HEADER RNA 31-JUL-18 6E8T TITLE STRUCTURE OF THE MANGO-III (A10U) APTAMER BOUND TO TO1-BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (35-MER); COMPND 3 CHAIN: D, C, B, A; COMPND 4 SYNONYM: MANGO-III (A10U) APTAMER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC KEYWDS APTAMER, FLUORESCENCE, RNA, G-QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 3 11-OCT-23 6E8T 1 LINK REVDAT 2 24-APR-19 6E8T 1 JRNL REVDAT 1 17-APR-19 6E8T 0 JRNL AUTH R.J.TRACHMAN 3RD.,A.AUTOUR,S.C.Y.JENG,A.ABDOLAHZADEH, JRNL AUTH 2 A.ANDREONI,R.COJOCARU,R.GARIPOV,E.V.DOLGOSHEINA,J.R.KNUTSON, JRNL AUTH 3 M.RYCKELYNCK,P.J.UNRAU,A.R.FERRE-D'AMARE JRNL TITL STRUCTURE AND FUNCTIONAL RESELECTION OF THE MANGO-III JRNL TITL 2 FLUOROGENIC RNA APTAMER. JRNL REF NAT. CHEM. BIOL. V. 15 472 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 30992561 JRNL DOI 10.1038/S41589-019-0267-9 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.7 REMARK 3 NUMBER OF REFLECTIONS : 18895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9800 - 6.8100 0.86 1350 154 0.1297 0.1480 REMARK 3 2 6.8100 - 5.4100 0.84 1306 142 0.1452 0.1801 REMARK 3 3 5.4100 - 4.7300 0.88 1402 140 0.1497 0.2149 REMARK 3 4 4.7300 - 4.3000 0.81 1258 135 0.1691 0.2079 REMARK 3 5 4.3000 - 3.9900 0.86 1341 153 0.1969 0.2525 REMARK 3 6 3.9900 - 3.7500 0.86 1377 150 0.2311 0.3175 REMARK 3 7 3.7500 - 3.5700 0.84 1322 156 0.2402 0.2923 REMARK 3 8 3.5700 - 3.4100 0.82 1255 138 0.2455 0.2830 REMARK 3 9 3.4100 - 3.2800 0.78 1212 132 0.2430 0.2717 REMARK 3 10 3.2800 - 3.1700 0.83 1301 132 0.2845 0.3107 REMARK 3 11 3.1700 - 3.0700 0.84 1323 152 0.3382 0.3901 REMARK 3 12 3.0700 - 2.9800 0.85 1340 150 0.3903 0.4520 REMARK 3 13 2.9800 - 2.9000 0.80 1235 139 0.4506 0.4968 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.591 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.237 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 77.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 78.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3537 REMARK 3 ANGLE : 1.370 5494 REMARK 3 CHIRALITY : 0.058 710 REMARK 3 PLANARITY : 0.007 155 REMARK 3 DIHEDRAL : 19.521 1711 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E8T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235918. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.105 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18895 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6E8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM CITRATE, 3.0% GLYCEROL, REMARK 280 4% ACETONE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.97250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.54224 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 53.89700 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 45.97250 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 26.54224 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.89700 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 45.97250 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 26.54224 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.89700 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.08447 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 107.79400 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 53.08447 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 107.79400 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 53.08447 