HEADER RNA 31-JUL-18 6E8U TITLE STRUCTURE OF THE MANGO-III (A10U) APTAMER BOUND TO TO1-BIOTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (37-MER); COMPND 3 CHAIN: B; COMPND 4 SYNONYM: MANGO-III (A10U) APTAMER; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: SYNTHETIC KEYWDS APTAMER, FLUORESCENCE, RNA, G-QUADRUPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.J.TRACHMAN,A.R.FERRE-D'AMARE REVDAT 3 11-OCT-23 6E8U 1 LINK REVDAT 2 24-APR-19 6E8U 1 JRNL REVDAT 1 17-APR-19 6E8U 0 JRNL AUTH R.J.TRACHMAN 3RD.,A.AUTOUR,S.C.Y.JENG,A.ABDOLAHZADEH, JRNL AUTH 2 A.ANDREONI,R.COJOCARU,R.GARIPOV,E.V.DOLGOSHEINA,J.R.KNUTSON, JRNL AUTH 3 M.RYCKELYNCK,P.J.UNRAU,A.R.FERRE-D'AMARE JRNL TITL STRUCTURE AND FUNCTIONAL RESELECTION OF THE MANGO-III JRNL TITL 2 FLUOROGENIC RNA APTAMER. JRNL REF NAT. CHEM. BIOL. V. 15 472 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 30992561 JRNL DOI 10.1038/S41589-019-0267-9 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.59 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 3 NUMBER OF REFLECTIONS : 20010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.280 REMARK 3 FREE R VALUE TEST SET COUNT : 1856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.6000 - 3.6400 0.99 1548 158 0.1446 0.1589 REMARK 3 2 3.6400 - 2.8900 1.00 1445 148 0.1532 0.2059 REMARK 3 3 2.8900 - 2.5300 1.00 1421 145 0.2106 0.2160 REMARK 3 4 2.5300 - 2.3000 0.99 1407 144 0.2130 0.2497 REMARK 3 5 2.3000 - 2.1300 0.99 1395 143 0.2046 0.2802 REMARK 3 6 2.1300 - 2.0100 0.99 1399 143 0.1985 0.2267 REMARK 3 7 2.0100 - 1.9100 0.99 1381 141 0.1993 0.2044 REMARK 3 8 1.9100 - 1.8200 0.99 1383 141 0.1919 0.2398 REMARK 3 9 1.8200 - 1.7500 0.98 1354 139 0.1944 0.2201 REMARK 3 10 1.7500 - 1.6900 0.98 1372 140 0.2073 0.2391 REMARK 3 11 1.6900 - 1.6400 0.98 1337 137 0.2168 0.2406 REMARK 3 12 1.6400 - 1.5900 0.98 1364 140 0.2208 0.2176 REMARK 3 13 1.5900 - 1.5500 0.97 1348 137 0.2515 0.2999 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.154 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 967 REMARK 3 ANGLE : 1.123 1499 REMARK 3 CHIRALITY : 0.047 190 REMARK 3 PLANARITY : 0.011 42 REMARK 3 DIHEDRAL : 22.035 470 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-18. REMARK 100 THE DEPOSITION ID IS D_1000235919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20010 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.510 REMARK 200 RESOLUTION RANGE LOW (A) : 40.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.20 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 1.00000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6E8S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NACACODYLATE PH 7.1, PEG3350 REMARK 280 16%, 0.25 M MAGNESIUM ACETATE, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 26.63500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 94.01800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.00900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 141.02700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 141.02700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 26.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 47.00900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 94.01800 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 94.01800 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 26.63500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 141.02700 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 47.00900 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 26.63500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 47.00900 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 141.02700 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 26.63500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 