HEADER MEMBRANE PROTEIN 19-SEP-17 6EID
TITLE CRYSTAL STRUCTURE OF WILD-TYPE CHANNELRHODOPSIN 2
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ARCHAEAL-TYPE OPSIN 2;
COMPND 3 CHAIN: A, B;
COMPND 4 SYNONYM: CHLAMYOPSIN 4 LIGHT-GATED ION CHANNEL,RETINAL BINDING
COMPND 5 PROTEIN,SENSORY OPSIN B;
COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII;
SOURCE 3 ORGANISM_TAXID: 3055;
SOURCE 4 GENE: COP4, ACOP2, COP4, CSOB, CHLREDRAFT_182032;
SOURCE 5 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE;
SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5689
KEYWDS RETINAL PROTEIN, ION TRANSPORT, MEMBRANE PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR V.BORSHCHEVSKIY,K.KOVALEV,O.VOLKOV,V.POLOVINKIN,E.MARIN,T.BALANDIN,
AUTHOR 2 R.ASTASHKIN,C.BAMANN,G.BUELDT,D.WILLLBOLD,A.POPOV,E.BAMBERG,
AUTHOR 3 V.GORDELIY
REVDAT 2 17-JAN-24 6EID 1 REMARK
REVDAT 1 06-DEC-17 6EID 0
JRNL AUTH O.VOLKOV,K.KOVALEV,V.POLOVINKIN,V.BORSHCHEVSKIY,C.BAMANN,
JRNL AUTH 2 R.ASTASHKIN,E.MARIN,A.POPOV,T.BALANDIN,D.WILLBOLD,G.BULDT,
JRNL AUTH 3 E.BAMBERG,V.GORDELIY
JRNL TITL STRUCTURAL INSIGHTS INTO ION CONDUCTION BY CHANNELRHODOPSIN
JRNL TITL 2 2.
JRNL REF SCIENCE V. 358 2017
JRNL REFN ESSN 1095-9203
JRNL PMID 29170206
JRNL DOI 10.1126/SCIENCE.AAN8862
REMARK 2
REMARK 2 RESOLUTION. 2.39 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0158
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : NULL
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.39
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 24535
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.209
REMARK 3 R VALUE (WORKING SET) : 0.209
REMARK 3 FREE R VALUE : 0.219
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000
REMARK 3 FREE R VALUE TEST SET COUNT : 1281
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.39
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1774
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79
REMARK 3 BIN R VALUE (WORKING SET) : 0.4550
REMARK 3 BIN FREE R VALUE SET COUNT : 100
REMARK 3 BIN FREE R VALUE : 0.3970
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3919
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 238
REMARK 3 SOLVENT ATOMS : 50
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.20
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.32000
REMARK 3 B22 (A**2) : -2.83000
REMARK 3 B33 (A**2) : 1.56000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.50000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.212
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.222
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.009
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL
REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : NULL
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6EID COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-17.
REMARK 100 THE DEPOSITION ID IS D_1200006658.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-NOV-16
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ESRF
REMARK 200 BEAMLINE : ID29
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.979
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL
REMARK 200 DATA SCALING SOFTWARE : XSCALE
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26159
