HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUL-18 6E54 TITLE CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN COMPLEX WITH TITLE 2 LIGAND PT802 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PSAEA.00166.A.DG15; COMPND 5 SYNONYM: UDP-3-O-ACYL-GLCNAC DEACETYLASE,UDP-3-O-[R-3- COMPND 6 HYDROXYMYRISTOYL]-N-ACETYLGLUCOSAMINE DEACETYLASE; COMPND 7 EC: 3.5.1.108; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 SOURCE 5 / 1C / PRS 101 / PAO1; SOURCE 6 GENE: LPXC, ENVA, PA4406; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSAEA.00166.A.DG15 KEYWDS INHIBITOR, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER KEYWDS 2 FOR INFECTIOUS DISEASE, SSGCID, LPXC, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6E54 1 LINK REVDAT 1 26-JUN-19 6E54 0 JRNL AUTH S.L.DELKER,S.J.MAYCLIN,J.N.PHAN,J.ABENDROTH,D.LORIMER, JRNL AUTH 2 T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF LPXC FROM PSEUDOMONAS AERUGINOSA IN JRNL TITL 2 COMPLEX WITH LIGAND PT802 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14RC2_3191: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 31216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.151 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.260 REMARK 3 FREE R VALUE TEST SET COUNT : 1953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.5936 - 3.9755 0.99 2136 142 0.1245 0.1462 REMARK 3 2 3.9755 - 3.1559 0.99 2162 124 0.1249 0.1401 REMARK 3 3 3.1559 - 2.7571 0.99 2148 131 0.1525 0.1824 REMARK 3 4 2.7571 - 2.5050 0.98 2111 141 0.1494 0.1780 REMARK 3 5 2.5050 - 2.3255 0.98 2113 161 0.1477 0.2053 REMARK 3 6 2.3255 - 2.1884 0.97 2073 135 0.1469 0.1902 REMARK 3 7 2.1884 - 2.0788 0.97 2100 154 0.1503 0.1756 REMARK 3 8 2.0788 - 1.9883 0.97 2090 142 0.1490 0.1961 REMARK 3 9 1.9883 - 1.9118 0.96 2123 122 0.1538 0.2293 REMARK 3 10 1.9118 - 1.8458 0.96 2068 139 0.1658 0.2139 REMARK 3 11 1.8458 - 1.7881 0.97 2093 135 0.1811 0.2289 REMARK 3 12 1.7881 - 1.7370 0.96 2042 149 0.1868 0.2528 REMARK 3 13 1.7370 - 1.6913 0.96 2037 155 0.1943 0.2165 REMARK 3 14 1.6913 - 1.6500 0.89 1967 123 0.2167 0.2319 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.37 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2579 REMARK 3 ANGLE : 0.941 3528 REMARK 3 CHIRALITY : 0.055 402 REMARK 3 PLANARITY : 0.005 455 REMARK 3 DIHEDRAL : 18.678 1574 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4668 6.3439 -12.0588 REMARK 3 T TENSOR REMARK 3 T11: 0.0597 T22: 0.0665 REMARK 3 T33: 0.0739 T12: 0.0149 REMARK 3 T13: 0.0026 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.3086 L22: 1.1345 REMARK 3 L33: 0.6609 L12: -0.0100 REMARK 3 L13: 0.0652 L23: 0.2010 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0505 S13: 0.0047 REMARK 3 S21: -0.0682 S22: -0.0607 S23: 0.0592 REMARK 3 S31: -0.0512 S32: -0.0846 S33: 0.0201 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 48 THROUGH 117 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8007 6.1330 -5.1148 REMARK 3 T TENSOR REMARK 3 T11: 0.0655 T22: 0.0557 REMARK 3 T33: 0.0500 T12: 0.0149 REMARK 3 T13: -0.0028 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 1.0356 L22: 1.1898 REMARK 3 L33: 0.8356 L12: 0.2564 REMARK 3 L13: -0.3210 L23: 0.