HEADER SUGAR BINDING PROTEIN 16-AUG-18 6EF9 TITLE GSPB SIGLEC DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLATELET BINDING PROTEIN GSPB - SIGLEC DOMAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE-RICH ADHESIN FOR PLATELETS,SERINE-RICH REPEAT PROTEIN COMPND 5 GSPB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS GORDONII; SOURCE 3 ORGANISM_TAXID: 1302; SOURCE 4 GENE: GSPB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS LECTIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.M.IVERSON REVDAT 3 22-MAY-24 6EF9 1 REMARK REVDAT 2 01-JUN-22 6EF9 1 JRNL LINK REVDAT 1 19-FEB-20 6EF9 0 JRNL AUTH B.A.BENSING,H.E.STUBBS,R.AGARWAL,I.YAMAKAWA,K.LUONG, JRNL AUTH 2 K.SOLAKYILDIRIM,H.YU,A.HADADIANPOUR,M.A.CASTRO, JRNL AUTH 3 K.P.FIALKOWSKI,K.M.MORRISON,Z.WAWRZAK,X.CHEN,C.B.LEBRILLA, JRNL AUTH 4 J.BAUDRY,J.C.SMITH,P.M.SULLAM,T.M.IVERSON JRNL TITL ORIGINS OF GLYCAN SELECTIVITY IN STREPTOCOCCAL SIGLEC-LIKE JRNL TITL 2 ADHESINS SUGGEST MECHANISMS OF RECEPTOR ADAPTATION. JRNL REF NAT COMMUN V. 13 2753 2022 JRNL REFN ESSN 2041-1723 JRNL PMID 35585145 JRNL DOI 10.1038/S41467-022-30509-Y REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.131 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.470 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2299 - 3.1324 1.00 4152 149 0.1377 0.1421 REMARK 3 2 3.1324 - 2.4865 1.00 4031 145 0.1446 0.1543 REMARK 3 3 2.4865 - 2.1723 1.00 4007 144 0.1314 0.1325 REMARK 3 4 2.1723 - 1.9737 1.00 4005 144 0.1122 0.1270 REMARK 3 5 1.9737 - 1.8323 1.00 3953 142 0.1174 0.1394 REMARK 3 6 1.8323 - 1.7242 1.00 4001 144 0.1192 0.1370 REMARK 3 7 1.7242 - 1.6379 1.00 3952 141 0.1176 0.1445 REMARK 3 8 1.6379 - 1.5666 1.00 3952 142 0.1150 0.1207 REMARK 3 9 1.5666 - 1.5063 1.00 3963 143 0.1163 0.1757 REMARK 3 10 1.5063 - 1.4543 1.00 3957 142 0.1166 0.1279 REMARK 3 11 1.4543 - 1.4088 1.00 3951 142 0.1223 0.1507 REMARK 3 12 1.4088 - 1.3686 1.00 3967 142 0.1422 0.1722 REMARK 3 13 1.3686 - 1.3325 1.00 3931 142 0.1588 0.1891 REMARK 3 14 1.3325 - 1.3000 0.98 3856 138 0.1890 0.2115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.170 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1003 REMARK 3 ANGLE : 0.981 1368 REMARK 3 CHIRALITY : 0.081 158 REMARK 3 PLANARITY : 0.008 180 REMARK 3 DIHEDRAL : 17.190 357 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236224. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57769 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.80 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 59.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4 M NAFORMATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 46.04150 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 26.58207 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.97600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 46.04150 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 26.58207 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.97600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 46.04150 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 26.58207 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 47.97600 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 46.04150 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 26.58207 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 47.97600 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 46.04150 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 26.58207 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 47.97600 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 46.04150 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 26.58207 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 47.97600 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 53.16414 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 95.95200 