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.390
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 34.60
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.39
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.48
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP
REMARK 200 STARTING MODEL: 3UG9
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 57.69
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.91
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POTASSIUM PHOSPHATE, LIPIDIC
REMARK 280 CUBIC PHASE, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 31.39000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.88500
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 31.39000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.88500
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1, 2
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 21720 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 54.73919
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 156.03295
REMARK 350
REMARK 350 BIOMOLECULE: 2
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22210 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 50.71879
REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 234.04943
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ASP A 2
REMARK 465 TYR A 3
REMARK 465 GLY A 4
REMARK 465 GLY A 5
REMARK 465 ALA A 6
REMARK 465 LEU A 7
REMARK 465 SER A 8
REMARK 465 ALA A 9
REMARK 465 VAL A 10
REMARK 465 GLY A 11
REMARK 465 ARG A 12
REMARK 465 GLU A 13
REMARK 465 LEU A 14
REMARK 465 LEU A 15
REMARK 465 PHE A 16
REMARK 465 VAL A 17
REMARK 465 THR A 18
REMARK 465 ASN A 19
REMARK 465 PRO A 20
REMARK 465 VAL A 21
REMARK 465 VAL A 22
REMARK 465 VAL A 23
REMARK 465 ASN A 24
REMARK 465 GLY A 25
REMARK 465 SER A 26
REMARK 465 VAL A 27
REMARK 465 LEU A 28
REMARK 465 VAL A 29
REMARK 465 PRO A 30
REMARK 465 GLU A 31
REMARK 465 ASP A 32
REMARK 465 ASP A 280
REMARK 465 ILE A 281
REMARK 465 ARG A 282
REMARK 465 LYS A 283
REMARK 465 THR A 284
REMARK 465 THR A 285
REMARK 465 LYS A 286
REMARK 465 LEU A 287
REMARK 465 ASN A 288
REMARK 465 ILE A 289
REMARK 465 GLY A 290
REMARK 465 GLY A 291
REMARK 465 THR A 292
REMARK 465 GLU A 293
REMARK 465 ILE A 294
REMARK 465 GLU A 295
REMARK 465 VAL A 296
REMARK 465 GLU A 297
REMARK 465 THR A 298
REMARK 465 LEU A 299
REMARK 465 VAL A 300
REMARK 465 GLU A 301
REMARK 465 ASP A 302
REMARK 465 GLU A 303
REMARK 465 ALA A 304
REMARK 465 GLU A 305
REMARK 465 ALA A 306
REMARK 465 GLY A 307
REMARK 465 ALA A 308
REMARK 465 VAL A 309
REMARK 465 ASN A 310
REMARK 465 LYS A 311
REMARK 465 GLY A 312
REMARK 465 THR A 313
REMARK 465 GLY A 314
REMARK 465 LYS A 315
REMARK 465 MET B 1
REMARK 465 ASP B 2
REMARK 465 TYR B 3
REMARK 465 GLY B 4
REMARK 465 GLY B 5
REMARK 465 ALA B 6
REMARK 465 LEU B 7
REMARK 465 SER B 8
REMARK 465 ALA B 9
REMARK 465 VAL B 10
REMARK 465 GLY B 11
REMARK 465 ARG B 12
REMARK 465 GLU B 13
REMARK 465 LEU B 14
REMARK 465 LEU B 15
REMARK 465 PHE B 16
REMARK 465 VAL B 17
REMARK 465 THR B 18
REMARK 465 ASN B 19
REMARK 465 PRO B 20
REMARK 465 VAL B 21
REMARK 465 VAL B 22
REMARK 465 VAL B 23
REMARK 465 ASN B 24
REMARK 465 GLY B 25
REMARK 465 SER B 26
REMARK 465 VAL B 27
REMARK 465 LEU B 28
REMARK 465 VAL B 29
REMARK 465 PRO B 30
REMARK 465 ARG B 282
REMARK 465 LYS B 283
