HEADER HYDROLASE 09-AUG-18 6EDM TITLE STRUCTURE OF APO-CDD-1 BETA-LACTAMASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIOIDES DIFFICILE; SOURCE 3 ORGANISM_TAXID: 1496; SOURCE 4 GENE: BLAR1_1, BGU81_18485, SAMEA3374989_01677; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-LACTAMASE, CLASS D, APO PROTEIN, ANTIMICROBIAL PROTEIN, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.A.SMITH,S.B.VAKULENKO REVDAT 4 25-MAR-20 6EDM 1 JRNL REVDAT 3 04-DEC-19 6EDM 1 JRNL REVDAT 2 09-OCT-19 6EDM 1 JRNL REVDAT 1 14-AUG-19 6EDM 0 JRNL AUTH N.K.STEWART,C.A.SMITH,M.TOTH,A.STASYUK,S.B.VAKULENKO JRNL TITL THE CRYSTAL STRUCTURES OF CDD-1, THE INTRINSIC CLASS D JRNL TITL 2 BETA-LACTAMASE FROM THE PATHOGENIC GRAM-POSITIVE BACTERIUM JRNL TITL 3 CLOSTRIDIOIDES DIFFICILE, AND ITS COMPLEX WITH CEFOTAXIME. JRNL REF J.STRUCT.BIOL. V. 208 07391 2019 JRNL REFN ESSN 1095-8657 JRNL PMID 31550535 JRNL DOI 10.1016/J.JSB.2019.09.008 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 3100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9747 - 3.9216 1.00 3027 141 0.1569 0.1866 REMARK 3 2 3.9216 - 3.1131 1.00 2804 171 0.1529 0.1638 REMARK 3 3 3.1131 - 2.7197 1.00 2770 159 0.1734 0.1981 REMARK 3 4 2.7197 - 2.4711 1.00 2768 142 0.1641 0.1957 REMARK 3 5 2.4711 - 2.2940 1.00 2722 155 0.1614 0.1738 REMARK 3 6 2.2940 - 2.1588 1.00 2774 120 0.1484 0.1945 REMARK 3 7 2.1588 - 2.0507 1.00 2723 141 0.1515 0.1610 REMARK 3 8 2.0507 - 1.9614 1.00 2720 142 0.1439 0.1857 REMARK 3 9 1.9614 - 1.8859 1.00 2712 147 0.1505 0.1683 REMARK 3 10 1.8859 - 1.8208 1.00 2714 133 0.1479 0.1765 REMARK 3 11 1.8208 - 1.7639 1.00 2703 141 0.1366 0.1721 REMARK 3 12 1.7639 - 1.7135 1.00 2707 129 0.1348 0.1601 REMARK 3 13 1.7135 - 1.6683 1.00 2713 137 0.1324 0.1835 REMARK 3 14 1.6683 - 1.6276 1.00 2700 121 0.1331 0.1667 REMARK 3 15 1.6276 - 1.5906 1.00 2691 144 0.1302 0.2032 REMARK 3 16 1.5906 - 1.5568 1.00 2668 144 0.1371 0.1992 REMARK 3 17 1.5568 - 1.5256 1.00 2707 131 0.1374 0.1680 REMARK 3 18 1.5256 - 1.4969 1.00 2696 137 0.1397 0.1763 REMARK 3 19 1.4969 - 1.4701 1.00 2676 141 0.1447 0.1994 REMARK 3 20 1.4701 - 1.4452 1.00 2694 135 0.1502 0.1935 REMARK 3 21 1.4452 - 1.4219 1.00 2665 140 0.1576 0.1913 REMARK 3 22 1.4219 - 1.4000 0.99 2617 149 0.1893 0.2400 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.110 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.570 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63142 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 39.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 3.0 M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.60050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 61.60050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.60050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 61.60050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 61.60050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 61.60050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 61.60050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 61.60050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 61.60050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 61.60050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 61.60050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 61.60050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 61.60050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 30.80025 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 92.40075 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 30.80025 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 30.80025 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 30.80025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 92.40075 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 30.80025 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 92.40075 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 30.80025 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 92.40075 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 30.80025 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 92.40075 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 92.40075 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 30.80025 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 92.40075 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 30.80025 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 