HEADER ELECTRON TRANSPORT 13-AUG-18 6EE7 TITLE SMALL TETRAHEME CYTOCHROME C FROM SHEWANELLA ONEIDENSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC TETRAHEME CYTOCHROME C CCTA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS (STRAIN MR-1); SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: CCTA, SO_2727; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ELECTRON TRANSFER, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR J.HUANG,J.ZARZYCKI,D.C.DUCAT,D.M.KRAMER REVDAT 5 11-OCT-23 6EE7 1 LINK REVDAT 4 24-JUN-20 6EE7 1 JRNL REVDAT 3 27-MAY-20 6EE7 1 COMPND JRNL REMARK HET REVDAT 3 2 1 HETNAM HETSYN FORMUL LINK REVDAT 3 3 1 SITE ATOM REVDAT 2 27-NOV-19 6EE7 1 REMARK REVDAT 1 14-AUG-19 6EE7 0 JRNL AUTH J.HUANG,J.ZARZYCKI,M.R.GUNNER,W.W.PARSON,J.F.KERN,J.YANO, JRNL AUTH 2 D.C.DUCAT,D.M.KRAMER JRNL TITL MESOSCOPIC TO MACROSCOPIC ELECTRON TRANSFER BY HOPPING IN A JRNL TITL 2 CRYSTAL NETWORK OF CYTOCHROMES. JRNL REF J.AM.CHEM.SOC. V. 142 10459 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32406683 JRNL DOI 10.1021/JACS.0C02729 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 16.92 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.600 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 34325 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3428 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 16.9230 - 4.0028 0.97 1257 140 0.1554 0.1830 REMARK 3 2 4.0028 - 3.1841 1.00 1309 145 0.1326 0.1538 REMARK 3 3 3.1841 - 2.7836 0.99 1306 140 0.1468 0.1397 REMARK 3 4 2.7836 - 2.5300 0.99 1299 143 0.1486 0.1690 REMARK 3 5 2.5300 - 2.3492 1.00 1309 148 0.1571 0.1670 REMARK 3 6 2.3492 - 2.2110 0.99 1281 145 0.1486 0.1512 REMARK 3 7 2.2110 - 2.1005 1.00 1320 146 0.1389 0.1853 REMARK 3 8 2.1005 - 2.0092 0.99 1296 145 0.1425 0.1932 REMARK 3 9 2.0092 - 1.9320 0.98 1268 143 0.1492 0.1664 REMARK 3 10 1.9320 - 1.8654 0.99 1312 143 0.1437 0.1581 REMARK 3 11 1.8654 - 1.8071 0.99 1294 144 0.1608 0.1920 REMARK 3 12 1.8071 - 1.7555 0.99 1267 142 0.1714 0.1900 REMARK 3 13 1.7555 - 1.7094 0.99 1322 143 0.1689 0.2333 REMARK 3 14 1.7094 - 1.6677 0.99 1300 146 0.1827 0.1771 REMARK 3 15 1.6677 - 1.6298 0.99 1265 140 0.1816 0.2217 REMARK 3 16 1.6298 - 1.5952 0.99 1324 141 0.1985 0.2011 REMARK 3 17 1.5952 - 1.5633 0.99 1352 153 0.1968 0.2527 REMARK 3 18 1.5633 - 1.5338 1.00 1246 141 0.2123 0.2148 REMARK 3 19 1.5338 - 1.5064 1.00 1354 149 0.2247 0.1874 REMARK 3 20 1.5064 - 1.4809 1.00 1295 144 0.2308 0.2463 REMARK 3 21 1.4809 - 1.4570 1.00 1253 137 0.2441 0.2610 REMARK 3 22 1.4570 - 1.4346 1.00 1321 146 0.2723 0.2461 REMARK 3 23 1.4346 - 1.4135 1.00 1338 150 0.2969 0.3171 REMARK 3 24 1.4135 - 1.3936 0.78 1009 114 0.3332 0.3689 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.024 884 REMARK 3 ANGLE : 1.698 1248 REMARK 3 CHIRALITY : 0.089 96 REMARK 3 PLANARITY : 0.009 151 REMARK 3 DIHEDRAL : 28.157 278 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 13 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.6422 -11.2650 28.