HEADER MEMBRANE PROTEIN 19-SEP-17 6EIG TITLE CRYSTAL STRUCTURE OF N24Q/C128T MUTANT OF CHANNELRHODOPSIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARCHAEAL-TYPE OPSIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CHLAMYOPSIN 4 LIGHT-GATED ION CHANNEL,RETINAL BINDING COMPND 5 PROTEIN,SENSORY OPSIN B; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CHLAMYDOMONAS REINHARDTII; SOURCE 3 ORGANISM_TAXID: 3055; SOURCE 4 GENE: COP4, ACOP2, COP4, CSOB, CHLREDRAFT_182032; SOURCE 5 EXPRESSION_SYSTEM: LEISHMANIA TARENTOLAE; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 5689 KEYWDS RETINAL PROTEIN, ION TRANSPORT, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.KOVALEV,V.BORSHCHEVSKIY,O.VOLKOV,V.POLOVINKIN,E.MARIN,T.BALANDIN, AUTHOR 2 R.ASTASHKIN,C.BAMANN,G.BUELDT,D.WILLLBOLD,A.POPOV,E.BAMBERG, AUTHOR 3 V.GORDELIY REVDAT 2 17-JAN-24 6EIG 1 LINK REVDAT 1 06-DEC-17 6EIG 0 JRNL AUTH O.VOLKOV,K.KOVALEV,V.POLOVINKIN,V.BORSHCHEVSKIY,C.BAMANN, JRNL AUTH 2 R.ASTASHKIN,E.MARIN,A.POPOV,T.BALANDIN,D.WILLBOLD,G.BULDT, JRNL AUTH 3 E.BAMBERG,V.GORDELIY JRNL TITL STRUCTURAL INSIGHTS INTO ION CONDUCTION BY CHANNELRHODOPSIN JRNL TITL 2 2. JRNL REF SCIENCE V. 358 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 29170206 JRNL DOI 10.1126/SCIENCE.AAN8862 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 16688 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.266 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 860 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1231 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.4300 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3860 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3938 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 133 REMARK 3 SOLVENT ATOMS : 33 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.61000 REMARK 3 B22 (A**2) : -5.36000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.51000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 2.862 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.411 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.603 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.544 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.924 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4179 ; 0.003 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3886 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5651 ; 0.432 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8927 ; 0.406 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 496 ; 2.728 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 156 ;27.412 ;22.628 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 594 ;12.861 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;12.449 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 620 ; 0.030 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4520 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 950 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6EIG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006662. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17600 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.18300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.93700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6EID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM-POTASSIUM PHOSPHATES, LIPIDIC REMARK 280 CUBIC PHASE, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 32.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 67.03000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 32.25500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 67.03000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -0.30130 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.46942 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 TYR A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 5 REMARK 465 ALA A 6 REMARK 465 LEU A 7 REMARK 465 SER A 8 REMARK 465 ALA A 9 REMARK 465 VAL A 10 REMARK 465 GLY A 11 REMARK 465 ARG A 12 REMARK 465 GLU A 13 REMARK 465 LEU A 14 REMARK 465 LEU A 15 REMARK 465 PHE A 16 REMARK 465 VAL A 17 REMARK 465 THR A 18 REMARK 465 ASN A 19 REMARK 465 PRO A 20 REMARK 465 VAL A 21 REMARK 465 VAL A 22 REMARK 465 VAL A 23 REMARK 465 GLN A 24 REMARK 465 GLY A 25 REMARK 465 THR A 74 REMARK 465 TRP A 75 REMARK 465 LYS A 76 REMARK 465 SER A 77 REMARK 465 THR A 78 REMARK 465 CYS A 79 REMARK 465 ARG A 282 REMARK 465 LYS A 283 REMARK 465 THR A 284 REMARK 465 THR A 285 REMARK 465 LYS A 286 REMARK 465 LEU A 287 REMARK 465 ASN A 288 REMARK 465 ILE A 289 REMARK 465 GLY A 290 REMARK 465 GLY A 291 REMARK 465 THR A 292 REMARK 465 GLU A 293 REMARK 465 ILE A 294 REMARK 465 GLU A 295 REMARK 465 VAL A 296 REMARK 465 GLU A 297 REMARK 465 THR A 298 REMARK 465 LEU A 299 REMARK 465 VAL A 300 REMARK 465 GLU A 301 