REMARK 465 THR B 284
REMARK 465 THR B 285
REMARK 465 LYS B 286
REMARK 465 LEU B 287
REMARK 465 ASN B 288
REMARK 465 ILE B 289
REMARK 465 GLY B 290
REMARK 465 GLY B 291
REMARK 465 THR B 292
REMARK 465 GLU B 293
REMARK 465 ILE B 294
REMARK 465 GLU B 295
REMARK 465 VAL B 296
REMARK 465 GLU B 297
REMARK 465 THR B 298
REMARK 465 LEU B 299
REMARK 465 VAL B 300
REMARK 465 GLU B 301
REMARK 465 ASP B 302
REMARK 465 GLU B 303
REMARK 465 ALA B 304
REMARK 465 GLU B 305
REMARK 465 ALA B 306
REMARK 465 GLY B 307
REMARK 465 ALA B 308
REMARK 465 VAL B 309
REMARK 465 ASN B 310
REMARK 465 LYS B 311
REMARK 465 GLY B 312
REMARK 465 THR B 313
REMARK 465 GLY B 314
REMARK 465 LYS B 315
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 GLN A 33 CG CD OE1 NE2
REMARK 470 TYR A 35 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 TRP A 75 CG CD1 CD2 NE1 CE2 CE3 CZ2
REMARK 470 TRP A 75 CZ3 CH2
REMARK 470 LYS A 76 CG CD CE NZ
REMARK 470 THR A 78 OG1 CG2
REMARK 470 LYS A 103 CD CE NZ
REMARK 470 ARG A 147 NE CZ NH1 NH2
REMARK 470 LYS A 205 CD CE NZ
REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 273 CG CD OE1 OE2
REMARK 470 ASP B 32 CG OD1 OD2
REMARK 470 LYS B 76 CG CD CE NZ
REMARK 470 THR B 78 OG1 CG2
REMARK 470 LYS B 103 CD CE NZ
REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2
REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2
REMARK 470 ASP B 280 CB CG OD1 OD2
REMARK 470 ILE B 281 CB CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 SER A 77 -168.75 -161.53
REMARK 500 LYR A 257 -74.04 -91.67
REMARK 500 LYR A 257 -74.10 -91.54
REMARK 500 SER B 77 -139.26 -160.59
REMARK 500 LYR B 257 -72.35 -91.80
REMARK 500 LYR B 257 -67.94 -92.68
REMARK 500 ASP B 280 19.00 80.05
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 1101
REMARK 610 OLC A 1102
REMARK 610 OLC A 1103
REMARK 610 OLC A 1104
REMARK 610 OLC A 1105
REMARK 610 OLC A 1106
REMARK 610 OLC A 1107
REMARK 610 OLC A 1108
REMARK 610 OLC B 1101
REMARK 610 OLC B 1102
REMARK 610 OLC B 1103
REMARK 610 OLC B 1104
REMARK 610 OLC B 1105
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1104
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1105
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1106
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1107
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1108
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1109
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1110
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue EDT A 1111
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1101
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1102
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1103
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1104
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1105
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD8
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1106
REMARK 800
REMARK 800 SITE_IDENTIFIER: AD9
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1107
DBREF 6EID A 1 315 UNP Q8RUT8 Q8RUT8_CHLRE 1 315
DBREF 6EID B 1 315 UNP Q8RUT8 Q8RUT8_CHLRE 1 315
SEQRES 1 A 315 MET ASP TYR GLY GLY ALA LEU SER ALA VAL GLY ARG GLU
SEQRES 2 A 315 LEU LEU PHE VAL THR ASN PRO VAL VAL VAL ASN GLY SER
