HEADER MEMBRANE PROTEIN 13-SEP-17 6EHC TITLE OMPUDELTAN (N-TERMINUS DELETION MUTANT OF OMPU), OUTER MEMBRANE TITLE 2 PROTEIN OF VIBRIO CHOLERAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER MEMBRANE PROTEIN U; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PORIN OMPU; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THIS IS A N-TERMINAL DELETION MUTANT (FIRST 10 COMPND 7 RESDIUES DELETED) OF OMPU (OM PORIN) OF VIBRIO CHOLERAE. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39541 SOURCE 3 / CLASSICAL OGAWA 395 / O395); SOURCE 4 ORGANISM_TAXID: 345073; SOURCE 5 STRAIN: ATCC 39541 / CLASSICAL OGAWA 395 / O395; SOURCE 6 GENE: OMPU, VC0395_A0162, VC395_0650; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS OUTER MEMBRANE PROTEIN, PORIN, OMPF OR OMPC ORTHOLOG, ION-TRANSPORT, KEYWDS 2 MEMBRANE BETA BARREL, ION-CHANNEL, MEMBRANE PROTEIN, DIFFUSION KEYWDS 3 PORIN, DIFFUSION CHANNEL, NON-SPECIFIC PORIN. EXPDTA X-RAY DIFFRACTION AUTHOR B.VAN DEN BERG,M.PATHANIA REVDAT 3 17-JAN-24 6EHC 1 REMARK REVDAT 2 09-MAY-18 6EHC 1 JRNL REVDAT 1 25-APR-18 6EHC 0 JRNL AUTH M.PATHANIA,S.ACOSTA-GUTIERREZ,S.P.BHAMIDIMARRI,A.BASLE, JRNL AUTH 2 M.WINTERHALTER,M.CECCARELLI,B.VAN DEN BERG JRNL TITL UNUSUAL CONSTRICTION ZONES IN THE MAJOR PORINS OMPU AND OMPT JRNL TITL 2 FROM VIBRIO CHOLERAE. JRNL REF STRUCTURE V. 26 708 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29657131 JRNL DOI 10.1016/J.STR.2018.03.010 REMARK 2 REMARK 2 RESOLUTION. 2.02 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.02 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 46172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2419 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.02 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3403 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.2930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4714 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 97 REMARK 3 SOLVENT ATOMS : 256 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.74000 REMARK 3 B22 (A**2) : -1.74000 REMARK 3 B33 (A**2) : 5.64000 REMARK 3 B12 (A**2) : -0.87000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.152 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4902 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4323 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6585 ; 1.652 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10016 ; 0.943 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 614 ; 6.967 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;34.655 ;24.883 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 737 ;14.124 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;16.400 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.109 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5651 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1075 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2456 ; 3.011 ; 3.819 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2455 ; 3.009 ; 3.819 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3062 ; 4.209 ; 5.697 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3063 ; 4.209 ; 5.697 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2446 ; 3.636 ; 4.241 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2447 ; 3.636 ; 4.241 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3520 ; 5.392 ; 6.190 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4923 ; 7.164 ;43.031 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4924 ; 7.164 ;43.039 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EHC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006583. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.020 REMARK 200 RESOLUTION RANGE LOW (A) : 57.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.02 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6EHB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 33% PEG 300, 0.1 M NACL, 0.05 M REMARK 280 BICINE, PH 9.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 99.25000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 99.25000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 99.25000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 81.36000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 40.68000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 70.45983 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 301 REMARK 465 LYS A 302 REMARK 465 ASP B 301 REMARK 465 LYS B 302 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 134 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 134 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ASP A 278 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP A 310 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP B 73 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 134 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 317 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 120 -47.83 -139.53 REMARK 500 ALA A 126 49.37 -145.69 REMARK 500 ASP A 133 -96.45 -97.27 REMARK 500 SER A 178 -157.66 -129.72 REMARK 500 GLU A 182 42.94 -96.09 REMARK 500 ASP A 208 -120.36 45.01 REMARK 500 GLU A 222 -85.91 84.30 REMARK 500 ASN B 72 67.33 -151.52 REMARK 500 ASN B 81 76.78 -100.99 REMARK 500 TYR B 120 -49.67 -145.15 REMARK 500 ALA B 126 56.42 -150.08 REMARK 500 ASP B 133 -93.75 -100.81 REMARK 500 SER B 178 -152.94 -137.22 REMARK 500 GLU B 182 42.91 -93.52 REMARK 500 ASP B 208 -119.13 54.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 639 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH B 617 DISTANCE = 7.53 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 C8E A 401 REMARK 610 C8E A 402 REMARK 610 C8E A 403 REMARK 610 C8E A 404 REMARK 610 C8E A 405 REMARK 610 C8E A 406 REMARK 610 C8E B 401 REMARK 610 C8E B 402 REMARK 610 C8E B 403 REMARK 610 C8E B 404 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C8E B 403 DBREF 6EHC A 12 320 UNP A5F934 OMPU_VIBC3 33 341 DBREF 6EHC B 12 320 UNP A5F934 OMPU_VIBC3 33 341 SEQRES 1 A 309 SER THR VAL TYR SER ALA LYS GLY THR SER LEU GLU VAL SEQRES 2 A 309 GLY GLY ARG ALA GLU ALA ARG LEU SER LEU LYS ASP GLY SEQRES 3 A 309 LYS ALA GLN ASP ASN SER ARG VAL ARG LEU ASN PHE LEU SEQRES 4 A 309 GLY LYS ALA GLU ILE ASN ASP SER LEU TYR GLY VAL GLY SEQRES 5 A 309 PHE TYR GLU GLY GLU PHE THR THR ASN ASP GLN GLY LYS SEQRES 6 A 309 ASN ALA SER ASN ASN SER LEU ASP ASN ARG TYR THR TYR SEQRES 7 A 309 ALA GLY ILE GLY GLY THR TYR GLY