30.80025 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 30.80025 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 92.40075 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 30.80025 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 30.80025 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 92.40075 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 92.40075 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 92.40075 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 30.80025 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 92.40075 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 30.80025 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 92.40075 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 30.80025 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 30.80025 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 30.80025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 662 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 33 72.69 71.70 REMARK 500 CYS A 44 -142.37 49.94 REMARK 500 ASN A 81 49.28 -89.30 REMARK 500 GLU A 126 70.52 -111.96 REMARK 500 GLU A 126 69.07 -110.98 REMARK 500 SER A 145 -142.88 -139.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 DBREF1 6EDM A 3 252 UNP A0A160YKM3_CLODI DBREF2 6EDM A A0A160YKM3 60 309 SEQADV 6EDM ALA A 2 UNP A0A160YKM EXPRESSION TAG SEQADV 6EDM ALA A 181 UNP A0A160YKM LYS 238 CONFLICT SEQADV 6EDM ALA A 187 UNP A0A160YKM LYS 244 CONFLICT SEQRES 1 A 251 ALA VAL ASN ILE VAL ASP TYR SER ASP CYS PHE GLU GLY SEQRES 2 A 251 ILE SER GLY GLY ALA ILE PHE CYS ASN THR LYS ASN LYS SEQRES 3 A 251 GLU TYR ASN ILE TYR ASN LYS GLU LEU ILE GLU THR ARG SEQRES 4 A 251 ARG SER PRO CYS SER THR PHE KCX ILE VAL SER THR LEU SEQRES 5 A 251 ILE GLY LEU GLU LYS GLY VAL ILE ASN SER LYS GLU SER SEQRES 6 A 251 VAL MET GLY TYR ASP GLY THR ASP TYR PRO ASN LYS ASN SEQRES 7 A 251 TRP ASN LYS ASN LEU SER LEU GLU GLU ALA PHE LYS GLU SEQRES 8 A 251 SER CYS VAL TRP TYR TYR LYS LYS LEU ILE ASN LYS VAL SEQRES 9 A 251 ASP ALA LYS SER VAL GLN ASN ILE LEU ASP ASP LEU LYS SEQRES 10 A 251 TYR GLY ASN CYS ASP ILE SER GLU TRP GLU GLY ASP LEU SEQRES 11 A 251 LYS ASN GLY LYS GLY HIS LEU ASN GLY PHE TRP LEU GLU SEQRES 12 A 251 SER SER LEU GLN ILE SER PRO LYS GLU GLN VAL GLN THR SEQRES 13 A 251 MET ALA LYS ILE PHE GLU GLY ASP THR ASN PHE LYS LYS SEQRES 14 A 251 GLU HIS ILE ASN ILE LEU ARG ASP ILE MET ALA ILE ASP SEQRES 15 A 251 VAL ASN ASP ALA ASN ILE ASN VAL TYR GLY LYS THR GLY SEQRES 16 A 251 THR GLY PHE ASP GLU LYS ASN LYS ARG VAL ASP ALA TRP SEQRES 17 A 251 PHE VAL GLY MET LEU GLU ARG GLU GLY ASP THR TYR TYR SEQRES 18 A 251 PHE ALA ILE LYS SER ASP ASP SER ASN LYS GLU ILE THR SEQRES 19 A 251 GLY PRO LYS VAL LYS GLU ILE ALA ILE ASN ILE ILE LYS SEQRES 20 A 251 LYS TYR TYR SER MODRES 6EDM KCX A 48 LYS MODIFIED RESIDUE HET KCX A 48 12 HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM SO4 SULFATE ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 HOH *291(H2 O) HELIX 1 AA1 TYR A 8 PHE A 12 5 5 HELIX 2 AA2 ASN A 33 GLU A 38 1 6 HELIX 3 AA3 PRO A 43 THR A 46 5 4 HELIX 4 AA4 PHE A 47 LYS A 58 1 12 HELIX 5 AA5 ASN A 77 ASN A 81 5 5 HELIX 6 AA6 SER A 85 SER A 93 1 9 HELIX 7 AA7 CYS A 94 ASN A 103 1 10 HELIX 8 AA8 ASP A 106 LYS A 118 1 13 HELIX 9 AA9 ASP A 130 GLY A 134 5 5 HELIX 10 AB1 SER A 150 GLU A 163 1 14 HELIX 11 AB2 LYS A 169 MET A 180 1 12 HELIX 12 AB3 THR A 235 TYR A 251 1 17 SHEET 1 AA1 7 VAL A 3 ILE A 5 0 SHEET 2 AA1 7 TYR A 29 TYR A 32 1 O TYR A 29 N ASN A 4 SHEET 3 AA1 7 GLY A 17 ASN A 23 -1 N ALA A 19 O TYR A 32 SHEET 4 AA1 7 ASP A 219 SER A 227 -1 O TYR A 222 N CYS A 22 SHEET 5 AA1 7 ARG A 205 ARG A 216 -1 N LEU A 214 O TYR A 221 SHEET 6 AA1 7 ASN A 190 ASP A 200 -1 N ASP A 200 O ARG A 205 SHEET 7 AA1 7 ALA A 181 ILE A 182 -1 N ILE A 182 O VAL A 191 LINK C PHE A 47 N KCX A 48 1555 1555 1.34 LINK C KCX A 48 N ILE A 49 1555 1555 1.33 SITE 1 AC1 8 SER A 45 SER A 93 LYS A 194 THR A 195 SITE 2 AC1 8 GLY A 196 THR A 197 HOH A 407 HOH A 517 SITE 1 AC2 5 ARG A 40 ASN A 121 GLN A 148 HOH A 463 SITE 2 AC2 5 HOH A 578 SITE 1 AC3 4 LYS A 152 GLN A 156 HOH A 434 HOH A 557 SITE 1 AC4 1 ARG A 40 SITE 1 AC5 2 LYS A 202 ASN A 203 CRYST1 123.201 123.201 123.201 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008117 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008117 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008117 0.00000