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.1365 T22: 0.0999 REMARK 3 T33: 0.1687 T12: -0.0103 REMARK 3 T13: -0.0010 T23: 0.0031 REMARK 3 L TENSOR REMARK 3 L11: 2.6083 L22: 2.9469 REMARK 3 L33: 3.4846 L12: 0.0047 REMARK 3 L13: -0.6082 L23: -0.4788 REMARK 3 S TENSOR REMARK 3 S11: 0.0323 S12: -0.0654 S13: -0.2121 REMARK 3 S21: 0.2703 S22: -0.0215 S23: 0.0638 REMARK 3 S31: 0.3279 S32: -0.1334 S33: -0.0171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 14 THROUGH 28 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8768 -5.9740 19.7875 REMARK 3 T TENSOR REMARK 3 T11: 0.1143 T22: 0.1201 REMARK 3 T33: 0.1250 T12: 0.0104 REMARK 3 T13: 0.0049 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 3.2019 L22: 2.7512 REMARK 3 L33: 0.9359 L12: 2.3480 REMARK 3 L13: 1.1764 L23: 0.7539 REMARK 3 S TENSOR REMARK 3 S11: -0.0625 S12: 0.0908 S13: -0.1292 REMARK 3 S21: -0.1754 S22: 0.0362 S23: -0.1636 REMARK 3 S31: 0.0543 S32: 0.0808 S33: 0.0071 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 29 THROUGH 46 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.7612 4.9451 22.7451 REMARK 3 T TENSOR REMARK 3 T11: 0.1213 T22: 0.1172 REMARK 3 T33: 0.1109 T12: 0.0070 REMARK 3 T13: -0.0116 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.4609 L22: 0.8258 REMARK 3 L33: 1.0868 L12: -0.3173 REMARK 3 L13: -0.7366 L23: 0.6290 REMARK 3 S TENSOR REMARK 3 S11: 0.0306 S12: 0.0915 S13: 0.0866 REMARK 3 S21: -0.1174 S22: 0.0092 S23: -0.0107 REMARK 3 S31: -0.1391 S32: -0.0451 S33: -0.0265 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 47 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6213 11.5413 31.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.1389 T22: 0.1212 REMARK 3 T33: 0.1202 T12: 0.0004 REMARK 3 T13: 0.0036 T23: 0.0232 REMARK 3 L TENSOR REMARK 3 L11: 3.3434 L22: 1.9088 REMARK 3 L33: 1.5015 L12: -0.4270 REMARK 3 L13: -1.2474 L23: 0.5885 REMARK 3 S TENSOR REMARK 3 S11: 0.0802 S12: 0.1333 S13: 0.2438 REMARK 3 S21: -0.0434 S22: 0.0002 S23: -0.0741 REMARK 3 S31: -0.1466 S32: -0.0348 S33: -0.0606 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.0933 -3.1691 33.5197 REMARK 3 T TENSOR REMARK 3 T11: 0.1468 T22: 0.1229 REMARK 3 T33: 0.1236 T12: 0.0052 REMARK 3 T13: -0.0021 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 1.3673 L22: 2.1037 REMARK 3 L33: 1.3394 L12: 0.0437 REMARK 3 L13: -0.6778 L23: 0.1947 REMARK 3 S TENSOR REMARK 3 S11: -0.0107 S12: -0.0455 S13: -0.1698 REMARK 3 S21: 0.2108 S22: -0.0716 S23: -0.0708 REMARK 3 S31: 0.1935 S32: 0.0857 S33: 0.0649 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.9546 1.1309 40.2139 