GLU VAL THR TYR GLY SEQRES 8 A 309 LYS ASN ASP GLY ALA LEU GLY VAL ILE THR ASP PHE THR SEQRES 9 A 309 ASP ILE MET SER TYR HIS GLY ASN THR ALA ALA GLU LYS SEQRES 10 A 309 ILE ALA VAL ALA ASP ARG VAL ASP ASN MET LEU ALA TYR SEQRES 11 A 309 LYS GLY GLN PHE GLY ASP LEU GLY VAL LYS ALA SER TYR SEQRES 12 A 309 ARG PHE ALA ASP ARG ASN ALA VAL ASP ALA MET GLY ASN SEQRES 13 A 309 VAL VAL THR GLU THR ASN ALA ALA LYS TYR SER ASP ASN SEQRES 14 A 309 GLY GLU ASP GLY TYR SER LEU SER ALA ILE TYR THR PHE SEQRES 15 A 309 GLY ASP THR GLY PHE ASN VAL GLY ALA GLY TYR ALA ASP SEQRES 16 A 309 GLN ASP ASP GLN ASN GLU TYR MET LEU ALA ALA SER TYR SEQRES 17 A 309 ARG MET GLU ASN LEU TYR PHE ALA GLY LEU PHE THR ASP SEQRES 18 A 309 GLY GLU LEU ALA LYS ASP VAL ASP TYR THR GLY TYR GLU SEQRES 19 A 309 LEU ALA ALA GLY TYR LYS LEU GLY GLN ALA ALA PHE THR SEQRES 20 A 309 ALA THR TYR ASN ASN ALA GLU THR ALA LYS LYS THR SER SEQRES 21 A 309 ALA ASP ASN PHE ALA ILE ASP ALA THR TYR TYR PHE LYS SEQRES 22 A 309 PRO ASN PHE ARG SER TYR ILE SER TYR GLN PHE ASN LEU SEQRES 23 A 309 LEU ASP SER ASP LYS ALA SER LYS VAL ALA SER GLU ASP SEQRES 24 A 309 GLU LEU ALA ILE GLY LEU ARG TYR ASP PHE SEQRES 1 B 309 SER THR VAL TYR SER ALA LYS GLY THR SER LEU GLU VAL SEQRES 2 B 309 GLY GLY ARG ALA GLU ALA ARG LEU SER LEU LYS ASP GLY SEQRES 3 B 309 LYS ALA GLN ASP ASN SER ARG VAL ARG LEU ASN PHE LEU SEQRES 4 B 309 GLY LYS ALA GLU ILE ASN ASP SER LEU TYR GLY VAL GLY SEQRES 5 B 309 PHE TYR GLU GLY GLU PHE THR THR ASN ASP GLN GLY LYS SEQRES 6 B 309 ASN ALA SER ASN ASN SER LEU ASP ASN ARG TYR THR TYR SEQRES 7 B 309 ALA GLY ILE GLY GLY THR TYR GLY GLU VAL THR TYR GLY SEQRES 8 B 309 LYS ASN ASP GLY ALA LEU GLY VAL ILE THR ASP PHE THR SEQRES 9 B 309 ASP ILE MET SER TYR HIS GLY ASN THR ALA ALA GLU LYS SEQRES 10 B 309 ILE ALA VAL ALA ASP ARG VAL ASP ASN MET LEU ALA TYR SEQRES 11 B 309 LYS GLY GLN PHE GLY ASP LEU GLY VAL LYS ALA SER TYR SEQRES 12 B 309 ARG PHE ALA ASP ARG ASN ALA VAL ASP ALA MET GLY ASN SEQRES 13 B 309 VAL VAL THR GLU THR ASN ALA ALA LYS TYR SER ASP ASN SEQRES 14 B 309 GLY GLU ASP GLY TYR SER LEU SER ALA ILE TYR THR PHE SEQRES 15 B 309 GLY ASP THR GLY PHE ASN VAL GLY ALA GLY TYR ALA ASP SEQRES 16 B 309 GLN ASP ASP GLN ASN GLU TYR MET LEU ALA ALA SER TYR SEQRES 17 B 309 ARG MET GLU ASN LEU TYR PHE ALA GLY LEU PHE THR ASP SEQRES 18 B 309 GLY GLU LEU ALA LYS ASP VAL ASP TYR THR GLY TYR GLU SEQRES 19 B 309 LEU ALA ALA GLY TYR LYS LEU GLY GLN ALA ALA PHE THR SEQRES 20 B 309 ALA THR TYR ASN ASN ALA GLU THR ALA LYS LYS THR SER SEQRES 21 B 309 ALA ASP ASN PHE ALA ILE ASP ALA THR TYR TYR PHE LYS SEQRES 22 B 309 PRO ASN PHE ARG SER TYR ILE SER TYR GLN PHE ASN LEU SEQRES 23 B 309 LEU ASP SER ASP LYS ALA SER LYS VAL ALA SER GLU ASP SEQRES 24 B 309 GLU LEU ALA ILE GLY LEU ARG TYR ASP PHE HET C8E A 401 6 HET C8E A 402 7 HET C8E A 403 9 HET C8E A 404 7 HET C8E A 405 15 HET C8E A 406 8 HET C8E B 401 14 HET C8E B 402 10 HET C8E B 403 9 HET C8E B 404 12 HETNAM C8E (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE FORMUL 3 C8E 10(C16 H34 O5) FORMUL 13 HOH *256(H2 O) HELIX 1 AA1 LEU A 108 ASP A 113 1 6 HELIX 2 AA2 ILE A 129 ALA A 132 5 4 HELIX 3 AA3 SER A 304 GLU A 309 1 6 HELIX 4 AA4 LEU B 108 ASP B 113 1 6 HELIX 5 AA5 