26.63500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 94.01800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 105 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 324 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 329 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 340 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B 1 O5' C5' REMARK 470 U B 26 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U B 26 C6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' U B 19 O HOH B 201 2.03 REMARK 500 O HOH B 220 O HOH B 332 2.04 REMARK 500 O HOH B 213 O HOH B 322 2.06 REMARK 500 O HOH B 322 O HOH B 330 2.09 REMARK 500 O HOH B 205 O HOH B 333 2.09 REMARK 500 O HOH B 330 O HOH B 338 2.12 REMARK 500 O HOH B 213 O HOH B 335 2.14 REMARK 500 O HOH B 206 O HOH B 335 2.16 REMARK 500 OP2 G B 13 O HOH B 202 2.16 REMARK 500 O HOH B 309 O HOH B 330 2.17 REMARK 500 O HOH B 335 O HOH B 338 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O4' U B 15 O HOH B 201 5554 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 109 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 8 O6 REMARK 620 2 G B 9 O6 75.9 REMARK 620 3 G B 12 O6 71.8 85.1 REMARK 620 4 G B 13 O6 133.1 70.4 73.7 REMARK 620 5 G B 17 O6 115.5 152.0 75.5 84.7 REMARK 620 6 G B 18 O6 152.7 114.7 131.9 73.2 67.7 REMARK 620 7 G B 22 O6 85.4 73.4 152.0 113.9 130.6 74.6 REMARK 620 8 G B 24 O6 73.6 131.9 118.5 152.6 75.9 81.6 67.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 107 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 14 OP1 REMARK 620 2 U B 15 OP1 90.0 REMARK 620 3 HOH B 276 O 71.9 157.7 REMARK 620 4 HOH B 303 O 85.2 85.8 105.1 REMARK 620 5 HOH B 314 O 94.0 91.7 77.0 177.3 REMARK 620 6 HOH B 315 O 175.3 93.1 105.7 91.5 89.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 105 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U B 19 OP1 REMARK 620 2 U B 19 OP1 0.0 REMARK 620 3 HOH B 249 O 85.2 85.2 REMARK 620 4 HOH B 249 O 93.9 93.9 98.9 REMARK 620 5 HOH B 260 O 88.2 88.2 88.6 172.3 REMARK 620 6 HOH B 260 O 92.9 92.9 172.3 88.6 83.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 101 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 25 OP1 REMARK 620 2 HOH B 223 O 100.5 REMARK 620 3 HOH B 227 O 78.6 166.8 REMARK 620 4 HOH B 267 O 94.9 84.9 82.1 REMARK 620 5 HOH B 292 O 170.6 88.8 92.8 87.6 REMARK 620 6 HOH B 307 O 92.8 80.8 112.4 164.8 86.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G B 28 OP2 REMARK 620 2 U B 29 O4 91.5 REMARK 620 3 HOH B 275 O 88.3 86.0 REMARK 620 4 HOH B 293 O 171.8 82.9 85.4 REMARK 620 5 HOH B 294 O 91.3 87.7 173.7 94.4 REMARK 620 6 HOH B 312 O 98.5 166.3 85.0 86.1 101.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 103 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 211 O REMARK 620 2 HOH B 226 O 90.7 REMARK 620 3 HOH B 250 O 89.3 176.8 REMARK 620 4 HOH B 272 O 92.9 88.8 94.4 REMARK 620 5 HOH B 299 O 90.2 90.9 85.9 176.9 REMARK 620 6 HOH B 327 O 170.6 80.2 99.6 89.2 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 104 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 210 O REMARK 620 2 HOH B 232 O 93.5 REMARK 620 3 HOH B 258 O 87.0 90.4 REMARK 620 4 HOH B 274 O 87.7 89.9 174.7 REMARK 620 5 HOH B 339 O 175.1 91.3 93.9 91.3 REMARK 620 6 HOH B 342 O 84.4 173.4 83.3 96.2 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 108 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 218 O REMARK 620 2 HOH B 236 O 91.2 REMARK 620 3 HOH B 320 O 104.6 78.8 REMARK 620 4 HOH B 325 O 74.9 81.2 159.9 REMARK 620 5 HOH B 341 O 108.7 155.6 82.5 117.0 REMARK 620 6 HOH B 343 O 169.5 79.4 78.3 98.9 81.