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.1718 REMARK 3 T33: 0.1587 T12: -0.0089 REMARK 3 T13: 0.0174 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 4.2693 L22: 8.2218 REMARK 3 L33: 3.8242 L12: 3.9363 REMARK 3 L13: 0.9538 L23: 2.4572 REMARK 3 S TENSOR REMARK 3 S11: -0.1210 S12: -0.0570 S13: -0.1737 REMARK 3 S21: 0.0813 S22: -0.0149 S23: 0.0755 REMARK 3 S31: 0.1655 S32: -0.0505 S33: 0.1169 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 84 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.9886 10.3308 44.3416 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.1641 REMARK 3 T33: 0.1445 T12: -0.0068 REMARK 3 T13: -0.0241 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.7724 L22: 1.4337 REMARK 3 L33: 1.8391 L12: -0.9553 REMARK 3 L13: -0.9721 L23: -0.4244 REMARK 3 S TENSOR REMARK 3 S11: -0.0163 S12: -0.2979 S13: 0.0217 REMARK 3 S21: 0.1777 S22: 0.0747 S23: -0.1616 REMARK 3 S31: 0.0878 S32: 0.0862 S33: -0.0511 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 85 THROUGH 90 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.5742 10.8373 41.6406 REMARK 3 T TENSOR REMARK 3 T11: 0.1886 T22: 0.2013 REMARK 3 T33: 0.1579 T12: 0.0334 REMARK 3 T13: 0.0055 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.9130 L22: 5.1625 REMARK 3 L33: 5.7590 L12: -0.1880 REMARK 3 L13: 0.3508 L23: 0.2783 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.0416 S13: 0.2834 REMARK 3 S21: 0.0034 S22: 0.0867 S23: 0.1871 REMARK 3 S31: -0.2335 S32: -0.2898 S33: -0.1801 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236153. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34487 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.394 REMARK 200 RESOLUTION RANGE LOW (A) : 16.922 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.61200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1M1R REMARK 200 REMARK 200 REMARK: ELONGATED PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5 MG/ML OF PURIFIED CYTOCHROME (1 MM REMARK 280 HEPES PH 8.0) WERE MIXED WITH RESERVOIR SOLUTION (16 PEG 3350, REMARK 280 15 MM ZNSO4 IN 1:1 (V/V) RATIO AND PLACED AT 277 K IN SITTING REMARK 280 DROP VAPOR DIFFUSION DISHES. CRYSTALS WERE HARVESTED AFTER CA. REMARK 280 10 DAYS AND TRANSFERRED TO 30% PEG 400 BEFORE FREEZING IN LIQUID REMARK 280 NITROGEN, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.92800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 939 O HOH A 966 2.08 REMARK 500 O HOH A 910 O HOH A 951 2.14 REMARK 500 O HOH A 1002 O HOH A 1006 2.16 REMARK 500 O HOH A 946 O HOH A 1023 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 981 O HOH A 1021 2357 2.15 REMARK 500 O HOH A 986 O HOH A 1009 1655 2.16 REMARK 500 O HOH A 965 O HOH A 996 2457 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 35 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 807 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 2 OD2 REMARK 620 2 ASP A 80 OD1 45.5 REMARK 620 3 LYS A 91 OXT 6.5 40.3 REMARK 620 4 HOH A 968 O 41.8 4.3 36.