HEADER DNA BINDING PROTEIN/DNA 31-JUL-18 6E93 TITLE CRYSTAL STRUCTURE OF ZBTB38 C-TERMINAL ZINC FINGERS 6-9 IN COMPLEX TITLE 2 WITH METHYLATED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 38; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (5'-D(*GP*TP*CP*TP*GP*(DCM)P*GP*CP*(DCM) COMPND 7 P*GP*AP*TP*GP*AP*GP*TP*GP*C)-3'); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(*GP*CP*AP*CP*TP*CP*AP*TP*(DCM)P*GP*GP*(DCM) COMPND 12 P*GP*CP*AP*GP*AP*C)-3'); COMPND 13 CHAIN: D; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ZBTB38; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET-21D; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS ZBTB38 METHYLATED DNA ZINC FINGER, DNA BINDING PROTEIN, DNA BINDING KEYWDS 2 PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.O.HUDSON,F.G.WHITBY,B.A.BUCK-KOEHNTOP REVDAT 4 13-MAR-24 6E93 1 REMARK REVDAT 3 27-NOV-19 6E93 1 REMARK REVDAT 2 02-JAN-19 6E93 1 JRNL REVDAT 1 07-NOV-18 6E93 0 JRNL AUTH N.O.HUDSON,F.G.WHITBY,B.A.BUCK-KOEHNTOP JRNL TITL STRUCTURAL INSIGHTS INTO METHYLATED DNA RECOGNITION BY THE JRNL TITL 2 C-TERMINAL ZINC FINGERS OF THE DNA READER PROTEIN ZBTB38. JRNL REF J. BIOL. CHEM. V. 293 19835 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30355731 JRNL DOI 10.1074/JBC.RA118.005147 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 29043 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.5372 - 4.8039 0.99 1328 145 0.1330 0.1443 REMARK 3 2 4.8039 - 3.8199 1.00 1295 142 0.1418 0.1441 REMARK 3 3 3.8199 - 3.3391 1.00 1263 143 0.1561 0.1784 REMARK 3 4 3.3391 - 3.0347 0.99 1250 142 0.1912 0.2239 REMARK 3 5 3.0347 - 2.8177 1.00 1253 137 0.2079 0.2531 REMARK 3 6 2.8177 - 2.6519 1.00 1244 138 0.2126 0.2500 REMARK 3 7 2.6519 - 2.5193 1.00 1247 140 0.2073 0.2428 REMARK 3 8 2.5193 - 2.4098 1.00 1243 139 0.2013 0.2309 REMARK 3 9 2.4098 - 2.3171 0.99 1251 140 0.2033 0.2336 REMARK 3 10 2.3171 - 2.2372 1.00 1243 135 0.2107 0.2721 REMARK 3 11 2.2372 - 2.1673 1.00 1227 138 0.2032 0.2372 REMARK 3 12 2.1673 - 2.1054 1.00 1242 136 0.2086 0.2630 REMARK 3 13 2.1054 - 2.0501 1.00 1240 140 0.2089 0.2392 REMARK 3 14 2.0501 - 2.0001 1.00 1235 137 0.2224 0.2795 REMARK 3 15 2.0001 - 1.9546 1.00 1236 138 0.2164 0.2656 REMARK 3 16 1.9546 - 1.9131 1.00 1240 138 0.2600 0.2802 REMARK 3 17 1.9131 - 1.8748 1.00 1205 134 0.2763 0.2827 REMARK 3 18 1.8748 - 1.8395 1.00 1262 141 0.2701 0.3153 REMARK 3 19 1.8395 - 1.8066 1.00 1206 135 0.2588 0.2805 REMARK 3 20 1.8066 - 1.7760 1.00 1241 138 0.2560 0.3007 REMARK 3 21 1.7760 - 1.7474 0.96 1185 131 0.2858 0.3193 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1791 REMARK 3 ANGLE : 1.052 2561 REMARK 3 CHIRALITY : 0.050 267 REMARK 3 PLANARITY : 0.005 202 REMARK 3 DIHEDRAL : 23.249 913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -12.5131 -20.1914 -14.0363 REMARK 3 T TENSOR REMARK 3 T11: 0.1977 T22: 0.1828 REMARK 3 T33: 0.1983 T12: -0.0311 REMARK 3 T13: 0.0153 