HEADER TRANSFERASE 16-AUG-18 6EF6 TITLE STRUCTURE OF THE MICROCOMPARTMENT-ASSOCIATED AMINOPROPANOL KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE PHOSPHOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS (STRAIN ATCC 700084 / SOURCE 3 MC(2)155); SOURCE 4 ORGANISM_TAXID: 246196; SOURCE 5 STRAIN: ATCC 700084 / MC(2)155; SOURCE 6 GENE: MSMEG_0270; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS AMINOPROPANOL KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.MALLETTE,M.S.KIMBER REVDAT 4 13-MAR-24 6EF6 1 HETSYN LINK REVDAT 3 08-JAN-20 6EF6 1 REMARK REVDAT 2 01-MAY-19 6EF6 1 TITLE JRNL REVDAT 1 17-OCT-18 6EF6 0 JRNL AUTH E.MALLETTE,M.S.KIMBER JRNL TITL STRUCTURAL AND KINETIC CHARACTERIZATION OF JRNL TITL 2 (S)-1-AMINO-2-PROPANOL KINASE FROM THE AMINOACETONE JRNL TITL 3 UTILIZATION MICROCOMPARTMENT OFMYCOBACTERIUM SMEGMATIS. JRNL REF J.BIOL.CHEM. V. 293 19909 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30361441 JRNL DOI 10.1074/JBC.RA118.005485 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 65635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8451 - 3.8381 1.00 2783 147 0.1471 0.1566 REMARK 3 2 3.8381 - 3.0468 0.99 2737 144 0.1286 0.1590 REMARK 3 3 3.0468 - 2.6617 0.99 2719 143 0.1470 0.1620 REMARK 3 4 2.6617 - 2.4184 1.00 2723 144 0.1406 0.1500 REMARK 3 5 2.4184 - 2.2451 1.00 2706 142 0.1319 0.1600 REMARK 3 6 2.2451 - 2.1127 1.00 2712 143 0.1302 0.1413 REMARK 3 7 2.1127 - 2.0069 1.00 2699 142 0.1349 0.1700 REMARK 3 8 2.0069 - 1.9196 1.00 2740 144 0.1459 0.1635 REMARK 3 9 1.9196 - 1.8457 1.00 2703 142 0.1495 0.1772 REMARK 3 10 1.8457 - 1.7820 1.00 2722 143 0.1580 0.1817 REMARK 3 11 1.7820 - 1.7263 1.00 2691 142 0.1557 0.1658 REMARK 3 12 1.7263 - 1.6769 1.00 2719 143 0.1524 0.1690 REMARK 3 13 1.6769 - 1.6328 1.00 2709 143 0.1567 0.1767 REMARK 3 14 1.6328 - 1.5929 1.00 2714 143 0.1658 0.1938 REMARK 3 15 1.5929 - 1.5567 1.00 2695 141 0.1745 0.1888 REMARK 3 16 1.5567 - 1.5236 1.00 2679 141 0.1757 0.2180 REMARK 3 17 1.5236 - 1.4931 1.00 2744 145 0.1824 0.1975 REMARK 3 18 1.4931 - 1.4649 1.00 2708 142 0.1958 0.2074 REMARK 3 19 1.4649 - 1.4388 1.00 2682 142 0.2067 0.2009 REMARK 3 20 1.4388 - 1.4144 1.00 2732 143 0.2087 0.2275 REMARK 3 21 1.4144 - 1.3916 1.00 2689 142 0.2273 0.2137 REMARK 3 22 1.3916 - 1.3702 0.99 2705 142 0.2457 0.2836 REMARK 3 23 1.3702 - 1.3500 0.98 2642 139 0.2653 0.2859 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2729 REMARK 3 ANGLE : 1.164 3723 REMARK 3 CHIRALITY : 0.090 400 REMARK 3 PLANARITY : 0.009 492 REMARK 3 DIHEDRAL : 22.518 987 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 7 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.9542 21.8488 27.1873 REMARK 3 T TENSOR REMARK 3 T11: 0.2325 T22: 0.3887 REMARK 3 T33: 0.1908 T12: 0.0329 REMARK 3 T13: -0.0171 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 2.4038 L22: 1.3653 REMARK 3 L33: 3.6038 L12: 0.4985 REMARK 3 L13: 0.8505 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.4472 S13: 0.1219 REMARK 3 S21: -0.2711 S22: 0.0045 S23: 0.2615 REMARK 3 S31: -0.0191 S32: -0.2835 S33: 0.0082 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4479 19.0552 29.5887 REMARK 3 T TENSOR REMARK 3 T11: 0.2363 T22: 0.3265 REMARK 3 T33: 0.1830 T12: 0.0193 REMARK 3 T13: -0.0111 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 0.9540 L22: 0.7697 REMARK 3 L33: 2.8266 L12: -0.1309 REMARK 3 L13: 0.1359 L23: -0.7521 REMARK 3 S TENSOR REMARK 3 S11: 0.0388 S12: 0.4250 S13: 0.1368 REMARK 3 S21: -0.2278 S22: 0.0344 S23: 0.0870 REMARK 3 S31: 0.0064 S32: -0.1012 S33: -0.0605 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.0034 26.9497 46.9135 REMARK 3 T TENSOR REMARK 3 T11: 0.1338 T22: 0.1501 REMARK 3 T33: 0.1258 T12: -0.0025 REMARK 3 T13: 0.0045 T23: 0.0379 REMARK 3 L TENSOR REMARK 3 L11: 1.6309 L22: 0.6612 REMARK 3 L33: 1.2294 L12: -0.3191 REMARK 3 L13: -0.3780 L23: 0.2020 REMARK 3 S TENSOR REMARK 3 S11: 0.1223 S12: 0.1856 S13: 0.1970 REMARK 3 S21: -0.1244 S22: -0.0888 S23: -0.1606 REMARK 3 S31: -0.1353 S32: 0.1081 S33: -0.0522 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2375 22.7953 50.6827 REMARK 3 T TENSOR REMARK 3 T11: 0.1586 T22: 0.1181 REMARK 3 T33: 0.1376 T12: -0.0039 REMARK 3 T13: 0.0004 T23: 0.0353 REMARK 3 L TENSOR REMARK 3 L11: 1.3904 L22: 0.9643 REMARK 3 L33: 1.9725 L12: -0.6782 REMARK 3 L13: -0.6543 L23: 0.8846 REMARK 3 S TENSOR REMARK 3 S11: 0.0054 S12: 0.1236 S13: 0.0497 REMARK 3 S21: 0.0043 S22: -0.0278 S23: -0.0139 REMARK 3 S31: 0.1597 S32: 0.0212 S33: -0.0231 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 237 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3907 20.0095 54.6787 REMARK 3 T TENSOR REMARK 3 T11: 0.1250 T22: 0.1053 REMARK 3 T33: 0.1176 T12: -0.0005 REMARK 3 T13: -0.0040 T23: 0.0059 REMARK 3 L TENSOR REMARK 3 L11: 1.7945 L22: 2.0976 REMARK 3 L33: 1.0485 L12: -0.7999 REMARK 3 L13: -0.1985 L23: 0.2236 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.0338 S13: -0.0282 REMARK 3 S21: 0.0390 S22: -0.0213 S23: -0.0116 REMARK 3 S31: -0.0120 S32: 0.0117 S33: 0.0098 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9252 27.2502 59.7445 REMARK 3 T TENSOR REMARK 3 T11: 0.1344 T22: 0.0787 REMARK 3 T33: 0.1321 T12: -0.0059 REMARK 3 T13: 0.0162 T23: 0.0100 REMARK 3 L TENSOR REMARK 3 L11: 8.0203 L22: 2.0125 REMARK 3 L33: 5.4682 L12: -0.0240 REMARK 3 L13: 3.5790 L23: 0.3943 REMARK 3 S TENSOR REMARK 3 S11: -0.0317 S12: 0.0421 S13: 0.1920 REMARK 3 S21: 0.0059 S22: -0.0741 S23: 0.0515 REMARK 3 S31: 0.0550 S32: -0.0767 S33: -0.0382 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65639 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 5.80000 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.51700 REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM MALONATE, 0.1 M HEPES PH REMARK 280 7, 0.5% (V/V) JEFFAMINE E.D. 2001, 30 MG/ML PROTEIN, SERIAL REMARK 280 SEEDING WITH 1/1000 DILUTED CRUSHED CRYSTALS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.00500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.02500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.00500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.02500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 687 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 ILE A 4 REMARK 465 THR A 5 REMARK 465 ASP A 6 REMARK 465 SER A 99 REMARK 465 ASP A 100 REMARK 465 ALA A 101 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE22 GLN A 57 O HOH A 501 1.54 REMARK 500 O HOH A 511 O HOH A 607 1.95 REMARK 500 O HOH A 646 O HOH A 709 1.96 REMARK 500 NE2 GLN A 57 O HOH A 501 1.98 REMARK 500 O GLY A 42 O HOH A 502 1.98 REMARK 500 O HOH A 541 O HOH A 639 2.03 REMARK 500 O VAL A 20 O HOH A 503 2.07 REMARK 500 O HOH A 540 O HOH A 696 2.13 REMARK 500 OE2 GLU A 180 O HOH A 504 2.17 REMARK 500 NE ARG A 272 O HOH A 505 