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 107.79400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA C 103 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 202 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 A D 11 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G C 1 O5' C5' REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 U D 21 C01 HZG D 101 1.38 REMARK 500 O2' U D 19 OP2 U A 15 1.99 REMARK 500 O2' U C 14 OP2 U B 21 2.12 REMARK 500 O2' G B 18 OP2 A B 20 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G D 22 N3 - C4 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 U D 26 O4' - C1' - N1 ANGL. DEV. = 5.1 DEGREES REMARK 500 G C 8 O4' - C1' - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 A C 10 C2 - N3 - C4 ANGL. DEV. = 4.2 DEGREES REMARK 500 A C 10 C5 - C6 - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 A C 10 N1 - C6 - N6 ANGL. DEV. = -4.1 DEGREES REMARK 500 U C 14 C2 - N1 - C1' ANGL. DEV. = 7.4 DEGREES REMARK 500 G B 33 C8 - N9 - C4 ANGL. DEV. = 2.7 DEGREES REMARK 500 A A 10 C5 - N7 - C8 ANGL. DEV. = -4.3 DEGREES REMARK 500 A A 10 N7 - C8 - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 A A 10 C8 - N9 - C4 ANGL. DEV. = -3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K D 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G D 8 O6 REMARK 620 2 G D 9 O6 80.4 REMARK 620 3 G D 12 O6 62.9 79.9 REMARK 620 4 G D 13 O6 130.0 61.9 78.3 REMARK 620 5 G D 17 O6 109.7 156.5 86.0 97.0 REMARK 620 6 G D 18 O6 154.6 115.3 136.6 75.2 64.1 REMARK 620 7 G D 22 O6 96.7 87.4 157.4 112.0 111.5 65.9 REMARK 620 8 G D 24 O6 79.8 138.8 120.9 150.1 64.6 75.5 59.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C C 4 O3' REMARK 620 2 C C 4 O2' 54.7 REMARK 620 3 C C 4 O3' 0.0 54.7 REMARK 620 4 C C 4 O2' 54.7 0.0 54.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K C 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G C 8 O6 REMARK 620 2 G C 9 O6 76.4 REMARK 620 3 G C 12 O6 67.7 72.4 REMARK 620 4 G C 13 O6 138.9 69.3 80.6 REMARK 620 5 G C 17 O6 108.6 151.6 83.6 92.4 REMARK 620 6 G C 18 O6 148.4 120.0 140.5 71.5 70.7 REMARK 620 7 G C 22 O6 80.8 89.3 146.3 119.8 119.0 73.1 REMARK 620 8 G C 24 O6 64.5 133.5 111.6 155.8 69.2 87.2 61.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 8 O6 REMARK 620 2 G B 9 O6 78.2 REMARK 620 3 G B 12 O6 76.2 83.5 REMARK 620 4 G B 13 O6 143.0 72.9 77.9 REMARK 620 5 G B 17 O6 114.9 154.6 79.2 85.4 REMARK 620 6 G B 18 O6 154.2 107.8 128.8 59.9 70.4 REMARK 620 7 G B 22 O6 87.2 68.6 150.0 103.0 130.7 72.6 REMARK 620 8 G B 24 O6 81.9 133.4 131.4 135.1 71.6 76.0 68.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 102 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 8 O6 REMARK 620 2 G A 9 O6 75.8 REMARK 620 3 G A 12 O6 67.6 96.3 REMARK 620 4 G A 13 O6 132.4 79.4 75.7 REMARK 620 5 G A 17 O6 103.2 172.6 76.7 96.4 REMARK 620 6 G A 18 O6 143.5 119.3 134.9 84.1 65.9 REMARK 620 7 G A 22 O6 89.1 67.1 154.5 117.3 120.3 70.3 REMARK 620 8 G A 24 O6 70.3 122.1 111.5 154.8 63.6 73.9 66.