZN L 302 1555 1555 2.08 LINK ZN ZN L 302 O1 SO4 L 305 1555 1555 2.29 LINK ZN ZN L 303 O HOH L 438 1555 1555 2.59 LINK ZN ZN L 304 OE2 GLU P 49 1555 1555 2.01 CISPEP 1 PHE H 146 PRO H 147 0 -10.57 CISPEP 2 GLU H 148 PRO H 149 0 -0.59 CISPEP 3 TYR L 94 PRO L 95 0 -1.71 CISPEP 4 TYR L 140 PRO L 141 0 -0.29 SITE 1 AC1 4 ASP H 53 ASP L 60 HOH L 446 GLU P 48 SITE 1 AC2 4 HIS H 164 ASN L 137 ASN L 138 HOH L 414 SITE 1 AC3 3 ASP L 185 HIS L 189 SO4 L 305 SITE 1 AC4 2 GLU L 81 HOH L 438 SITE 1 AC5 4 HIS L 27D HOH L 442 SEP P 47 GLU P 49 SITE 1 AC6 4 GLN L 155 ASP L 185 HIS L 189 ZN L 302 CRYST1 70.929 99.782 86.328 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014099 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011584 0.00000