2.18 REMARK 500 O HOH A 511 O HOH A 644 2.19 REMARK 500 O SER A 32 O HOH A 506 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 504 O HOH A 504 2557 1.49 REMARK 500 O HOH A 504 O HOH A 632 2557 1.93 REMARK 500 O HOH A 637 O HOH A 710 2557 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 213 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 30 56.24 -92.94 REMARK 500 SER A 32 154.35 74.71 REMARK 500 ASP A 54 -6.03 76.56 REMARK 500 ALA A 97 -111.53 -66.56 REMARK 500 TRP A 155 56.53 -108.35 REMARK 500 ASP A 211 49.58 -149.58 REMARK 500 PRO A 224 171.56 -59.49 REMARK 500 GLN A 225 88.53 57.28 REMARK 500 PHE A 251 -7.94 74.39 REMARK 500 HIS A 303 32.46 -158.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 171 O REMARK 620 2 VAL A 176 O 113.8 REMARK 620 3 HOH A 573 O 85.2 89.5 REMARK 620 4 HOH A 598 O 92.6 89.4 176.9 REMARK 620 5 HOH A 686 O 75.7 170.1 88.8 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 211 OD2 REMARK 620 2 ASP A 232 OD2 93.2 REMARK 620 3 HOH A 557 O 102.1 163.1 REMARK 620 4 HOH A 658 O 163.1 70.8 93.2 REMARK 620 5 HOH A 661 O 98.6 86.7 98.0 86.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BEZ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JFN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 405 DBREF 6EF6 A 1 334 UNP A0QP47 A0QP47_MYCS2 1 334 SEQADV 6EF6 MET A -19 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 GLY A -18 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 SER A -17 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 SER A -16 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -15 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -14 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -13 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -12 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -11 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A -10 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 SER A -9 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 SER A -8 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 GLY A -7 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 LEU A -6 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 VAL A -5 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 PRO A -4 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 ARG A -3 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 GLY A -2 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 SER A -1 UNP A0QP47 EXPRESSION TAG SEQADV 6EF6 HIS A 0 UNP A0QP47 EXPRESSION TAG SEQRES 1 A 354 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 354 LEU VAL PRO ARG GLY SER HIS MET GLY VAL ILE THR ASP SEQRES 3 A 354 ASP VAL THR ILE ALA GLN GLN ALA LEU THR HIS TYR ASP SEQRES 4 A 354 VAL SER ASP ASN ALA SER LEU ARG LEU LEU ASN LEU SER SEQRES 5 A 354 GLU ASN ALA THR TYR LEU VAL GLU ASP GLY GLU HIS GLN SEQRES 6 A 354 SER ILE LEU ARG VAL HIS ARG GLN ASP TYR HIS GLN PRO SEQRES 7 A 354 HIS GLU ILE GLU SER GLU LEU ASP TRP LEU ALA ALA LEU SEQRES 8 A 354 ARG THR ASP SER ASP VAL THR VAL PRO THR VAL VAL PRO SEQRES 9 A 354 ALA ARG ASP GLY ARG ARG VAL VAL THR VAL ASP PRO ALA SEQRES 10 A 354 ASP SER ASP ALA VAL PRO ARG HIS VAL VAL HIS PHE GLU SEQRES 11 A 354 MET VAL GLY GLY ALA GLU PRO ASP GLU GLU SER LEU THR SEQRES 12 A 354 LEU ASP ASP PHE GLN THR LEU GLY ARG ILE THR ALA SER SEQRES 13 A 354 LEU HIS GLU HIS SER GLN ARG TRP THR ARG PRO ALA GLY SEQRES 