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HZG D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K D 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HZG C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K C 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA C 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HZG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HZG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 102 DBREF 6E8T D 1 36 PDB 6E8T 6E8T 1 36 DBREF 6E8T C 1 36 PDB 6E8T 6E8T 1 36 DBREF 6E8T B 1 36 PDB 6E8T 6E8T 1 36 DBREF 6E8T A 1 36 PDB 6E8T 6E8T 1 36 SEQRES 1 D 36 G U A C G A A G G A A G G SEQRES 2 D 36 U U U G G U A U G U G G U SEQRES 3 D 36 A U A U U C G U A C SEQRES 1 C 36 G U A C G A A G G A A G G SEQRES 2 C 36 U U U G G U A U G U G G U SEQRES 3 C 36 A U A U U C G U A C SEQRES 1 B 36 G U A C G A A G G A A G G SEQRES 2 B 36 U U U G G U A U G U G G U SEQRES 3 B 36 A U A U U C G U A C SEQRES 1 A 36 G U A C G A A G G A A G G SEQRES 2 A 36 U U U G G U A U G U G G U SEQRES 3 A 36 A U A U U C G U A C HET HZG D 101 25 HET K D 102 1 HET HZG C 101 25 HET K C 102 1 HET NA C 103 1 HET HZG B 101 25 HET K B 102 1 HET HZG A 101 25 HET K A 102 1 HETNAM HZG 1-METHYL-4-{[3-(2-OXOPROPYL)-1,3-BENZOTHIAZOL-3-IUM-2- HETNAM 2 HZG YL]METHYL}QUINOLIN-1-IUM HETNAM K POTASSIUM ION HETNAM NA SODIUM ION FORMUL 5 HZG 4(C21 H20 N2 O S 2+) FORMUL 6 K 4(K 1+) FORMUL 9 NA NA 1+ FORMUL 14 HOH *4(H2 O) LINK O6 G D 8 K K D 102 1555 1555 2.87 LINK O6 G D 9 K K D 102 1555 1555 2.79 LINK O6 G D 12 K K D 102 1555 1555 2.73 LINK O6 G D 13 K K D 102 1555 1555 2.88 LINK O6 G D 17 K K D 102 1555 1555 2.67 LINK O6 G D 18 K K D 102 1555 1555 2.80 LINK O6 G D 22 K K D 102 1555 1555 2.87 LINK O6 G D 24 K K D 102 1555 1555 2.84 LINK O3' C C 4 NA NA C 103 1555 1555 3.11 LINK O2' C C 4 NA NA C 103 1555 1555 2.75 LINK O3' C C 4 NA NA C 103 1555 2665 3.11 LINK O2' C C 4 NA NA C 103 1555 2665 2.75 LINK O6 G C 8 K K C 102 1555 1555 2.77 LINK O6 G C 9 K K C 102 1555 1555 2.69 LINK O6 G C 12 K K C 102 1555 1555 2.95 LINK O6 G C 13 K K C 102 1555 1555 2.65 LINK O6 G C 17 K K C 102 1555 1555 2.60 LINK O6 G C 18 K K C 102 1555 1555 2.64 LINK O6 G C 22 K K C 102 1555 1555 2.78 LINK O6 G C 24 K K C 102 1555 1555 2.72 LINK O6 G B 8 K K B 102 1555 1555 2.56 LINK O6 G B 9 K K B 102 1555 1555 2.80 LINK O6 G B 12 K K B 102 1555 1555 2.67 LINK O6 G B 13 K K B 102 1555 1555 2.70 LINK O6 G B 17 K K B 102 1555 1555 2.98 LINK O6 G B 18 K K B 102 1555 1555 2.78 LINK O6 G B 22 K K B 102 1555 1555 2.70 LINK O6 G B 24 K K B 102 1555 1555 2.69 LINK O6 G A 8 K K A 102 1555 1555 2.59 LINK O6 G A 9 K K A 102 1555 1555 2.69 LINK O6 G A 12 K K A 102 1555 1555 2.67 LINK O6 G A 13 K K A 102 1555 1555 2.83 LINK O6 G A 17 K K A 102 1555 1555 2.62 LINK O6 G A 18 K K A 102 1555 1555 2.89 LINK O6 G A 22 K K A 102 1555 1555 2.69 LINK O6 G A 24 K K A 102 1555 1555 2.87 SITE 1 AC1 8 G D 9 G D 13 U D 14 U D 16 SITE 2 AC1 8 G D 18 A D 20 U D 21 G D 22 SITE 1 AC2 8 G D 8 G D 9 G D 12 G D 13 SITE 2 AC2 8 G D 17 G D 18 G D 22 G D 24 SITE 1 AC3 7 G C 9 G C 13 U C 14 U C 16 SITE 2 AC3 7 G C 18 U C 21 G C 22 SITE 1 AC4 8 G C 8 G C 9 G C 12 G C 13 SITE 2 AC4 8 G C 17 G C 18 G C 22 G C 24 SITE 1 AC5 2 C C 4 G C 5 SITE 1 AC6 7 G B 9 G B 13 U B 14 U B 16 SITE 2 AC6 7 G B 18 U B 21 G B 22 SITE 1 AC7 8 G B 8 G B 9 G B 12 G B 13 SITE 2 AC7 8 G B 17 G B 18 G B 22 G B 24 SITE 1 AC8 8 G A 9 G A 13 U A 14 U A 16 SITE 2 AC8 8 G A 18 A A 20 U A 21 G A 22 SITE 1 AC9 8 G A 8 G A 9 G A 12 G A 13 SITE 2 AC9 8 G A 17 G A 18 G A 22 G A 24 CRYST1 91.945 91.945 161.691 90.00 90.00 120.00 H 3 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010876 0.006279 0.000000 0.00000 SCALE2 0.000000 0.012559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006185 0.00000