SEQRES 3 A 315 VAL LEU VAL PRO GLU ASP GLN CYS TYR CYS ALA GLY TRP
SEQRES 4 A 315 ILE GLU SER ARG GLY THR ASN GLY ALA GLN THR ALA SER
SEQRES 5 A 315 ASN VAL LEU GLN TRP LEU ALA ALA GLY PHE SER ILE LEU
SEQRES 6 A 315 LEU LEU MET PHE TYR ALA TYR GLN THR TRP LYS SER THR
SEQRES 7 A 315 CYS GLY TRP GLU GLU ILE TYR VAL CYS ALA ILE GLU MET
SEQRES 8 A 315 VAL LYS VAL ILE LEU GLU PHE PHE PHE GLU PHE LYS ASN
SEQRES 9 A 315 PRO SER MET LEU TYR LEU ALA THR GLY HIS ARG VAL GLN
SEQRES 10 A 315 TRP LEU ARG TYR ALA GLU TRP LEU LEU THR CYS PRO VAL
SEQRES 11 A 315 ILE LEU ILE HIS LEU SER ASN LEU THR GLY LEU SER ASN
SEQRES 12 A 315 ASP TYR SER ARG ARG THR MET GLY LEU LEU VAL SER ASP
SEQRES 13 A 315 ILE GLY THR ILE VAL TRP GLY ALA THR SER ALA MET ALA
SEQRES 14 A 315 THR GLY TYR VAL LYS VAL ILE PHE PHE CYS LEU GLY LEU
SEQRES 15 A 315 CYS TYR GLY ALA ASN THR PHE PHE HIS ALA ALA LYS ALA
SEQRES 16 A 315 TYR ILE GLU GLY TYR HIS THR VAL PRO LYS GLY ARG CYS
SEQRES 17 A 315 ARG GLN VAL VAL THR GLY MET ALA TRP LEU PHE PHE VAL
SEQRES 18 A 315 SER TRP GLY MET PHE PRO ILE LEU PHE ILE LEU GLY PRO
SEQRES 19 A 315 GLU GLY PHE GLY VAL LEU SER VAL TYR GLY SER THR VAL
SEQRES 20 A 315 GLY HIS THR ILE ILE ASP LEU MET SER LYR ASN CYS TRP
SEQRES 21 A 315 GLY LEU LEU GLY HIS TYR LEU ARG VAL LEU ILE HIS GLU
SEQRES 22 A 315 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS
SEQRES 23 A 315 LEU ASN ILE GLY GLY THR GLU ILE GLU VAL GLU THR LEU
SEQRES 24 A 315 VAL GLU ASP GLU ALA GLU ALA GLY ALA VAL ASN LYS GLY
SEQRES 25 A 315 THR GLY LYS
SEQRES 1 B 315 MET ASP TYR GLY GLY ALA LEU SER ALA VAL GLY ARG GLU
SEQRES 2 B 315 LEU LEU PHE VAL THR ASN PRO VAL VAL VAL ASN GLY SER
SEQRES 3 B 315 VAL LEU VAL PRO GLU ASP GLN CYS TYR CYS ALA GLY TRP
SEQRES 4 B 315 ILE GLU SER ARG GLY THR ASN GLY ALA GLN THR ALA SER
SEQRES 5 B 315 ASN VAL LEU GLN TRP LEU ALA ALA GLY PHE SER ILE LEU
SEQRES 6 B 315 LEU LEU MET PHE TYR ALA TYR GLN THR TRP LYS SER THR
SEQRES 7 B 315 CYS GLY TRP GLU GLU ILE TYR VAL CYS ALA ILE GLU MET
SEQRES 8 B 315 VAL LYS VAL ILE LEU GLU PHE PHE PHE GLU PHE LYS ASN
SEQRES 9 B 315 PRO SER MET LEU TYR LEU ALA THR GLY HIS ARG VAL GLN
SEQRES 10 B 315 TRP LEU ARG TYR ALA GLU TRP LEU LEU THR CYS PRO VAL
SEQRES 11 B 315 ILE LEU ILE HIS LEU SER ASN LEU THR GLY LEU SER ASN
SEQRES 12 B 315 ASP TYR SER ARG ARG THR MET GLY LEU LEU VAL SER ASP
SEQRES 13 B 315 ILE GLY THR ILE VAL TRP GLY ALA THR SER ALA MET ALA
SEQRES 14 B 315 THR GLY TYR VAL LYS VAL ILE PHE PHE CYS LEU GLY LEU
SEQRES 15 B 315 CYS TYR GLY ALA ASN THR PHE PHE HIS ALA ALA LYS ALA
SEQRES 16 B 315 TYR ILE GLU GLY TYR HIS THR VAL PRO LYS GLY ARG CYS
SEQRES 17 B 315 ARG GLN VAL VAL THR GLY MET ALA TRP LEU PHE PHE VAL
SEQRES 18 B 315 SER TRP GLY MET PHE PRO ILE LEU PHE ILE LEU GLY PRO
SEQRES 19 B 315 GLU GLY PHE GLY VAL LEU SER VAL TYR GLY SER THR VAL
SEQRES 20 B 315 GLY HIS THR ILE ILE ASP LEU MET SER LYR ASN CYS TRP
SEQRES 21 B 315 GLY LEU LEU GLY HIS TYR LEU ARG VAL LEU ILE HIS GLU
SEQRES 22 B 315 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS
SEQRES 23 B 315 LEU ASN ILE GLY GLY THR GLU ILE GLU VAL GLU THR LEU
SEQRES 24 B 315 VAL GLU ASP GLU ALA GLU ALA GLY ALA VAL ASN LYS GLY
SEQRES 25 B 315 THR GLY LYS
MODRES 6EID LYR A 257 LYS MODIFIED RESIDUE
MODRES 6EID LYR B 257 LYS MODIFIED RESIDUE
HET LYR A 257 58
HET LYR B 257 58