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 802 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 9 NE2 REMARK 620 2 HEC A 802 NA 92.5 REMARK 620 3 HEC A 802 NB 86.7 87.6 REMARK 620 4 HEC A 802 NC 88.1 175.8 88.3 REMARK 620 5 HEC A 802 ND 92.1 93.5 178.4 90.6 REMARK 620 6 HIS A 39 NE2 177.4 87.2 90.8 92.0 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 806 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 16 OE1 REMARK 620 2 GLU A 16 OE2 61.2 REMARK 620 3 HEC A 804 O1A 52.1 91.4 REMARK 620 4 HEC A 804 O2A 50.1 88.7 2.8 REMARK 620 5 HEC A 804 O1D 52.4 87.3 5.3 4.1 REMARK 620 6 HOH A 913 O 55.9 91.7 4.6 5.8 4.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 19 NE2 REMARK 620 2 HEC A 801 NA 92.4 REMARK 620 3 HEC A 801 NB 92.3 91.1 REMARK 620 4 HEC A 801 NC 85.4 177.4 87.6 REMARK 620 5 HEC A 801 ND 86.3 89.6 178.4 91.6 REMARK 620 6 HIS A 65 NE2 177.4 88.8 90.0 93.4 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 803 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 49 NE2 REMARK 620 2 HEC A 803 NA 93.5 REMARK 620 3 HEC A 803 NB 91.0 88.0 REMARK 620 4 HEC A 803 NC 86.2 176.9 88.9 REMARK 620 5 HEC A 803 ND 87.7 92.6 178.6 90.5 REMARK 620 6 HIS A 62 NE2 177.3 89.2 89.0 91.1 92.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A 804 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 52 NE2 REMARK 620 2 HEC A 804 NA 89.5 REMARK 620 3 HEC A 804 NB 89.5 87.2 REMARK 620 4 HEC A 804 NC 90.1 176.5 89.4 REMARK 620 5 HEC A 804 ND 90.4 93.0 179.8 90.5 REMARK 620 6 HIS A 79 NE2 178.6 92.0 90.5 88.5 89.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 805 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HEC A 801 O1A REMARK 620 2 HEC A 802 O1A 49.2 REMARK 620 3 HEC A 802 O2D 51.2 7.1 REMARK 620 4 HOH A 941 O 52.9 4.9 4.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEC A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 807 DBREF 6EE7 A 1 91 UNP Q8EDL6 Q8EDL6_SHEON 26 116 SEQRES 1 A 91 ALA ASP GLN LYS LEU SER ASP PHE HIS ALA GLU SER GLY SEQRES 2 A 91 GLY CYS GLU SER CYS HIS LYS ASP GLY THR PRO SER ALA SEQRES 3 A 91 ASP GLY ALA PHE GLU PHE ALA GLN CYS GLN SER CYS HIS SEQRES 4 A 91 GLY LYS LEU SER GLU MET ASP ALA VAL HIS LYS PRO HIS SEQRES 5 A 91 ASP GLY ASN LEU VAL CYS ALA ASP CYS HIS ALA VAL HIS SEQRES 6 A 91 ASP MET ASN VAL GLY GLN LYS PRO THR CYS GLU SER CYS SEQRES 7 A 91 HIS ASP ASP GLY ARG THR SER ALA SER VAL LEU LYS LYS HET HEC A 801 43 HET HEC A 802 43 HET HEC A 803 43 HET HEC A 804 43 HET ZN A 805 1 HET ZN A 806 1 HET ZN A 807 1 HETNAM HEC HEME C HETNAM ZN ZINC ION FORMUL 2 HEC 4(C34 H34 FE N4 O4) FORMUL 6 ZN 3(ZN 2+) FORMUL 9 HOH *140(H2 O) HELIX 1 