HEADER TRANSFERASE/TRANSFERASE INHIBITOR 19-AUG-18 6EGA TITLE IRAK4 IN COMPLEX WITH A TYPE II INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN RESIDUES 154-460; COMPND 5 SYNONYM: IRAK-4,RENAL CARCINOMA ANTIGEN NY-REN-64; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IRAK4; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS INHIBITOR, COMPLEX, TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.WANG,H.WU REVDAT 5 13-MAR-24 6EGA 1 LINK REVDAT 4 18-DEC-19 6EGA 1 REMARK REVDAT 3 20-NOV-19 6EGA 1 LINK REVDAT 2 04-SEP-19 6EGA 1 JRNL REVDAT 1 20-FEB-19 6EGA 0 JRNL AUTH L.WANG,R.FERRAO,Q.LI,J.M.HATCHER,H.G.CHOI,S.J.BUHRLAGE, JRNL AUTH 2 N.S.GRAY,H.WU JRNL TITL CONFORMATIONAL FLEXIBILITY AND INHIBITOR BINDING TO JRNL TITL 2 UNPHOSPHORYLATED INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 JRNL TITL 3 (IRAK4). JRNL REF J.BIOL.CHEM. V. 294 4511 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30679311 JRNL DOI 10.1074/JBC.RA118.005428 REMARK 2 REMARK 2 RESOLUTION. 2.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 32264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.230 REMARK 3 FREE R VALUE : 0.267 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1646 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 73.3220 - 5.7509 1.00 2864 162 0.2059 0.2381 REMARK 3 2 5.7509 - 4.5649 1.00 2653 145 0.2059 0.2521 REMARK 3 3 4.5649 - 3.9879 1.00 2602 134 0.1864 0.2446 REMARK 3 4 3.9879 - 3.6233 1.00 2579 138 0.2131 0.2458 REMARK 3 5 3.6233 - 3.3636 1.00 2545 127 0.2379 0.2939 REMARK 3 6 3.3636 - 3.1653 1.00 2527 158 0.2721 0.2756 REMARK 3 7 3.1653 - 3.0068 1.00 2526 119 0.2819 0.2837 REMARK 3 8 3.0068 - 2.8759 1.00 2508 136 0.2867 0.3368 REMARK 3 9 2.8759 - 2.7651 1.00 2487 153 0.3230 0.3537 REMARK 3 10 2.7651 - 2.6697 1.00 2504 123 0.3491 0.4150 REMARK 3 11 2.6697 - 2.5862 1.00 2507 131 0.3823 0.3752 REMARK 3 12 2.5862 - 2.5123 0.93 2316 120 0.3642 0.3627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.050 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4412 REMARK 3 ANGLE : 0.867 5957 REMARK 3 CHIRALITY : 0.027 657 REMARK 3 PLANARITY : 0.003 763 REMARK 3 DIHEDRAL : 15.502 1697 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EGA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236271. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32497 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.510 REMARK 200 RESOLUTION RANGE LOW (A) : 143.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 35.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS-HCL PH 8.0 1.5M-1.6M REMARK 280 AMMONIUM SULFATE 20MM COBALT CHLORIDE, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 143.01367 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 286.02733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 214.52050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 357.53417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 71.50683 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 143.01367 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 286.02733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 357.53417 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 214.52050 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 71.50683 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -42.31450 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 73.29086 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -42.31450 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 73.29086 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 