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.0370 S12: -0.0067 S13: 0.0471 REMARK 3 S21: -0.0113 S22: -0.0228 S23: -0.0593 REMARK 3 S31: -0.0662 S32: 0.0432 S33: -0.0030 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 118 THROUGH 147 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.7769 -9.4114 -1.6684 REMARK 3 T TENSOR REMARK 3 T11: 0.0266 T22: 0.0324 REMARK 3 T33: 0.0617 T12: -0.0164 REMARK 3 T13: 0.0309 T23: 0.0198 REMARK 3 L TENSOR REMARK 3 L11: 1.9674 L22: 1.1858 REMARK 3 L33: 2.2377 L12: -0.4301 REMARK 3 L13: 1.0001 L23: 0.2188 REMARK 3 S TENSOR REMARK 3 S11: 0.0830 S12: 0.0069 S13: -0.1186 REMARK 3 S21: 0.0627 S22: 0.0587 S23: -0.0764 REMARK 3 S31: 0.1567 S32: 0.1657 S33: -0.1550 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 148 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6881 -5.8741 15.4812 REMARK 3 T TENSOR REMARK 3 T11: 0.0795 T22: 0.1079 REMARK 3 T33: 0.0833 T12: -0.0198 REMARK 3 T13: -0.0040 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.9864 L22: 3.5074 REMARK 3 L33: 6.7820 L12: -1.8543 REMARK 3 L13: -2.5662 L23: 4.7741 REMARK 3 S TENSOR REMARK 3 S11: -0.0596 S12: -0.1104 S13: -0.0586 REMARK 3 S21: 0.3235 S22: 0.0249 S23: -0.0259 REMARK 3 S31: 0.4047 S32: 0.0256 S33: 0.0617 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 249 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6418 3.1785 10.2036 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0814 REMARK 3 T33: 0.0571 T12: 0.0051 REMARK 3 T13: -0.0083 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 0.9987 L22: 1.3576 REMARK 3 L33: 1.7122 L12: 0.0961 REMARK 3 L13: -0.2720 L23: 0.4674 REMARK 3 S TENSOR REMARK 3 S11: 0.0482 S12: -0.0571 S13: 0.0001 REMARK 3 S21: 0.1253 S22: -0.0903 S23: 0.1020 REMARK 3 S31: 0.0045 S32: -0.0848 S33: 0.0433 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 250 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.2209 -10.2207 -3.1770 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0511 REMARK 3 T33: 0.0749 T12: 0.0236 REMARK 3 T13: -0.0012 T23: 0.0252 REMARK 3 L TENSOR REMARK 3 L11: 1.3328 L22: 1.2137 REMARK 3 L33: 1.0709 L12: 1.0170 REMARK 3 L13: 0.5754 L23: 0.8236 REMARK 3 S TENSOR REMARK 3 S11: -0.0012 S12: 0.0293 S13: -0.0501 REMARK 3 S21: 0.0110 S22: 0.0216 S23: -0.0379 REMARK 3 S31: 0.0613 S32: 0.0274 S33: -0.0231 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E54 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235729. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31220 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 39.582 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 3.926 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.55 REMARK 200 R MERGE FOR SHELL (I) : 0.48300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.510 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5UPG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRAY298106 C1: 100 MM TRIS-HCL, PH REMARK 280 8.5, 100 MM MGCL, 25% (W/V) PEG 400, 20% (W/V) PEG 3350, 1MM REMARK 280 BSI108452 (PT802) : CRYO = DIRECT : PSAEA.00166.A.DG15.PD00471 REMARK 280 AT 5 MG/ML, PUCK ZOT8-4, PH 7.7, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 300 REMARK 465 ALA A 301 REMARK 465 ALA A 302 REMARK 465 VAL A 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 23 CG CD CE NZ REMARK 470 GLU A 59 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 696 O HOH A 861 2.03 REMARK 500 O THR A 61 O HOH A 501 2.11 REMARK 500 O HOH A 648 O HOH A 843 2.11 REMARK 500 O HOH A 819 O HOH A 829 2.12 REMARK 500 O HOH A 539 O HOH A 551 2.13 REMARK 500 O HOH A 829 O HOH A 873 2.13 REMARK 500 O ARG A 168 O HOH A 502 2.16 REMARK 500 OD1 ASP A 277 O HOH A 503 2.17 REMARK 500 O HOH A 551 O HOH A 569 2.17 REMARK 500 O HOH A 511 O HOH A 665 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 551 O HOH A 795 1545 2.15 REMARK 500 O HOH A 535 O HOH A 809 1554 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 60 38.57 -140.23 REMARK 500 MET A 103 -125.79 60.01 REMARK 500 ASP A 159 88.19 -153.47 REMARK 500 THR A 169 87.07 -43.19 REMARK 500 GLN A 170 21.79 48.87 REMARK 500 SER A 178 -154.77 -110.39 REMARK 500 THR A 179 52.80 -102.20 REMARK 500 ASP A 232 41.47 -107.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 168 THR A 169 148.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 78 NE2 REMARK 620 2 HIS A 237 NE2 94.8 REMARK 620 3 ASP A 241 OD1 96.2 98.8 REMARK 620 4 HUM A 401 O28 127.1 87.6 135.8 REMARK 620 5 HUM A 401 O30 93.4 164.0 93.9 76.5 REMARK 620 6 JCG A 402 O28 127.9 92.0 133.5 4.6 72.2 REMARK 620 7 JCG A 402 O30 91.6 166.4 92.4 79.0 2.5 74.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 404 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 574 O REMARK 620 2 HOH A 589 O 84.3 REMARK 620 3 HOH A 680 O 89.2 77.0 REMARK 620 4 HOH A 700 O 175.3 96.7 86.5 REMARK 620 5 HOH A 855 O 96.2 73.6 149.3 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 405 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 518 O 84.5 REMARK 620 3 HOH A 603 O 99.9 77.1 REMARK 620 4 HOH A 820 O 88.4 85.5 159.8 REMARK 620 5 HOH A 837 O 178.0 93.9 78.6 92.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HUM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JCG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5UPG RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED TO INHIBITOR REMARK 900 RELATED ID: 5VWM RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED TO INHIBITOR REMARK 900 RELATED ID: 6CAX RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED TO INHIBITOR REMARK 900 RELATED ID: 6C9C RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED TO INHIBITOR REMARK 900 RELATED ID: 6DUI RELATED DB: PDB REMARK 900 CONTAINS THE SAME PROTEIN COMPLEXED TO INHIBITOR DBREF 6E54 A 1 303 UNP P47205 LPXC_PSEAE 1 303 SEQADV 6E54 SER A 0 UNP P47205 EXPRESSION TAG SEQRES 1 A 304 SER MET ILE LYS GLN ARG THR LEU LYS ASN ILE ILE ARG SEQRES 2 A 304 ALA THR GLY VAL GLY LEU HIS SER GLY GLU LYS VAL TYR SEQRES 3 A 304 LEU THR LEU LYS PRO ALA PRO VAL ASP THR GLY ILE VAL SEQRES 4 A 304 PHE CYS ARG THR ASP LEU ASP PRO VAL VAL GLU ILE PRO SEQRES 5 A 304 ALA ARG ALA GLU ASN VAL GLY GLU THR THR MET SER THR SEQRES 6 A 304 THR LEU VAL LYS GLY ASP VAL LYS VAL ASP THR VAL GLU SEQRES 7 A 304 HIS LEU LEU SER ALA MET ALA GLY LEU GLY ILE ASP ASN SEQRES 8 A 304 ALA TYR VAL GLU LEU SER ALA SER GLU VAL PRO ILE MET SEQRES 9 A 304 ASP GLY SER ALA GLY PRO PHE VAL PHE LEU ILE GLN SER SEQRES 10 A 304 ALA GLY LEU GLN GLU GLN GLU ALA ALA LYS LYS PHE ILE SEQRES 11 A 304 ARG ILE LYS ARG GLU VAL SER VAL GLU GLU GLY ASP LYS SEQRES 12 A 304 ARG ALA VAL PHE VAL PRO PHE ASP GLY PHE LYS VAL SER SEQRES 13 A 304 PHE GLU ILE ASP PHE ASP HIS PRO VAL PHE ARG GLY ARG SEQRES 14 A 304 THR GLN GLN ALA SER VAL ASP PHE SER SER THR SER PHE SEQRES 15 A 304 VAL LYS GLU VAL SER ARG ALA ARG THR PHE GLY PHE MET SEQRES 16 A 304 ARG ASP ILE GLU TYR LEU ARG SER GLN ASN LEU ALA LEU SEQRES 17 A 304 GLY GLY SER VAL GLU ASN ALA ILE VAL VAL ASP GLU ASN SEQRES 18 A 304 ARG VAL LEU ASN GLU ASP GLY LEU ARG TYR GLU ASP GLU SEQRES 19 A 304 PHE VAL LYS HIS LYS ILE LEU ASP ALA ILE GLY ASP LEU SEQRES 20 A 304 TYR LEU LEU GLY ASN SER LEU ILE GLY GLU PHE ARG GLY SEQRES 21 A 304 PHE LYS SER GLY HIS ALA LEU ASN ASN GLN LEU LEU ARG SEQRES 22 A 304 THR LEU ILE ALA ASP LYS ASP ALA TRP GLU VAL VAL THR SEQRES 23 A 304 PHE GLU ASP ALA ARG THR ALA PRO ILE SER TYR MET ARG SEQRES 24 A 304 PRO ALA ALA ALA VAL HET HUM A 401 34 HET JCG A 402 34 HET ZN A 403 1 HET CA A 404 1 HET CA A 405 1 HET CL A 406 1 HET CL A 407 1 HETNAM HUM (2S)-4-{4-[4-(BENZYLOXY)-2-FLUOROPHENYL]-2-OXOPYRIDIN- HETNAM 2 HUM 1(2H)-YL}-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL) HETNAM 3 HUM BUTANAMIDE HETNAM JCG (2R)-4-{4-[4-(BENZYLOXY)-2-FLUOROPHENYL]-2-OXOPYRIDIN- HETNAM 2 JCG 1(2H)-YL}-N-HYDROXY-2-METHYL-2-(METHYLSULFONYL) HETNAM 3 JCG BUTANAMIDE HETNAM ZN ZINC ION HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 2 HUM C24 H25 F N2 O6 S FORMUL 3 JCG C24 H25 F N2 O6 S FORMUL 4 ZN ZN 2+ FORMUL 5 CA 2(CA 2+) FORMUL 7 CL 2(CL 1-) FORMUL 9 HOH *390(H2 O) HELIX 1 AA1 ARG A 53 GLU A 55 5 3 HELIX 2 AA2 VAL A 76 GLY A 87 1 12 HELIX 3 AA3 ALA A 107 GLY A 118 1 12 HELIX 4 AA4 SER A 180 VAL A 185 1 6 HELIX 5 AA5 ASP A 196 GLN A 203 1 8 HELIX 6 AA6 ASP A 232 TYR A 247 1 16 HELIX 7 AA7 LEU A 248 GLY A 250 5 3 HELIX 8 AA8 GLY A 263 ASP A 277 1 15 HELIX 9 AA9 ASP A 288 ALA A 292 5 5 SHEET 1 AA1 2 LYS A 3 LEU A 7 0 SHEET 2 AA1 2 LEU A 119 ALA A 125 -1 O GLN A 122 N GLN A 4 SHEET 1 AA2 5 ILE A 