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 53.16414 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 95.95200 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 53.16414 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 95.95200 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 53.16414 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 95.95200 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 53.16414 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 95.95200 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 53.16414 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 95.95200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 46.04150 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 26.58207 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 47.97600 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 C FMT A 607 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 895 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 906 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 908 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 395 REMARK 465 PRO A 396 REMARK 465 GLY A 397 REMARK 465 SER A 398 REMARK 465 ASP A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 400 OG1 CG2 REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 ASN A 428 CG OD1 ND2 REMARK 470 ASP A 476 CG OD1 OD2 REMARK 470 VAL A 507 CG1 CG2 REMARK 470 LYS A 509 CG CD CE NZ REMARK 470 LYS A 517 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 830 O HOH A 863 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 449 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 912 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A 913 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A 914 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH A 915 DISTANCE = 6.88 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 601 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 401 O REMARK 620 2 ASP A 427 OD1 102.0 REMARK 620 3 ASP A 427 OD2 152.9 51.3 REMARK 620 4 ASP A 490 OD2 86.7 93.4 98.3 REMARK 620 5 FMT A 610 O1 104.9 144.3 101.3 65.5 REMARK 620 6 FMT A 610 O2 105.6 142.8 97.1 112.6 47.2 REMARK 620 7 FMT A 611 O1 80.0 60.2 81.4 146.6 147.7 100.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 602 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 406 OD1 REMARK 620 2 HOH A 758 O 95.7 REMARK 620 3 HOH A 834 O 92.5 92.3 REMARK 620 4 HOH A 853 O 85.5 173.1 94.5 REMARK 620 5 HOH A 854 O 87.5 87.3 179.6 86.0 REMARK 620 6 HOH A 911 O 171.7 90.8 92.3 87.4 87.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 418 OG REMARK 620 2 HOH A 781 O 78.7 REMARK 620 3 HOH A 812 O 98.9 171.8 REMARK 620 4 HOH A 823 O 81.4 84.7 102.8 REMARK 620 5 HOH A 839 O 82.4 85.5 86.4 162.5 REMARK 620 6 HOH A 904 O 169.9 91.3 91.2 97.0 97.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 604 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 427 O REMARK 620 2 ASN A 430 OD1 92.2 REMARK 620 3 HOH A 744 O 77.0 98.7 REMARK 620 4 HOH A 850 O 80.6 166.8 90.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 603 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 883 O REMARK 620 2 HOH A 886 O 93.8 REMARK 620 3 HOH A 887 O 85.6 95.7 REMARK 620 4 HOH A 903 O 86.8 82.7 172.1 REMARK 620 5 HOH A 912 O 178.1 85.1 93.0 94.6 REMARK 620 6 HOH A 914 O 90.0 172.2 91.3 90.8 91.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 606 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 760 O REMARK 620 2 HOH A 853 O 79.9 REMARK 620 3 HOH A 854 O 84.5 85.