71.50683 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 71.50683 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 -42.31450 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 73.29086 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CO CO B 504 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 149 REMARK 465 ALA A 150 REMARK 465 MET A 151 REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 SER A 157 REMARK 465 LEU A 158 REMARK 465 GLU A 159 REMARK 465 VAL A 160 REMARK 465 SER A 161 REMARK 465 ASP A 162 REMARK 465 THR A 163 REMARK 465 ARG A 164 REMARK 465 PHE A 165 REMARK 465 GLY A 196 REMARK 465 PHE A 197 REMARK 465 ALA A 216 REMARK 465 ALA A 217 REMARK 465 MET A 218 REMARK 465 VAL A 219 REMARK 465 ASP A 220 REMARK 465 ILE A 221 REMARK 465 GLY A 255 REMARK 465 ASP A 256 REMARK 465 GLY A 331 REMARK 465 LEU A 332 REMARK 465 ALA A 333 REMARK 465 ARG A 334 REMARK 465 ALA A 335 REMARK 465 SER A 336 REMARK 465 GLU A 337 REMARK 465 LYS A 338 REMARK 465 PHE A 339 REMARK 465 ALA A 340 REMARK 465 GLN A 341 REMARK 465 THR A 342 REMARK 465 VAL A 343 REMARK 465 MET A 344 REMARK 465 THR A 345 REMARK 465 SER A 346 REMARK 465 ARG A 347 REMARK 465 ILE A 348 REMARK 465 SER A 460 REMARK 465 GLY B 149 REMARK 465 ALA B 150 REMARK 465 MET B 151 REMARK 465 GLY B 152 REMARK 465 SER B 153 REMARK 465 GLU B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 SER B 157 REMARK 465 LEU B 158 REMARK 465 GLU B 159 REMARK 465 VAL B 160 REMARK 465 SER B 161 REMARK 465 ASP B 162 REMARK 465 THR B 163 REMARK 465 MET B 218 REMARK 465 VAL B 219 REMARK 465 ASP B 220 REMARK 465 ILE B 221 REMARK 465 THR B 222 REMARK 465 THR B 223 REMARK 465 GLU B 224 REMARK 465 GLU B 225 REMARK 465 ASP B 256 REMARK 465 GLY B 331 REMARK 465 LEU B 332 REMARK 465 ALA B 333 REMARK 465 ARG B 334 REMARK 465 ALA B 335 REMARK 465 SER B 336 REMARK 465 GLU B 337 REMARK 465 LYS B 338 REMARK 465 PHE B 339 REMARK 465 ALA B 340 REMARK 465 GLN B 341 REMARK 465 THR B 342 REMARK 465 VAL B 343 REMARK 465 MET B 344 REMARK 465 THR B 345 REMARK 465 SER B 346 REMARK 465 ARG B 347 REMARK 465 ILE B 348 REMARK 465 SER B 460 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 223 -85.93 -99.53 REMARK 500 ARG A 310 -12.28 73.04 REMARK 500 THR A 352 -43.03 93.23 REMARK 500 LYS A 417 32.81 -88.89 REMARK 500 ASN B 207 41.17 37.77 REMARK 500 ARG B 310 -7.89 72.61 REMARK 500 ASP B 311 34.62 -140.32 REMARK 500 HIS B 390 45.16 -103.32 REMARK 500 LYS B 417 30.90 -83.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 506 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 306 NE2 REMARK 620 2 HIS B 306 NE2 11.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 504 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 166 NE2 REMARK 620 2 HIS B 166 NE2 0.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 503 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 286 NE2 REMARK 620 2 HIS B 286 NE2 0.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J8A A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue J8A B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 504 DBREF 6EGA A 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 DBREF 6EGA B 154 460 UNP Q9NWZ3 IRAK4_HUMAN 154 460 SEQADV 6EGA GLY A 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA ALA A 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA MET A 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA GLY A 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA SER A 153 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA GLY B 149 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA ALA B 150 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA MET B 151 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA GLY B 152 UNP Q9NWZ3 EXPRESSION TAG SEQADV 6EGA SER B 153 UNP Q9NWZ3 EXPRESSION TAG SEQRES 1 A 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 A 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 A 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 A 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 A 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 A 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 A 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 A 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 A 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 A 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 A 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 A 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 A 312 ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE SEQRES 14 A 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 A 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 A 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 A 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 A 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 A 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 A 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 A 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 A 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 A 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 A 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER SEQRES 1 B 312 GLY ALA MET GLY SER GLU ASN LYS SER LEU GLU VAL SER SEQRES 2 B 312 ASP THR ARG PHE HIS SER PHE SER PHE TYR GLU LEU LYS SEQRES 3 B 312 ASN VAL THR ASN ASN PHE ASP GLU ARG PRO ILE SER VAL SEQRES 4 B 312 GLY GLY ASN LYS MET GLY GLU GLY GLY PHE GLY VAL VAL SEQRES 5 B 312 TYR LYS GLY TYR VAL ASN ASN THR THR VAL ALA VAL LYS SEQRES 6 B 312 LYS LEU ALA ALA MET VAL ASP ILE THR THR GLU GLU LEU SEQRES 7 B 312 LYS GLN GLN PHE ASP GLN GLU ILE LYS VAL MET ALA LYS SEQRES 8 B 312 CYS GLN HIS GLU ASN LEU VAL GLU LEU LEU GLY PHE SER SEQRES 9 B 312 SER ASP GLY ASP ASP LEU CYS LEU VAL TYR VAL TYR MET SEQRES 10 B 312 PRO ASN GLY SER LEU LEU ASP ARG LEU SER CYS LEU ASP SEQRES 11 B 312 GLY THR PRO PRO LEU SER TRP HIS MET ARG CYS LYS ILE SEQRES 12 B 312 ALA GLN GLY ALA ALA ASN GLY ILE ASN PHE LEU HIS GLU SEQRES 13 B 312 ASN HIS HIS ILE HIS ARG ASP ILE LYS SER ALA ASN ILE SEQRES 14 B 312 LEU LEU ASP GLU ALA PHE THR ALA LYS ILE SER ASP PHE SEQRES 15 B 312 GLY LEU ALA ARG ALA SER GLU LYS PHE ALA GLN THR VAL SEQRES 16 B 312 MET THR SER ARG ILE VAL GLY THR THR ALA TYR MET ALA SEQRES 17 B 312 PRO GLU ALA LEU ARG GLY GLU ILE THR PRO LYS SER ASP SEQRES 18 B 312 ILE TYR SER PHE GLY VAL VAL LEU LEU GLU ILE ILE THR SEQRES 19 B 312 GLY LEU PRO ALA VAL ASP GLU HIS ARG GLU PRO GLN LEU SEQRES 20 B 312 LEU LEU ASP ILE LYS GLU GLU ILE GLU ASP GLU GLU LYS SEQRES 21 B 312 THR ILE GLU ASP TYR ILE ASP LYS LYS MET ASN ASP ALA SEQRES 22 B 312 ASP SER THR SER VAL GLU ALA MET TYR SER VAL ALA SER SEQRES 23 B 312 GLN CYS LEU HIS GLU LYS LYS ASN LYS ARG PRO ASP ILE SEQRES 24 B 312 LYS LYS VAL GLN GLN LEU LEU GLN GLU MET THR ALA SER HET J8A A 501 41 HET SO4 A 502 5 HET CO A 503 1 HET CO A 504 1 HET CO A 505 1 HET CO A 506 1 HET J8A B 501 41 HET SO4 B 502 5 HET CO B 503 1 HET CO B 504 1 HETNAM J8A 3-{2-[(CYCLOPROPANECARBONYL)AMINO][1,3]THIAZOLO[5,4- HETNAM 2 J8A