11 VAL A 16 0 SHEET 2 AA2 5 LYS A 23 PRO A 30 -1 O LEU A 26 N ALA A 13 SHEET 3 AA2 5 ALA A 91 LEU A 95 -1 O GLU A 94 N THR A 27 SHEET 4 AA2 5 ILE A 37 ARG A 41 1 N VAL A 38 O VAL A 93 SHEET 5 AA2 5 VAL A 48 PRO A 51 -1 O ILE A 50 N PHE A 39 SHEET 1 AA3 3 VAL A 57 GLU A 59 0 SHEET 2 AA3 3 THR A 65 LYS A 68 -1 O THR A 65 N GLY A 58 SHEET 3 AA3 3 VAL A 71 VAL A 73 -1 O VAL A 73 N LEU A 66 SHEET 1 AA4 5 VAL A 135 GLU A 139 0 SHEET 2 AA4 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA4 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA4 5 PHE A 152 GLU A 157 1 N SER A 155 O PHE A 257 SHEET 5 AA4 5 GLN A 171 ASP A 175 -1 O VAL A 174 N VAL A 154 SHEET 1 AA5 5 VAL A 135 GLU A 139 0 SHEET 2 AA5 5 LYS A 142 VAL A 147 -1 O PHE A 146 N VAL A 135 SHEET 3 AA5 5 SER A 252 PHE A 260 -1 O PHE A 260 N ARG A 143 SHEET 4 AA5 5 PHE A 128 ILE A 131 1 N ILE A 129 O ILE A 254 SHEET 5 AA5 5 TRP A 281 VAL A 284 -1 O GLU A 282 N ARG A 130 SHEET 1 AA6 2 PHE A 191 PHE A 193 0 SHEET 2 AA6 2 ILE A 215 VAL A 217 1 O VAL A 217 N GLY A 192 LINK NE2 HIS A 78 ZN ZN A 403 1555 1555 2.02 LINK NE2 HIS A 237 ZN ZN A 403 1555 1555 2.06 LINK OD1 ASP A 241 ZN ZN A 403 1555 1555 1.96 LINK O28AHUM A 401 ZN ZN A 403 1555 1555 2.01 LINK O30AHUM A 401 ZN ZN A 403 1555 1555 2.27 LINK O28BJCG A 402 ZN ZN A 403 1555 1555 2.18 LINK O30BJCG A 402 ZN ZN A 403 1555 1555 2.13 LINK CA CA A 404 O HOH A 574 1555 1555 2.26 LINK CA CA A 404 O HOH A 589 1555 1555 2.39 LINK CA CA A 404 O HOH A 680 1555 1555 2.35 LINK CA CA A 404 O HOH A 700 1555 1565 2.20 LINK CA CA A 404 O HOH A 855 1555 1555 2.38 LINK CA CA A 405 O HOH A 516 1555 1556 2.24 LINK CA CA A 405 O HOH A 518 1555 1556 2.28 LINK CA CA A 405 O HOH A 603 1555 1555 2.57 LINK CA CA A 405 O HOH A 820 1555 1556 2.21 LINK CA CA A 405 O HOH A 837 1555 1455 2.29 CISPEP 1 ASP A 45 PRO A 46 0 -3.89 SITE 1 AC1 19 LEU A 18 MET A 62 GLU A 77 HIS A 78 SITE 2 AC1 19 THR A 190 PHE A 191 GLY A 192 PHE A 193 SITE 3 AC1 19 MET A 194 ILE A 197 GLY A 209 ALA A 214 SITE 4 AC1 19 HIS A 237 ASP A 241 HIS A 264 JCG A 402 SITE 5 AC1 19 ZN A 403 HOH A 517 HOH A 612 SITE 1 AC2 23 LEU A 18 HIS A 19 MET A 62 GLU A 77 SITE 2 AC2 23 HIS A 78 THR A 190 PHE A 191 GLY A 192 SITE 3 AC2 23 PHE A 193 MET A 194 ILE A 197 LEU A 200 SITE 4 AC2 23 VAL A 216 HIS A 237 LYS A 238 ASP A 241 SITE 5 AC2 23 HIS A 264 HUM A 401 ZN A 403 HOH A 610 SITE 6 AC2 23 HOH A 612 HOH A 663 HOH A 678 SITE 1 AC3 5 HIS A 78 HIS A 237 ASP A 241 HUM A 401 SITE 2 AC3 5 JCG A 402 SITE 1 AC4 5 HOH A 574 HOH A 589 HOH A 680 HOH A 700 SITE 2 AC4 5 HOH A 855 SITE 1 AC5 5 HOH A 516 HOH A 518 HOH A 603 HOH A 820 SITE 2 AC5 5 HOH A 837 SITE 1 AC6 3 GLY A 263 LEU A 266 HOH A 861 SITE 1 AC7 3 ARG A 41 VAL A 71 LYS A 72 CRYST1 35.640 47.740 48.350 111.68 107.87 99.27 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028058 0.004579 0.012386 0.00000 SCALE2 0.000000 0.021224 0.010573 0.00000 SCALE3 0.000000 0.000000 0.024278 0.00000