HET OLC A1101 16
HET OLC A1102 18
HET OLC A1103 18
HET OLC A1104 15
HET OLC A1105 18
HET OLC A1106 8
HET OLC A1107 4
HET OLC A1108 12
HET PO4 A1109 5
HET PO4 A1110 5
HET EDT A1111 20
HET OLC B1101 13
HET OLC B1102 21
HET OLC B1103 19
HET OLC B1104 18
HET OLC B1105 18
HET PO4 B1106 5
HET PO4 B1107 5
HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6-
HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8-
HETNAM 3 LYR TETRAENYL]LYSINE
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM PO4 PHOSPHATE ION
HETNAM EDT {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-
HETNAM 2 EDT AMINO}-ACETIC ACID
HETSYN OLC 1-OLEOYL-R-GLYCEROL
FORMUL 1 LYR 2(C26 H42 N2 O2)
FORMUL 3 OLC 13(C21 H40 O4)
FORMUL 11 PO4 4(O4 P 3-)
FORMUL 13 EDT C10 H16 N2 O8
FORMUL 21 HOH *50(H2 O)
HELIX 1 AA1 ALA A 37 GLU A 41 5 5
HELIX 2 AA2 THR A 45 SER A 77 1 33
HELIX 3 AA3 GLY A 80 GLU A 101 1 22
HELIX 4 AA4 GLN A 117 ASN A 137 1 21
HELIX 5 AA5 SER A 146 ALA A 169 1 24
HELIX 6 AA6 TYR A 172 VAL A 203 1 32
HELIX 7 AA7 GLY A 206 GLY A 233 1 28
HELIX 8 AA8 SER A 241 LYR A 257 1 17
HELIX 9 AA9 LYR A 257 GLY A 279 1 23
HELIX 10 AB1 ALA B 37 GLU B 41 5 5
HELIX 11 AB2 THR B 45 SER B 77 1 33
HELIX 12 AB3 GLY B 80 GLU B 101 1 22
HELIX 13 AB4 GLN B 117 ASN B 137 1 21
HELIX 14 AB5 SER B 146 ALA B 169 1 24
HELIX 15 AB6 TYR B 172 VAL B 203 1 32
HELIX 16 AB7 GLY B 206 GLY B 233 1 28
HELIX 17 AB8 SER B 241 LYR B 257 1 17
HELIX 18 AB9 LYR B 257 GLY B 279 1 23
SHEET 1 AA1 2 LEU A 108 TYR A 109 0
SHEET 2 AA1 2 ARG A 115 VAL A 116 -1 O VAL A 116 N LEU A 108
SHEET 1 AA2 2 LEU B 108 TYR B 109 0
SHEET 2 AA2 2 ARG B 115 VAL B 116 -1 O VAL B 116 N LEU B 108
SSBOND 1 CYS A 34 CYS A 36 1555 2657 2.03
SSBOND 2 CYS B 34 CYS B 36 1555 2658 2.01
LINK C SER A 256 N ALYR A 257 1555 1555 1.33
LINK C SER A 256 N BLYR A 257 1555 1555 1.33
LINK C ALYR A 257 N ASN A 258 1555 1555 1.33
LINK C BLYR A 257 N ASN A 258 1555 1555 1.33
LINK C SER B 256 N ALYR B 257 1555 1555 1.33
LINK C SER B 256 N BLYR B 257 1555 1555 1.33
LINK C ALYR B 257 N ASN B 258 1555 1555 1.34
LINK C BLYR B 257 N ASN B 258 1555 1555 1.34
CISPEP 1 ASN A 104 PRO A 105 0 3.40
CISPEP 2 ASN B 104 PRO B 105 0 3.45
SITE 1 AC1 2 PHE A 237 ALA B 186
SITE 1 AC2 3 THR A 45 ALA A 48 SER A 241
SITE 1 AC3 6 THR A 45 ASN A 46 GLY A 47 ALA A 48
SITE 2 AC3 6 ILE A 251 OLC A1108
SITE 1 AC4 6 LYS A 103 ASN A 104 SER A 106 LEU A 119
SITE 2 AC4 6 ALA A 122 PHE A 177
SITE 1 AC5 2 TRP A 217 ILE B 228
SITE 1 AC6 2 TRP A 81 ASN A 187
SITE 1 AC7 3 THR A 74 CYS A 79 TRP A 81
SITE 1 AC8 4 GLY A 47 THR A 50 ALA A 51 OLC A1103
SITE 1 AC9 3 ARG A 148 HIS A 191 LYS A 194
SITE 1 AD1 2 HIS A 201 ARG A 209
SITE 1 AD2 5 GLN A 49 ASN A 53 PHE A 98 PHE A 99
SITE 2 AD2 5 TYR A 243
SITE 1 AD3 3 ALA A 186 PHE B 178 PHE B 237
SITE 1 AD4 5 THR B 45 ALA B 48 LEU B 240 GLY B 244
SITE 2 AD4 5 OLC B1104
SITE 1 AD5 4 PHE B 100 LYS B 103 ASN B 104 ALA B 122
SITE 1 AD6 3 THR B 45 GLY B 47 OLC B1102
SITE 1 AD7 2 LEU A 240 TRP B 217
SITE 1 AD8 3 ARG B 148 HIS B 191 LYS B 194
SITE 1 AD9 3 HIS B 201 LYS B 205 ARG B 209
CRYST1 62.780 135.770 78.120 90.00 92.95 90.00 C 1 2 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.015929 0.000000 0.000820 0.00000
SCALE2 0.000000 0.007365 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012818 0.00000