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.7199 L22: 0.6941 REMARK 3 L33: 1.4430 L12: -0.1878 REMARK 3 L13: 0.6249 L23: 0.0060 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.0369 S13: 0.0052 REMARK 3 S21: -0.0124 S22: -0.0028 S23: -0.0391 REMARK 3 S31: -0.0130 S32: 0.0522 S33: 0.0806 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6E93 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000235906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 277.15 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29108 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.747 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.25M AMMONIUM CHLORIDE 0.1 MMES REMARK 280 (PH:5.8) 20% PEG 6000, PH 5.8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.87800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.87800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.63500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.63500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.87800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.63500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.87800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 35.40200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 38.63500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 117 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 129 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 1006 REMARK 465 SER A 1007 REMARK 465 ARG A 1008 REMARK 465 ASN A 1121 REMARK 465 GLY A 1122 REMARK 465 LYS A 1123 REMARK 465 GLY A 1124 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 26 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1016 -11.12 73.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1204 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1012 SG REMARK 620 2 CYS A1015 SG 118.1 REMARK 620 3 HIS A1028 NE2 109.6 98.3 REMARK 620 4 HIS A1032 NE2 111.3 110.9 107.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1202 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1040 SG REMARK 620 2 CYS A1043 SG 116.9 REMARK 620 3 HIS A1056 NE2 111.7 104.2 REMARK 620 4 HIS A1060 NE2 104.1 116.3 102.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1068 SG REMARK 620 2 CYS A1071 SG 116.0 REMARK 620 3 HIS A1084 NE2 107.4 108.4 REMARK 620 4 HIS A1088 NE2 104.9 116.3 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1203 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1096 SG REMARK 620 2 CYS A1099 SG 120.7 REMARK 620 3 HIS A1112 NE2 104.7 107.6 REMARK 620 4 HIS A1116 NE2 106.7 116.2 97.