B]PYRIDIN-5-YL}-N-{4-[(PIPERAZIN-1-YL)METHYL]-3- HETNAM 3 J8A (TRIFLUOROMETHYL)PHENYL}BENZAMIDE HETNAM SO4 SULFATE ION HETNAM CO COBALT (II) ION FORMUL 3 J8A 2(C29 H27 F3 N6 O2 S) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CO 6(CO 2+) FORMUL 13 HOH *44(H2 O) HELIX 1 AA1 SER A 169 THR A 177 1 9 HELIX 2 AA2 LEU A 226 CYS A 240 1 15 HELIX 3 AA3 SER A 269 SER A 275 1 7 HELIX 4 AA4 CYS A 276 THR A 280 5 5 HELIX 5 AA5 SER A 284 ASN A 305 1 22 HELIX 6 AA6 ALA A 356 GLY A 362 1 7 HELIX 7 AA7 THR A 365 GLY A 383 1 19 HELIX 8 AA8 LEU A 395 LEU A 397 5 3 HELIX 9 AA9 ASP A 398 ASP A 405 1 8 HELIX 10 AB1 THR A 409 TYR A 413 5 5 HELIX 11 AB2 ASP A 422 LEU A 437 1 16 HELIX 12 AB3 ASP A 446 ALA A 459 1 14 HELIX 13 AB4 SER B 169 THR B 177 1 9 HELIX 14 AB5 LYS B 227 CYS B 240 1 14 HELIX 15 AB6 SER B 269 SER B 275 1 7 HELIX 16 AB7 CYS B 276 THR B 280 5 5 HELIX 17 AB8 SER B 284 ASN B 305 1 22 HELIX 18 AB9 ALA B 356 ARG B 361 1 6 HELIX 19 AC1 THR B 365 GLY B 383 1 19 HELIX 20 AC2 LEU B 395 LEU B 397 5 3 HELIX 21 AC3 ASP B 398 ASP B 405 1 8 HELIX 22 AC4 THR B 409 TYR B 413 5 5 HELIX 23 AC5 ASP B 422 LEU B 437 1 16 HELIX 24 AC6 LYS B 440 ARG B 444 5 5 HELIX 25 AC7 ASP B 446 THR B 458 1 13 SHEET 1 AA1 5 LYS A 191 GLY A 193 0 SHEET 2 AA1 5 VAL A 199 VAL A 205 -1 O VAL A 200 N MET A 192 SHEET 3 AA1 5 THR A 208 LYS A 214 -1 O VAL A 210 N GLY A 203 SHEET 4 AA1 5 CYS A 259 VAL A 263 -1 O LEU A 260 N LYS A 213 SHEET 5 AA1 5 LEU A 248 SER A 252 -1 N LEU A 249 O VAL A 261 SHEET 1 AA2 2 ILE A 317 LEU A 319 0 SHEET 2 AA2 2 ALA A 325 ILE A 327 -1 O LYS A 326 N LEU A 318 SHEET 1 AA3 6 HIS B 166 SER B 167 0 SHEET 2 AA3 6 LEU B 248 SER B 252 1 O LEU B 249 N HIS B 166 SHEET 3 AA3 6 LEU B 258 VAL B 263 -1 O VAL B 261 N LEU B 249 SHEET 4 AA3 6 THR B 208 LEU B 215 -1 N ALA B 211 O TYR B 262 SHEET 5 AA3 6 VAL B 199 VAL B 205 -1 N TYR B 201 O VAL B 212 SHEET 6 AA3 6 LYS B 191 GLY B 193 -1 N MET B 192 O VAL B 200 SHEET 1 AA4 2 ILE B 317 LEU B 319 0 SHEET 2 AA4 2 ALA B 325 ILE B 327 -1 O LYS B 326 N LEU B 318 LINK NE2 HIS A 286 CO CO A 503 1555 1555 2.13 LINK NE2 HIS A 306 CO CO A 506 1555 1555 2.19 LINK NE2 HIS A 390 CO CO A 504 1555 1555 2.34 LINK CO CO A 505 NE2 HIS B 390 8665 1555 2.28 LINK CO CO A 506 NE2 HIS B 306 8565 1555 2.65 LINK NE2 HIS B 166 CO CO B 504 1555 1555 2.52 LINK NE2 HIS B 166 CO CO B 504 1555 10554 2.52 LINK NE2 HIS B 286 CO CO B 503 1555 1555 2.26 LINK NE2 HIS B 286 CO CO B 503 1555 10664 2.66 CISPEP 1 GLU A 194 GLY A 195 0 -5.50 CISPEP 2 GLU A 392 PRO A 393 0 4.45 CISPEP 3 GLY B 196 PHE B 197 0 4.05 CISPEP 4 GLU B 392 PRO B 393 0 2.34 SITE 1 AC1 19 MET A 192 ALA A 211 LYS A 213 GLU A 233 SITE 2 AC1 19 VAL A 236 VAL A 246 TYR A 262 VAL A 263 SITE 3 AC1 19 TYR A 264 MET A 265 GLY A 268 LEU A 302 SITE 4 AC1 19 ILE A 308 HIS A 309 LEU A 318 ILE A 327 SITE 5 AC1 19 SER A 328 ASP A 329 PHE A 330 SITE 1 AC2 3 THR A 365 LYS A 367 LYS A 441 SITE 1 AC3 1 HIS A 286 SITE 1 AC4 2 HIS A 390 LYS B 408 SITE 1 AC5 2 LYS A 408 HIS B 390 SITE 1 AC6 2 HIS A 306 HIS B 306 SITE 1 AC7 17 ALA B 211 LYS B 213 GLU B 233 MET B 237 SITE 2 AC7 17 VAL B 246 TYR B 262 VAL B 263 TYR B 264 SITE 3 AC7 17 MET B 265 GLY B 268 ILE B 308 HIS B 309 SITE 4 AC7 17 LEU B 318 ILE B 327 SER B 328 ASP B 329 SITE 5 AC7 17 PHE B 330 SITE 1 AC8 3 THR B 365 LYS B 367 LYS B 441 SITE 1 AC9 1 HIS B 286 SITE 1 AD1 2 HIS B 166 GLU B 172 CRYST1 84.629 84.629 429.041 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011816 0.006822 0.000000 0.00000 SCALE2 0.000000 0.013644 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002331 0.00000