HEADER SIGNALING PROTEIN 31-JUL-18 6E95 TITLE CHIMERIC STRUCTURE OF SACCHAROMYCES CEREVISIAE GCN4 LEUCINE ZIPPER TITLE 2 FUSED TO STAPHYLOCOCCUS AUREUS AGRC CYTOPLASMIC HISTIDINE KINASE TITLE 3 MODULE (DATASET ISOTROPICALLY TRUNCATED BY HKL2000) COMPND MOL_ID: 1; COMPND 2 MOLECULE: STAPHYLOCOCCUS AUREUS AGRC HISTIDINE KINASE MODULE FUSED TO COMPND 3 SACCHAROMYCES CEREVISIAE GCN4 LEUCINE ZIPPER; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: AMINO ACID BIOSYNTHESIS REGULATORY PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CHIMERA CONSTRUCTED BY FUSING SACCHAROMYCES CEREVISIAE COMPND 8 GCN4 LEUCINE ZIPPER (RESIDUES 250-274) TO THE N-TERMINUS OF COMPND 9 STAPHYLOCOCCUS AUREUS AGRC CYTOPLASMIC HISTIDINE KINASE MODULE COMPND 10 (RESIDUES 209-430) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE, STAPHYLOCOCCUS SOURCE 3 AUREUS; SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292, 1280; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: GCN4, AAS3, ARG9, YEL009C, AGRC; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN HISTIDINE KINASE, BACTERIAL QUORUM SENSING, COILED COIL, KEYWDS 2 BERGERAT FOLD, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Q.XIE,P.D.JEFFREY,T.W.MUIR REVDAT 5 13-MAR-24 6E95 1 REMARK REVDAT 4 18-DEC-19 6E95 1 REMARK REVDAT 3 01-MAY-19 6E95 1 JRNL REVDAT 2 06-MAR-19 6E95 1 JRNL REVDAT 1 27-FEB-19 6E95 0 JRNL AUTH Q.XIE,A.ZHAO,P.D.JEFFREY,M.K.KIM,B.L.BASSLER,H.A.STONE, JRNL AUTH 2 R.P.NOVICK,T.W.MUIR JRNL TITL IDENTIFICATION OF A MOLECULAR LATCH THAT REGULATES JRNL TITL 2 STAPHYLOCOCCAL VIRULENCE. JRNL REF CELL CHEM BIOL V. 26 548 2019 JRNL REFN ESSN 2451-9448 JRNL PMID 30773482 JRNL DOI 10.1016/J.CHEMBIOL.2019.01.006 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.81 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 35732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.222 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1869 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.31 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.4180 REMARK 3 BIN FREE R VALUE SET COUNT : 146 REMARK 3 BIN FREE R VALUE : 0.4370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3791 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 255 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.30000 REMARK 3 B22 (A**2) : -2.81000 REMARK 3 B33 (A**2) : -6.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.246 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.781 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3864 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3681 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5214 ; 1.534 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8576 ; 1.278 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 473 ; 6.894 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 221 ;36.332 ;24.344 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 768 ;18.058 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;22.962 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4253 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 713 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1880 ; 5.436 ; 6.964 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1879 ; 5.427 ; 6.961 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2345 ; 8.071 ;10.429 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2346 ; 8.070 ;10.432 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1984 ; 5.725 ; 7.385 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1985 ; 5.724 ; 7.387 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2865 ; 8.787 ;10.854 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4393 ;13.025 ;79.897 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4332 ;13.005 ;79.702 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6E95 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000235731. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37648 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.95200 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATE-SHAPED CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0 AND 2.8 M NACL, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.68750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.48300 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.68750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 73.48300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 49350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 83.37500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 440 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 GLU A 204 REMARK 465 SER A 205 REMARK 465 PHE A 206 REMARK 465 SER A 207 REMARK 465 THR A 208 REMARK 465 LYS A 209 REMARK 465 GLY A 210 REMARK 465 GLU A 211 REMARK 465 GLY A 212 REMARK 465 ILE B 195 REMARK 465 PRO B 196 REMARK 465 ARG B 197 REMARK 465 ILE B 198 REMARK 465 HIS B 199 REMARK 465 GLU B 200 REMARK 465 LEU B 201 REMARK 465 PHE B 202 REMARK 465 GLN B 203 REMARK 465 GLU B 204 REMARK 465 SER B 205 REMARK 465 PHE B 206 REMARK 465 SER B 207 REMARK 465 THR B 208 REMARK 465 LYS B 209 REMARK 465 GLY B 210 REMARK 465 GLU B 211 REMARK 465 GLY B 212 REMARK 465 ARG B 213 REMARK 465 GLY B 214 REMARK 465 LEU B 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 215 CG CD1 CD2 REMARK 470 GLU B 180 CG CD OE1 OE2 REMARK 470 LEU B 217 CG CD1 CD2 REMARK 470 ASN B 250 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 434 O HOH A 442 1.90 REMARK 500 O HOH B 304 O HOH B 316 1.94 REMARK 500 O MET A 4 O HOH A 301 2.01 REMARK 500 OD1 ASP A 60 O HOH A 302 2.04 REMARK 500 O GLU A 178 O HOH A 303 2.14 REMARK 500 O HOH A 312 O HOH A 442 2.14 REMARK 500 OD1 ASP B 148 O HOH B 301 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 421 O HOH A 434 2565 1.88 REMARK 500 O HOH A 444 O HOH B 333 4655 2.08 REMARK 500 O HOH A 431 O HOH B 401 3645 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 85 1.52 -66.45 REMARK 500 ASN A 143 59.05 -92.45 REMARK 500 MET A 146 -62.96 -0.08 REMARK 500 SER A 179 -165.38 -75.30 REMARK 500 ASP A 193 -61.93 -94.43 REMARK 500 GLU A 200 39.55 -90.75 REMARK 500 LEU A 201 -19.68 -156.20 REMARK 500 ASN A 226 30.25 -84.92 REMARK 500 TYR B 30 -37.63 -134.57 REMARK 500 ASP B 76 76.90 -108.21 REMARK 500 GLU B 166 43.26 -89.42 REMARK 500 SER B 179 -153.59 -98.77 REMARK 500 ALA B 192 -125.55 -74.05 REMARK 500 ASN B 238 71.99 55.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 406 DISTANCE = 5.88 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6E52 RELATED DB: PDB REMARK 900 6E52 CONTAINS THE SAME PROTEIN, EXCEPT THAT THE DIFFRACTION DATA OF REMARK 900 WHICH WAS TRUNCATED ANISOTROPICALLY BY STARANISO DBREF 6E95 A 4 28 UNP P03069 GCN4_YEAST 250 274 DBREF1 6E95 A 29 250 UNP A0A224B0L3_STAAU DBREF2 6E95 A A0A224B0L3 2 223 DBREF 6E95 B 4 28 UNP P03069 GCN4_YEAST 250 274 DBREF1 6E95 B 29 250 UNP A0A224B0L3_STAAU DBREF2 6E95 B A0A224B0L3 2 223 SEQADV 6E95 GLY A 1 UNP P03069 EXPRESSION TAG SEQADV 6E95 SER A 2 UNP P03069 EXPRESSION TAG SEQADV 6E95 HIS A 3 UNP P03069 EXPRESSION TAG SEQADV 6E95 GLY B 1 UNP P03069 EXPRESSION TAG SEQADV 6E95 SER B 2 UNP P03069 EXPRESSION TAG SEQADV 6E95 HIS B 3 UNP P03069 EXPRESSION TAG SEQRES 1 A 250 GLY SER HIS MET LYS GLN LEU GLU ASP LYS VAL GLU GLU SEQRES 2 A 250 LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA SEQRES 3 A 250 ARG LEU LYS TYR LYS ARG ASN GLN GLU GLU ILE GLU THR SEQRES 4 A 250 