14 A 354 PHE GLY ARG PHE SER TRP ASP TRP GLU HIS CYS LEU GLY SEQRES 15 A 354 ASP THR PRO ARG TRP GLY ARG TRP GLN ASP ALA GLU GLY SEQRES 16 A 354 VAL GLY ALA SER GLU THR ALA LEU LEU THR ARG ALA GLN SEQRES 17 A 354 ASP LEU LEU HIS ARG LYS LEU GLU GLU TYR GLY SER GLY SEQRES 18 A 354 PRO ASP ARG TYR GLY LEU ILE HIS ALA ASP LEU ARG LEU SEQRES 19 A 354 ALA ASN LEU LEU VAL ASP SER SER THR PRO GLN ARG THR SEQRES 20 A 354 ILE THR VAL ILE ASP PHE ASP ASP CYS GLY PHE GLY TRP SEQRES 21 A 354 TYR PHE TYR ASP PHE GLY THR ALA VAL SER PHE ILE GLU SEQRES 22 A 354 HIS ASP PRO ARG LEU GLY GLU TRP GLN GLU SER TRP VAL SEQRES 23 A 354 ALA GLY TYR ARG SER ARG ARG GLU LEU PRO ALA ALA ASP SEQRES 24 A 354 GLU ALA MET LEU PRO SER PHE VAL PHE LEU ARG ARG LEU SEQRES 25 A 354 LEU LEU LEU ALA TRP MET GLY SER HIS THR HIS SER ARG SEQRES 26 A 354 GLU SER ALA THR LYS ALA ILE SER TYR ALA ALA GLY SER SEQRES 27 A 354 CYS ALA LEU ALA GLU ARG TYR LEU SER SER ASP GLY LEU SEQRES 28 A 354 ARG LEU THR HET BEZ A 401 14 HET JFN A 402 17 HET NA A 403 1 HET NA A 404 1 HET ACT A 405 7 HETNAM BEZ BENZOIC ACID HETNAM JFN (2R)-1-METHOXYPROPAN-2-AMINE HETNAM NA SODIUM ION HETNAM ACT ACETATE ION HETSYN JFN JEFFAMINE FORMUL 2 BEZ C7 H6 O2 FORMUL 3 JFN C4 H11 N O FORMUL 4 NA 2(NA 1+) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *231(H2 O) HELIX 1 AA1 ASP A 7 THR A 16 1 10 HELIX 2 AA2 GLN A 57 SER A 75 1 19 HELIX 3 AA3 ASP A 126 TRP A 144 1 19 HELIX 4 AA4 ASP A 156 LEU A 161 1 6 HELIX 5 AA5 ARG A 169 ALA A 173 5 5 HELIX 6 AA6 GLY A 177 GLY A 199 1 23 HELIX 7 AA7 ARG A 213 ALA A 215 5 3 HELIX 8 AA8 ASP A 232 CYS A 236 5 5 HELIX 9 AA9 PHE A 242 VAL A 249 1 8 HELIX 10 AB1 ARG A 257 SER A 271 1 15 HELIX 11 AB2 PRO A 276 ALA A 281 1 6 HELIX 12 AB3 MET A 282 HIS A 301 1 20 HELIX 13 AB4 SER A 304 SER A 328 1 25 SHEET 1 AA1 5 SER A 25 LEU A 28 0 SHEET 2 AA1 5 ALA A 35 ASP A 41 -1 O LEU A 38 N ARG A 27 SHEET 3 AA1 5 HIS A 44 VAL A 50 -1 O SER A 46 N VAL A 39 SHEET 4 AA1 5 ARG A 104 GLU A 110 -1 O PHE A 109 N ILE A 47 SHEET 5 AA1 5 VAL A 92 VAL A 94 -1 N VAL A 94 O ARG A 104 SHEET 1 AA2 2 TYR A 205 ILE A 208 0 SHEET 2 AA2 2 GLY A 237 TRP A 240 -1 O GLY A 237 N ILE A 208 SHEET 1 AA3 2 LEU A 217 VAL A 219 0 SHEET 2 AA3 2 ILE A 228 VAL A 230 -1 O THR A 229 N LEU A 218 LINK O GLN A 171 NA NA A 404 1555 1555 2.22 LINK O VAL A 176 NA NA A 404 1555 1555 2.34 LINK OD2 ASP A 211 NA NA A 403 1555 1555 2.21 LINK OD2 ASP A 232 NA NA A 403 1555 1555 2.60 LINK NA NA A 403 O HOH A 557 1555 1555 2.03 LINK NA NA A 403 O HOH A 658 1555 1555 2.47 LINK NA NA A 403 O HOH A 661 1555 1555 2.21 LINK NA NA A 404 O HOH A 573 1555 1555 2.29 LINK NA NA A 404 O HOH A 598 1555 1555 2.34 LINK NA NA A 404 O HOH A 686 1555 1555 2.77 CISPEP 1 PRO A 117 ASP A 118 0 -2.36 SITE 1 AC1 6 ILE A 47 ARG A 49 PHE A 109 ASP A 232 SITE 2 AC1 6 HOH A 552 HOH A 613 SITE 1 AC2 5 GLU A 33 TRP A 167 ARG A 213 TRP A 297 SITE 2 AC2 5 HOH A 557 SITE 1 AC3 5 ASP A 211 ASP A 232 HOH A 557 HOH A 658 SITE 2 AC3 5 HOH A 661 SITE 1 AC4 5 GLN A 171 VAL A 176 HOH A 573 HOH A 598 SITE 2 AC4 5 HOH A 686 SITE 1 AC5 9 THR A 129 ARG A 132 ARG A 186 PRO A 224 SITE 2 AC5 9 GLN A 225 ARG A 226 ILE A 228 ARG A 305 SITE 3 AC5 9 HOH A 587 CRYST1 72.010 70.050 60.720 90.00 95.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013887 0.000000 0.001245 0.00000 SCALE2 0.000000 0.014276 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016535 0.00000