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HZD B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 109 DBREF 6E8U B 1 37 PDB 6E8U 6E8U 1 37 SEQRES 1 B 37 G U A C G A A G G A A G G SEQRES 2 B 37 U U U G G U A U G G G G U SEQRES 3 B 37 A G U U G U C G U A C HET MG B 101 1 HET MG B 102 1 HET MG B 103 1 HET MG B 104 1 HET MG B 105 1 HET HZD B 106 52 HET NA B 107 1 HET NA B 108 1 HET K B 109 1 HETNAM MG MAGNESIUM ION HETNAM HZD 4-[(3-{2,16-DIOXO-20-[(3AR,4R,6AS)-2-OXOHEXAHYDRO-1H- HETNAM 2 HZD THIENO[3,4-D]IMIDAZOL-4-YL]-6,9,12-TRIOXA-3,15- HETNAM 3 HZD DIAZAICOSAN-1-YL}-1,3-BENZOTHIAZOL-3-IUM-2-YL)METHYL]- HETNAM 4 HZD 1-METHYLQUINOLIN-1-IUM HETNAM NA SODIUM ION HETNAM K POTASSIUM ION FORMUL 2 MG 5(MG 2+) FORMUL 7 HZD C38 H50 N6 O6 S2 2+ FORMUL 8 NA 2(NA 1+) FORMUL 10 K K 1+ FORMUL 11 HOH *143(H2 O) LINK O6 G B 8 K K B 109 1555 1555 2.80 LINK O6 G B 9 K K B 109 1555 1555 2.77 LINK O6 G B 12 K K B 109 1555 1555 2.73 LINK O6 G B 13 K K B 109 1555 1555 2.80 LINK OP1 U B 14 NA NA B 107 1555 1555 2.21 LINK OP1 U B 15 NA NA B 107 1555 1555 2.21 LINK O6 G B 17 K K B 109 1555 1555 2.75 LINK O6 G B 18 K K B 109 1555 1555 2.71 LINK OP1 U B 19 MG MG B 105 1555 1555 2.03 LINK OP1 U B 19 MG MG B 105 1555 10555 2.03 LINK O6 G B 22 K K B 109 1555 1555 2.74 LINK O6 G B 24 K K B 109 1555 1555 2.76 LINK OP1 G B 25 MG MG B 101 1555 1555 2.21 LINK OP2 G B 28 MG MG B 102 1555 1555 2.03 LINK O4 U B 29 MG MG B 102 1555 1555 2.20 LINK MG MG B 101 O HOH B 223 1555 1555 2.21 LINK MG MG B 101 O HOH B 227 1555 1555 1.87 LINK MG MG B 101 O HOH B 267 1555 1555 2.03 LINK MG MG B 101 O HOH B 292 1555 1555 2.25 LINK MG MG B 101 O HOH B 307 1555 1555 1.99 LINK MG MG B 102 O HOH B 275 1555 1555 2.00 LINK MG MG B 102 O HOH B 293 1555 1555 2.17 LINK MG MG B 102 O HOH B 294 1555 1555 2.04 LINK MG MG B 102 O HOH B 312 1555 1555 2.11 LINK MG MG B 103 O HOH B 211 1555 1555 2.05 LINK MG MG B 103 O HOH B 226 1555 1555 2.15 LINK MG MG B 103 O HOH B 250 1555 1555 2.03 LINK MG MG B 103 O HOH B 272 1555 1555 2.09 LINK MG MG B 103 O HOH B 299 1555 1555 2.13 LINK MG MG B 103 O HOH B 327 1555 1555 2.02 LINK MG MG B 104 O HOH B 210 1555 1555 2.10 LINK MG MG B 104 O HOH B 232 1555 1555 2.12 LINK MG MG B 104 O HOH B 258 1555 1555 2.11 LINK MG MG B 104 O HOH B 274 1555 1555 2.23 LINK MG MG B 104 O HOH B 339 1555 1555 2.07 LINK MG MG B 104 O HOH B 342 1555 1555 2.21 LINK MG MG B 105 O HOH B 249 1555 1555 2.06 LINK MG MG B 105 O HOH B 249 1555 10555 2.06 LINK MG MG B 105 O HOH B 260 1555 1555 2.14 LINK MG MG B 105 O HOH B 260 1555 10555 2.14 LINK NA NA B 107 O HOH B 276 1555 1555 2.55 LINK NA NA B 107 O HOH B 303 1555 1555 2.22 LINK NA NA B 107 O HOH B 314 1555 1555 2.23 LINK NA NA B 107 O HOH B 315 1555 1555 2.19 LINK NA NA B 108 O HOH B 218 1555 1555 2.29 LINK NA NA B 108 O HOH B 236 1555 1555 2.39 LINK NA NA B 108 O HOH B 320 1555 1555 2.32 LINK NA NA B 108 O HOH B 325 1555 1555 2.33 LINK NA NA B 108 O HOH B 341 1555 1555 2.39 LINK NA NA B 108 O HOH B 343 1555 1555 2.40 SITE 1 AC1 6 G B 25 HOH B 223 HOH B 227 HOH B 267 SITE 2 AC1 6 HOH B 292 HOH B 307 SITE 1 AC2 6 G B 28 U B 29 HOH B 275 HOH B 293 SITE 2 AC2 6 HOH B 294 HOH B 312 SITE 1 AC3 6 HOH B 211 HOH B 226 HOH B 250 HOH B 272 SITE 2 AC3 6 HOH B 299 HOH B 327 SITE 1 AC4 6 HOH B 210 HOH B 232 HOH B 258 HOH B 274 SITE 2 AC4 6 HOH B 339 HOH B 342 SITE 1 AC5 3 U B 19 HOH B 249 HOH B 260 SITE 1 AC6 17 G B 9 G B 13 U B 14 U B 15 SITE 2 AC6 17 U B 16 G B 18 U B 19 A B 20 SITE 3 AC6 17 U B 21 G B 22 A B 27 HOH B 201 SITE 4 AC6 17 HOH B 217 HOH B 228 HOH B 241 HOH B 279 SITE 5 AC6 17 HOH B 309 SITE 1 AC7 6 U B 14 U B 15 HOH B 276 HOH B 303 SITE 2 AC7 6 HOH B 314 HOH B 315 SITE 1 AC8 6 HOH B 218 HOH B 236 HOH B 320 HOH B 325 SITE 2 AC8 6 HOH B 341 HOH B 343 SITE 1 AC9 8 G B 8 G B 9 G B 12 G B 13 SITE 2 AC9 8 G B 17 G B 18 G B 22 G B 24 CRYST1 53.270 53.270 188.036 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018772 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005318 0.00000