TYR TYR GLU TYR THR LEU LYS ILE GLU ALA ILE ASN ASN SEQRES 5 A 250 GLU MET ARG LYS PHE ARG HIS ASP TYR VAL ASN ILE LEU SEQRES 6 A 250 THR THR LEU SER GLU TYR ILE ARG GLU ASP ASP MET PRO SEQRES 7 A 250 GLY LEU ARG ASP TYR PHE ASN LYS ASN ILE VAL PRO MET SEQRES 8 A 250 LYS ASP ASN LEU GLN MET ASN ALA ILE LYS LEU ASN GLY SEQRES 9 A 250 ILE GLU ASN LEU LYS VAL ARG GLU ILE LYS GLY LEU ILE SEQRES 10 A 250 THR ALA LYS ILE LEU ARG ALA GLN GLU MET ASN ILE PRO SEQRES 11 A 250 ILE SER ILE GLU ILE PRO ASP GLU VAL SER SER ILE ASN SEQRES 12 A 250 LEU ASN MET ILE ASP LEU SER ARG SER ILE GLY ILE ILE SEQRES 13 A 250 LEU ASP ASN ALA ILE GLU ALA SER THR GLU ILE ASP ASP SEQRES 14 A 250 PRO ILE ILE ARG VAL ALA PHE ILE GLU SER GLU ASN SER SEQRES 15 A 250 VAL THR PHE ILE VAL MET ASN LYS CYS ALA ASP ASP ILE SEQRES 16 A 250 PRO ARG ILE HIS GLU LEU PHE GLN GLU SER PHE SER THR SEQRES 17 A 250 LYS GLY GLU GLY ARG GLY LEU GLY LEU SER THR LEU LYS SEQRES 18 A 250 GLU ILE ALA ASP ASN ALA ASP ASN VAL LEU LEU ASP THR SEQRES 19 A 250 ILE ILE GLU ASN GLY PHE PHE ILE GLN LYS VAL GLU ILE SEQRES 20 A 250 ILE ASN ASN SEQRES 1 B 250 GLY SER HIS MET LYS GLN LEU GLU ASP LYS VAL GLU GLU SEQRES 2 B 250 LEU LEU SER LYS ASN TYR HIS LEU GLU ASN GLU VAL ALA SEQRES 3 B 250 ARG LEU LYS TYR LYS ARG ASN GLN GLU GLU ILE GLU THR SEQRES 4 B 250 TYR TYR GLU TYR THR LEU LYS ILE GLU ALA ILE ASN ASN SEQRES 5 B 250 GLU MET ARG LYS PHE ARG HIS ASP TYR VAL ASN ILE LEU SEQRES 6 B 250 THR THR LEU SER GLU TYR ILE ARG GLU ASP ASP MET PRO SEQRES 7 B 250 GLY LEU ARG ASP TYR PHE ASN LYS ASN ILE VAL PRO MET SEQRES 8 B 250 LYS ASP ASN LEU GLN MET ASN ALA ILE LYS LEU ASN GLY SEQRES 9 B 250 ILE GLU ASN LEU LYS VAL ARG GLU ILE LYS GLY LEU ILE SEQRES 10 B 250 THR ALA LYS ILE LEU ARG ALA GLN GLU MET ASN ILE PRO SEQRES 11 B 250 ILE SER ILE GLU ILE PRO ASP GLU VAL SER SER ILE ASN SEQRES 12 B 250 LEU ASN MET ILE ASP LEU SER ARG SER ILE GLY ILE ILE SEQRES 13 B 250 LEU ASP ASN ALA ILE GLU ALA SER THR GLU ILE ASP ASP SEQRES 14 B 250 PRO ILE ILE ARG VAL ALA PHE ILE GLU SER GLU ASN SER SEQRES 15 B 250 VAL THR PHE ILE VAL MET ASN LYS CYS ALA ASP ASP ILE SEQRES 16 B 250 PRO ARG ILE HIS GLU LEU PHE GLN GLU SER PHE SER THR SEQRES 17 B 250 LYS GLY GLU GLY ARG GLY LEU GLY LEU SER THR LEU LYS SEQRES 18 B 250 GLU ILE ALA ASP ASN ALA ASP ASN VAL LEU LEU ASP THR SEQRES 19 B 250 ILE ILE GLU ASN GLY PHE PHE ILE GLN LYS VAL GLU ILE SEQRES 20 B 250 ILE ASN ASN FORMUL 3 HOH *255(H2 O) HELIX 1 AA1 SER A 2 THR A 67 1 66 HELIX 2 AA2 LEU A 68 GLU A 74 1 7 HELIX 3 AA3 ASP A 76 ILE A 88 1 13 HELIX 4 AA4 PRO A 90 ASN A 103 1 14 HELIX 5 AA5 GLY A 104 GLU A 106 5 3 HELIX 6 AA6 VAL A 110 MET A 127 1 18 HELIX 7 AA7 ASN A 145 THR A 165 1 21 HELIX 8 AA8 ARG A 197 LEU A 201 5 5 HELIX 9 AA9 LEU A 217 ASN A 226 1 10 HELIX 10 AB1 SER B 2 LYS B 31 1 30 HELIX 11 AB2 ASN B 33 GLU B 74 1 42 HELIX 12 AB3 ASP B 76 ASN B 94 1 19 HELIX 13 AB4 LEU B 95 ILE B 100 5 6 HELIX 14 AB5 GLY B 104 LEU B 108 5 5 HELIX 15 AB6 VAL B 110 MET B 127 1 18 HELIX 16 AB7 ASN B 145 SER B 164 1 20 HELIX 17 AB8 LEU B 217 ASN B 226 1 10 SHEET 1 AA1 5 ILE A 131 GLU A 134 0 SHEET 2 AA1 5 ILE A 172 GLU A 178 1 O VAL A 174 N GLU A 134 SHEET 3 AA1 5 SER A 182 LYS A 190 -1 O THR A 184 N ILE A 177 SHEET 4 AA1 5 PHE A 240 ILE A 248 -1 O ILE A 247 N VAL A 183 SHEET 5 AA1 5 VAL A 230 GLU A 237 -1 N ILE A 235 O ILE A 242 SHEET 1 AA2 5 ILE B 131 GLU B 134 0 SHEET 2 AA2 5 ILE B 172 GLU B 178 1 O VAL B 174 N GLU B 134 SHEET 3 AA2 5 SER B 182 LYS B 190 -1 O MET B 188 N ARG B 173 SHEET 4 AA2 5 PHE B 240 ILE B 248 -1 O ILE B 247 N VAL B 183 SHEET 5 AA2 5 VAL B 230 ILE B 236 -1 N ASP B 233 O LYS B 244 CRYST1 63.141 83.375 146.966 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006804 0.00000