AA1 LYS A 4 GLY A 14 1 11 HELIX 2 AA2 CYS A 15 CYS A 18 5 4 HELIX 3 AA3 HIS A 19 THR A 23 5 5 HELIX 4 AA4 GLY A 28 GLY A 40 1 13 HELIX 5 AA5 LYS A 41 MET A 45 5 5 HELIX 6 AA6 HIS A 49 ASP A 53 5 5 HELIX 7 AA7 VAL A 57 CYS A 61 5 5 HELIX 8 AA8 THR A 84 LYS A 90 1 7 LINK SG CYS A 15 CAB HEC A 801 1555 1555 1.90 LINK SG CYS A 18 CAC HEC A 801 1555 1555 1.89 LINK SG CYS A 35 CAB HEC A 802 1555 1555 1.97 LINK SG CYS A 38 CAC HEC A 802 1555 1555 2.12 LINK SG CYS A 58 CAB HEC A 803 1555 1555 1.88 LINK SG CYS A 61 CAC HEC A 803 1555 1555 2.05 LINK SG CYS A 75 CAB HEC A 804 1555 1555 2.01 LINK SG CYS A 78 CAC HEC A 804 1555 1555 2.05 LINK OD2 ASP A 2 ZN ZN A 807 1555 2448 2.62 LINK NE2 HIS A 9 FE HEC A 802 1555 1555 2.13 LINK OE1 GLU A 16 ZN ZN A 806 1555 2447 2.22 LINK OE2 GLU A 16 ZN ZN A 806 1555 2447 2.16 LINK NE2 HIS A 19 FE HEC A 801 1555 1555 2.06 LINK NE2 HIS A 39 FE HEC A 802 1555 1555 2.07 LINK NE2 HIS A 49 FE HEC A 803 1555 1555 2.21 LINK NE2 HIS A 52 FE HEC A 804 1555 1555 2.11 LINK NE2 HIS A 62 FE HEC A 803 1555 1555 2.04 LINK NE2 HIS A 65 FE HEC A 801 1555 1555 2.07 LINK NE2 HIS A 79 FE HEC A 804 1555 1555 2.05 LINK OD1 ASP A 80 ZN ZN A 807 1555 1555 1.95 LINK OXT LYS A 91 ZN ZN A 807 1555 1455 2.01 LINK O1A HEC A 801 ZN ZN A 805 1555 1655 1.89 LINK O1A HEC A 802 ZN ZN A 805 1555 1555 2.38 LINK O2D HEC A 802 ZN ZN A 805 1555 1555 1.80 LINK O1A HEC A 804 ZN ZN A 806 1555 1555 2.27 LINK O2A HEC A 804 ZN ZN A 806 1555 1555 2.04 LINK O1D HEC A 804 ZN ZN A 806 1555 1555 2.07 LINK ZN ZN A 805 O HOH A 941 1555 1555 1.99 LINK ZN ZN A 806 O HOH A 913 1555 1555 2.15 LINK ZN ZN A 807 O HOH A 968 1555 1555 1.88 SITE 1 AC1 15 SER A 6 HIS A 9 CYS A 15 SER A 17 SITE 2 AC1 15 CYS A 18 HIS A 19 VAL A 64 HIS A 65 SITE 3 AC1 15 HEC A 802 ZN A 805 HOH A 901 HOH A 905 SITE 4 AC1 15 HOH A 909 HOH A 934 HOH A 941 SITE 1 AC2 19 HIS A 9 SER A 17 PRO A 24 SER A 25 SITE 2 AC2 19 ALA A 26 GLN A 34 CYS A 35 CYS A 38 SITE 3 AC2 19 HIS A 39 CYS A 58 HIS A 62 VAL A 69 SITE 4 AC2 19 GLY A 70 HEC A 801 HEC A 803 ZN A 805 SITE 5 AC2 19 HOH A 908 HOH A 941 HOH A 944 SITE 1 AC3 16 HIS A 39 LEU A 42 ASP A 46 HIS A 49 SITE 2 AC3 16 HIS A 52 CYS A 58 CYS A 61 HIS A 62 SITE 3 AC3 16 PRO A 73 SER A 85 LEU A 89 HEC A 802 SITE 4 AC3 16 HEC A 804 HOH A 903 HOH A 943 HOH A 959 SITE 1 AC4 15 PRO A 51 HIS A 52 ASN A 55 LEU A 56 SITE 2 AC4 15 CYS A 75 SER A 77 CYS A 78 HIS A 79 SITE 3 AC4 15 ARG A 83 SER A 85 LYS A 91 HEC A 803 SITE 4 AC4 15 ZN A 806 HOH A 913 HOH A 947 SITE 1 AC5 3 HEC A 801 HEC A 802 HOH A 941 SITE 1 AC6 2 HEC A 804 HOH A 913 SITE 1 AC7 3 ASP A 80 LYS A 91 HOH A 968 CRYST1 24.595 63.856 28.979 90.00 97.21 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.040659 0.000000 0.005141 0.00000 SCALE2 0.000000 0.015660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.034783 0.00000