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 609 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 610 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT A 611 DBREF 6EF9 A 395 521 PDB 6EF9 6EF9 395 521 SEQRES 1 A 127 GLY PRO GLY SER ASP THR GLU ARG PRO VAL VAL ASN VAL SEQRES 2 A 127 PRO SER GLU ILE THR VAL TYR ARG GLY GLU SER PHE GLU SEQRES 3 A 127 TYR PHE ALA THR VAL THR ASP ASN SER ASN ALA PHE ASP SEQRES 4 A 127 LEU ALA LYS THR VAL VAL ARG TRP LEU TYR SER ASN GLN SEQRES 5 A 127 PRO GLY ARG GLY THR GLU TRP LEU GLN TYR SER VAL THR SEQRES 6 A 127 GLN VAL GLY ASN GLN LEU LYS VAL ARG ILE PHE GLY ASN SEQRES 7 A 127 VAL PRO ILE ASP THR THR ILE GLY ASP TYR THR ARG TYR SEQRES 8 A 127 VAL VAL ALA THR ASP ALA ALA GLY ASN VAL ASN ALA THR SEQRES 9 A 127 GLN THR GLU MET GLY ASN ALA ALA VAL ASP LYS THR SER SEQRES 10 A 127 VAL ASN GLY GLN PHE LYS LEU ILE ILE ARG HET NA A 601 1 HET NA A 602 1 HET NA A 603 1 HET NA A 604 1 HET NA A 605 1 HET NA A 606 1 HET FMT A 607 4 HET FMT A 608 4 HET FMT A 609 4 HET FMT A 610 4 HET FMT A 611 4 HETNAM NA SODIUM ION HETNAM FMT FORMIC ACID FORMUL 2 NA 6(NA 1+) FORMUL 8 FMT 5(C H2 O2) FORMUL 13 HOH *215(H2 O) HELIX 1 AA1 ASP A 433 THR A 437 5 5 HELIX 2 AA2 THR A 498 LYS A 509 1 12 SHEET 1 AA1 4 VAL A 404 ASN A 406 0 SHEET 2 AA1 4 SER A 418 THR A 426 -1 O THR A 424 N ASN A 406 SHEET 3 AA1 4 GLN A 464 ASN A 472 -1 O ILE A 469 N TYR A 421 SHEET 4 AA1 4 GLN A 455 VAL A 461 -1 N THR A 459 O LYS A 466 SHEET 1 AA2 4 GLU A 410 TYR A 414 0 SHEET 2 AA2 4 GLN A 515 ARG A 521 1 O LYS A 517 N ILE A 411 SHEET 3 AA2 4 GLY A 480 VAL A 487 -1 N TYR A 482 O LEU A 518 SHEET 4 AA2 4 VAL A 438 ARG A 440 -1 N VAL A 438 O VAL A 487 LINK O GLU A 401 NA NA A 601 1555 1555 2.25 LINK OD1 ASN A 406 NA NA A 602 1555 1555 2.46 LINK OG SER A 418 NA NA A 605 1555 1555 2.41 LINK OD1 ASP A 427 NA NA A 601 1555 1555 2.42 LINK OD2 ASP A 427 NA NA A 601 1555 1555 2.45 LINK O ASP A 427 NA NA A 604 1555 1555 2.40 LINK OD1 ASN A 430 NA NA A 604 1555 1555 2.39 LINK OD2 ASP A 490 NA NA A 601 1555 1555 2.30 LINK NA NA A 601 O1 FMT A 610 1555 1555 2.84 LINK NA NA A 601 O2 FMT A 610 1555 1555 2.44 LINK NA NA A 601 O1 FMT A 611 1555 1555 3.01 LINK NA NA A 602 O HOH A 758 1555 1555 2.50 LINK NA NA A 602 O HOH A 834 1555 1555 2.55 LINK NA NA A 602 O HOH A 853 1555 1555 2.44 LINK NA NA A 602 O HOH A 854 1555 1555 2.41 LINK NA NA A 602 O HOH A 911 1555 1555 2.51 LINK NA NA A 603 O HOH A 883 1555 1555 2.44 LINK NA NA A 603 O HOH A 886 1555 1555 2.56 LINK NA NA A 603 O HOH A 887 1555 1555 2.42 LINK NA NA A 603 O HOH A 903 1555 1555 2.43 LINK NA NA A 603 O HOH A 912 1555 1555 2.45 LINK NA NA A 603 O HOH A 914 1555 1555 2.41 LINK NA NA A 604 O HOH A 744 1555 1555 2.53 LINK NA NA A 604 O HOH A 850 1555 1555 2.63 LINK NA NA A 605 O HOH A 781 1555 12555 2.50 LINK NA NA A 605 O HOH A 812 1555 1555 2.62 LINK NA NA A 605 O HOH A 823 1555 1555 2.13 LINK NA NA A 605 O HOH A 839 1555 1555 2.29 LINK NA NA A 605 O HOH A 904 1555 1555 2.33 LINK NA NA A 606 O HOH A 760 1555 12555 2.37 LINK NA NA A 606 O HOH A 853 1555 1555 2.39 LINK NA NA A 606 O HOH A 854 1555 1555 2.47 SITE 1 AC1 5 GLU A 401 ASP A 427 ASP A 490 FMT A 610 SITE 2 AC1 5 FMT A 611 SITE 1 AC2 7 ASN A 406 NA A 606 HOH A 758 HOH A 834 SITE 2 AC2 7 HOH A 853 HOH A 854 HOH A 911 SITE 1 AC3 6 HOH A 883 HOH A 886 HOH A 887 HOH A 903 SITE 2 AC3 6 HOH A 912 HOH A 914 SITE 1 AC4 4 ASP A 427 ASN A 430 HOH A 744 HOH A 850 SITE 1 AC5 6 SER A 418 HOH A 781 HOH A 812 HOH A 823 SITE 2 AC5 6 HOH A 839 HOH A 904 SITE 1 AC6 4 NA A 602 HOH A 760 HOH A 853 HOH A 854 SITE 1 AC7 4 ARG A 440 TYR A 443 GLN A 499 HOH A 711 SITE 1 AC8 7 SER A 444 ASN A 445 GLN A 499 HOH A 718 SITE 2 AC8 7 HOH A 817 HOH A 887 HOH A 915 SITE 1 AC9 7 SER A 444 GLN A 446 THR A 498 GLN A 499 SITE 2 AC9 7 THR A 500 HOH A 718 HOH A 817 SITE 1 AD1 7 GLU A 401 ASP A 427 ASP A 490 ALA A 492 SITE 2 AD1 7 ASN A 494 NA A 601 HOH A 776 SITE 1 AD2 7 THR A 400 GLU A 401 ARG A 402 ASP A 427 SITE 2 AD2 7 ASN A 428 NA A 601 HOH A 704 CRYST1 92.083 92.083 143.928 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010860 0.006270 0.000000 0.00000 SCALE2 0.000000 0.012540 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006948 0.00000