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1204 DBREF 6E93 A 1006 1124 UNP Q8NAP3 ZBT38_HUMAN 1006 1124 DBREF 6E93 C 19 36 PDB 6E93 6E93 19 36 DBREF 6E93 D 1 18 PDB 6E93 6E93 1 18 SEQRES 1 A 119 THR SER ARG PRO TYR ALA CYS GLU LEU CYS ALA LYS GLN SEQRES 2 A 119 PHE GLN SER PRO SER THR LEU LYS MET HIS MET ARG CYS SEQRES 3 A 119 HIS THR GLY GLU LYS PRO TYR GLN CYS LYS THR CYS GLY SEQRES 4 A 119 ARG CYS PHE SER VAL GLN GLY ASN LEU GLN LYS HIS GLU SEQRES 5 A 119 ARG ILE HIS LEU GLY LEU LYS GLU PHE VAL CYS GLN TYR SEQRES 6 A 119 CYS ASN LYS ALA PHE THR LEU ASN GLU THR LEU LYS ILE SEQRES 7 A 119 HIS GLU ARG ILE HIS THR GLY GLU LYS ARG TYR HIS CYS SEQRES 8 A 119 GLN PHE CYS PHE GLN ARG PHE LEU TYR LEU SER THR LYS SEQRES 9 A 119 ARG ASN HIS GLU GLN ARG HIS ILE ARG GLU HIS ASN GLY SEQRES 10 A 119 LYS GLY SEQRES 1 C 18 DG DT DC DT DG 5CM DG DC 5CM DG DA DT DG SEQRES 2 C 18 DA DG DT DG DC SEQRES 1 D 18 DG DC DA DC DT DC DA DT 5CM DG DG 5CM DG SEQRES 2 D 18 DC DA DG DA DC HET 5CM C 24 33 HET 5CM C 27 33 HET 5CM D 9 33 HET 5CM D 12 33 HET ZN A1201 1 HET ZN A1202 1 HET ZN A1203 1 HET ZN A1204 1 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION FORMUL 2 5CM 4(C10 H16 N3 O7 P) FORMUL 4 ZN 4(ZN 2+) FORMUL 8 HOH *152(H2 O) HELIX 1 AA1 SER A 1021 GLY A 1034 1 14 HELIX 2 AA2 VAL A 1049 GLY A 1062 1 14 HELIX 3 AA3 LEU A 1077 GLY A 1090 1 14 HELIX 4 AA4 TYR A 1105 GLU A 1119 1 15 SHEET 1 AA1 2 TYR A1010 ALA A1011 0 SHEET 2 AA1 2 GLN A1018 PHE A1019 -1 O PHE A1019 N TYR A1010 SHEET 1 AA2 2 TYR A1038 GLN A1039 0 SHEET 2 AA2 2 CYS A1046 PHE A1047 -1 O PHE A1047 N TYR A1038 SHEET 1 AA3 2 PHE A1066 VAL A1067 0 SHEET 2 AA3 2 ALA A1074 PHE A1075 -1 O PHE A1075 N PHE A1066 SHEET 1 AA4 2 TYR A1094 HIS A1095 0 SHEET 2 AA4 2 ARG A1102 PHE A1103 -1 O PHE A1103 N TYR A1094 LINK O3' DG C 23 P 5CM C 24 1555 1555 1.60 LINK O3' 5CM C 24 P DG C 25 1555 1555 1.60 LINK O3' DC C 26 P 5CM C 27 1555 1555 1.61 LINK O3' 5CM C 27 P DG C 28 1555 1555 1.60 LINK O3' DT D 8 P 5CM D 9 1555 1555 1.60 LINK O3' 5CM D 9 P DG D 10 1555 1555 1.62 LINK O3' DG D 11 P 5CM D 12 1555 1555 1.60 LINK O3' 5CM D 12 P DG D 13 1555 1555 1.60 LINK SG CYS A1012 ZN ZN A1204 1555 1555 2.27 LINK SG CYS A1015 ZN ZN A1204 1555 1555 2.25 LINK NE2 HIS A1028 ZN ZN A1204 1555 1555 2.09 LINK NE2 HIS A1032 ZN ZN A1204 1555 1555 2.18 LINK SG CYS A1040 ZN ZN A1202 1555 1555 2.32 LINK SG CYS A1043 ZN ZN A1202 1555 1555 2.32 LINK NE2 HIS A1056 ZN ZN A1202 1555 1555 2.09 LINK NE2 HIS A1060 ZN ZN A1202 1555 1555 2.00 LINK SG CYS A1068 ZN ZN A1201 1555 1555 2.27 LINK SG CYS A1071 ZN ZN A1201 1555 1555 2.21 LINK NE2 HIS A1084 ZN ZN A1201 1555 1555 2.15 LINK NE2 HIS A1088 ZN ZN A1201 1555 1555 2.12 LINK SG CYS A1096 ZN ZN A1203 1555 1555 2.32 LINK SG CYS A1099 ZN ZN A1203 1555 1555 2.23 LINK NE2 HIS A1112 ZN ZN A1203 1555 1555 2.07 LINK NE2 HIS A1116 ZN ZN A1203 1555 1555 2.10 SITE 1 AC1 4 CYS A1068 CYS A1071 HIS A1084 HIS A1088 SITE 1 AC2 4 CYS A1040 CYS A1043 HIS A1056 HIS A1060 SITE 1 AC3 4 CYS A1096 CYS A1099 HIS A1112 HIS A1116 SITE 1 AC4 4 CYS A1012 CYS A1015 HIS A1028 HIS A1032 CRYST1 70.804 77.270 103.756 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014123 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012942 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009638 0.00000