ILE B 129 ALA B 132 5 4 HELIX 6 AA6 THR B 170 ALA B 174 5 5 SHEET 1 AA1 7 LYS A 38 ASP A 41 0 SHEET 2 AA1 7 LEU A 22 LYS A 35 -1 N SER A 33 O GLN A 40 SHEET 3 AA1 7 ARG A 44 ASN A 56 -1 O ARG A 44 N GLU A 29 SHEET 4 AA1 7 LEU A 59 PHE A 69 -1 O GLY A 63 N GLY A 51 SHEET 5 AA1 7 LEU A 83 GLY A 94 -1 O TYR A 89 N PHE A 64 SHEET 6 AA1 7 GLY A 97 ASP A 105 -1 O VAL A 99 N ILE A 92 SHEET 7 AA1 7 ARG A 134 VAL A 135 -1 O VAL A 135 N ASN A 104 SHEET 1 AA215 LYS A 38 ASP A 41 0 SHEET 2 AA215 LEU A 22 LYS A 35 -1 N SER A 33 O GLN A 40 SHEET 3 AA215 GLU A 311 ASP A 319 -1 O LEU A 312 N LEU A 34 SHEET 4 AA215 PHE A 287 ASN A 296 -1 N ARG A 288 O ARG A 317 SHEET 5 AA215 LYS A 269 LYS A 284 -1 N PHE A 275 O PHE A 295 SHEET 6 AA215 ALA A 255 THR A 266 -1 N ALA A 256 O THR A 280 SHEET 7 AA215 VAL A 239 LEU A 252 -1 N TYR A 244 O ASN A 263 SHEET 8 AA215 LEU A 224 ALA A 236 -1 N THR A 231 O GLY A 243 SHEET 9 AA215 GLN A 210 MET A 221 -1 N TYR A 213 O ASP A 232 SHEET 10 AA215 PHE A 198 GLN A 207 -1 N GLN A 207 O GLN A 210 SHEET 11 AA215 GLY A 184 THR A 192 -1 N ALA A 189 O ALA A 202 SHEET 12 AA215 LEU A 148 ARG A 155 -1 N ARG A 155 O GLY A 184 SHEET 13 AA215 MET A 138 PHE A 145 -1 N TYR A 141 O ALA A 152 SHEET 14 AA215 GLY A 97 ASP A 105 -1 N GLU A 98 O LYS A 142 SHEET 15 AA215 ARG A 134 VAL A 135 -1 O VAL A 135 N ASN A 104 SHEET 1 AA3 2 ARG A 159 VAL A 162 0 SHEET 2 AA3 2 LYS A 176 ASP A 179 -1 O LYS A 176 N VAL A 162 SHEET 1 AA4 7 LYS B 38 ASP B 41 0 SHEET 2 AA4 7 GLU B 23 LYS B 35 -1 N SER B 33 O GLN B 40 SHEET 3 AA4 7 ARG B 44 ASN B 56 -1 O ARG B 44 N GLU B 29 SHEET 4 AA4 7 LEU B 59 PHE B 69 -1 O GLY B 61 N ALA B 53 SHEET 5 AA4 7 LEU B 83 GLY B 94 -1 O GLY B 93 N TYR B 60 SHEET 6 AA4 7 GLY B 97 ASP B 105 -1 O VAL B 99 N ILE B 92 SHEET 7 AA4 7 ARG B 134 VAL B 135 -1 O VAL B 135 N ASN B 104 SHEET 1 AA515 LYS B 38 ASP B 41 0 SHEET 2 AA515 GLU B 23 LYS B 35 -1 N SER B 33 O GLN B 40 SHEET 3 AA515 GLU B 311 ASP B 319 -1 O LEU B 312 N LEU B 34 SHEET 4 AA515 PHE B 287 ASN B 296 -1 N SER B 292 O ALA B 313 SHEET 5 AA515 LYS B 269 LYS B 284 -1 N PHE B 275 O PHE B 295 SHEET 6 AA515 ALA B 255 THR B 266 -1 N ASN B 262 O ASN B 274 SHEET 7 AA515 VAL B 239 LEU B 252 -1 N TYR B 250 O PHE B 257 SHEET 8 AA515 LEU B 224 ALA B 236 -1 N THR B 231 O GLY B 243 SHEET 9 AA515 GLN B 210 ARG B 220 -1 N ASN B 211 O GLU B 234 SHEET 10 AA515 PHE B 198 GLN B 207 -1 N GLY B 201 O ALA B 216 SHEET 11 AA515 GLY B 184 THR B 192 -1 N ALA B 189 O ALA B 202 SHEET 12 AA515 LEU B 148 ARG B 155 -1 N GLY B 149 O ILE B 190 SHEET 13 AA515 MET B 138 PHE B 145 -1 N LEU B 139 O TYR B 154 SHEET 14 AA515 GLY B 97 ASP B 105 -1 N GLU B 98 O LYS B 142 SHEET 15 AA515 ARG B 134 VAL B 135 -1 O VAL B 135 N ASN B 104 SHEET 1 AA6 2 ARG B 159 VAL B 162 0 SHEET 2 AA6 2 LYS B 176 ASP B 179 -1 O LYS B 176 N VAL B 162 SITE 1 AC1 1 TYR A 293 SITE 1 AC2 2 TYR A 185 HOH A 578 SITE 1 AC3 4 GLY A 203 LEU A 246 TYR A 261 ASP A 273 SITE 1 AC4 3 LEU B 246 ALA B 259 ASP B 273 SITE 1 AC5 3 PHE B 230 TYR B 293 HOH B 601 SITE 1 AC6 1 PHE B 275 CRYST1 81.360 81.360 198.500 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012291 0.007096 0.000000 0.00000 SCALE2 0.000000 0.014192 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005038 0.00000