REMARK 465 ASP A 302 REMARK 465 GLU A 303 REMARK 465 ALA A 304 REMARK 465 GLU A 305 REMARK 465 ALA A 306 REMARK 465 GLY A 307 REMARK 465 ALA A 308 REMARK 465 VAL A 309 REMARK 465 ASN A 310 REMARK 465 LYS A 311 REMARK 465 GLY A 312 REMARK 465 THR A 313 REMARK 465 GLY A 314 REMARK 465 LYS A 315 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 TYR B 3 REMARK 465 GLY B 4 REMARK 465 GLY B 5 REMARK 465 ALA B 6 REMARK 465 LEU B 7 REMARK 465 SER B 8 REMARK 465 ALA B 9 REMARK 465 VAL B 10 REMARK 465 GLY B 11 REMARK 465 ARG B 12 REMARK 465 GLU B 13 REMARK 465 LEU B 14 REMARK 465 LEU B 15 REMARK 465 PHE B 16 REMARK 465 VAL B 17 REMARK 465 THR B 18 REMARK 465 ASN B 19 REMARK 465 PRO B 20 REMARK 465 VAL B 21 REMARK 465 VAL B 22 REMARK 465 VAL B 23 REMARK 465 GLN B 24 REMARK 465 GLY B 25 REMARK 465 TRP B 75 REMARK 465 LYS B 76 REMARK 465 SER B 77 REMARK 465 THR B 78 REMARK 465 CYS B 79 REMARK 465 GLY B 80 REMARK 465 ARG B 282 REMARK 465 LYS B 283 REMARK 465 THR B 284 REMARK 465 THR B 285 REMARK 465 LYS B 286 REMARK 465 LEU B 287 REMARK 465 ASN B 288 REMARK 465 ILE B 289 REMARK 465 GLY B 290 REMARK 465 GLY B 291 REMARK 465 THR B 292 REMARK 465 GLU B 293 REMARK 465 ILE B 294 REMARK 465 GLU B 295 REMARK 465 VAL B 296 REMARK 465 GLU B 297 REMARK 465 THR B 298 REMARK 465 LEU B 299 REMARK 465 VAL B 300 REMARK 465 GLU B 301 REMARK 465 ASP B 302 REMARK 465 GLU B 303 REMARK 465 ALA B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 GLY B 307 REMARK 465 ALA B 308 REMARK 465 VAL B 309 REMARK 465 ASN B 310 REMARK 465 LYS B 311 REMARK 465 GLY B 312 REMARK 465 THR B 313 REMARK 465 GLY B 314 REMARK 465 LYS B 315 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 26 OG REMARK 470 VAL A 27 CG1 CG2 REMARK 470 VAL A 29 CG1 CG2 REMARK 470 GLU A 31 CG CD OE1 OE2 REMARK 470 LYS A 103 CD CE NZ REMARK 470 ARG A 147 NE CZ NH1 NH2 REMARK 470 LYS A 205 CD CE NZ REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 ASP A 280 CG OD1 OD2 REMARK 470 ILE A 281 CG1 CG2 CD1 REMARK 470 SER B 26 OG REMARK 470 VAL B 27 CG1 CG2 REMARK 470 VAL B 29 CG1 CG2 REMARK 470 GLU B 31 CG CD OE1 OE2 REMARK 470 TYR B 72 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 147 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 207 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 280 CG OD1 OD2 REMARK 470 ILE B 281 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 235 O HOH B 1201 1.79 REMARK 500 OE1 GLN B 117 O HOH B 1201 1.99 REMARK 500 OH TYR B 85 O HOH B 1202 2.16 REMARK 500 OH TYR B 121 O HOH B 1203 2.18 REMARK 500 OE1 GLU A 235 O HOH A 1201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C3 OLC A 1103 C6 LFA A 1106 2555 1.01 REMARK 500 C7 OLC A 1103 C10 LFA A 1106 2555 1.04 REMARK 500 C5 OLC A 1103 C7 LFA A 1106 2555 1.81 REMARK 500 C7 OLC A 1103 C12 LFA A 1106 2555 1.81 REMARK 500 C8 OLC A 1103 C11 LFA A 1106 2555 1.85 REMARK 500 C8 OLC A 1103 C12 LFA A 1106 2555 1.85 REMARK 500 C9 OLC A 1103 C11 LFA A 1106 2555 1.91 REMARK 500 C10 OLC A 1103 C12 LFA A 1106 2555 1.99 REMARK 500 C12 OLC A 1103 C15 LFA A 1106 2555 2.12 REMARK 500 C10 OLC A 1103 C13 LFA A 1106 2555 2.12 REMARK 500 C9 OLC A 1103 C13 LFA A 1106 2555 2.13 REMARK 500 C4 OLC A 1103 C6 LFA A 1106 2555 2.14 REMARK 500 C7 OLC A 1103 C9 LFA A 1106 2555 2.14 REMARK 500 C8 OLC A 1103 C10 LFA A 1106 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 31 -133.45 51.71 REMARK 500 CYS A 36 116.91 -167.72 REMARK 500 LYR A 257 -78.25 -107.96 REMARK 500 GLU B 31 -123.56 48.17 REMARK 500 CYS B 36 129.59 -175.39 REMARK 500 PHE B 100 24.74 -141.16 REMARK 500 ASN B 137 54.18 -155.50 REMARK 500 LYR B 257 -80.95 -111.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 1101 REMARK 610 OLC A 1102 REMARK 610 OLC A 1103 REMARK 610 OLC A 1104 REMARK 610 LFA A 1106 REMARK 610 LFA A 1107 REMARK 610 OLC B 1101 REMARK 610 OLC B 1102 REMARK 610 OLC B 1103 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LFA A 1107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC B 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 1104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues OLC A 1103 and LFA A REMARK 800 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues OLC A 1103 and LFA A REMARK 800 1106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues OLC A 1103 and LFA A REMARK 800 1106 DBREF 6EIG A 1 315 UNP Q8RUT8 Q8RUT8_CHLRE 1 315 DBREF 6EIG B 1 315 UNP Q8RUT8 Q8RUT8_CHLRE 1 315 SEQADV 6EIG GLN A 24 UNP Q8RUT8 ASN 24 ENGINEERED MUTATION SEQADV 6EIG THR A 128 UNP Q8RUT8 CYS 128 ENGINEERED MUTATION SEQADV 6EIG GLN B 24 UNP Q8RUT8 ASN 24 ENGINEERED MUTATION SEQADV 6EIG THR B 128 UNP Q8RUT8 CYS 128 ENGINEERED MUTATION SEQRES 1 A 315 MET ASP TYR GLY GLY ALA LEU SER ALA VAL GLY ARG GLU SEQRES 2 A 315 LEU LEU PHE VAL THR ASN PRO VAL VAL VAL GLN GLY SER SEQRES 3 A 315 VAL LEU VAL PRO GLU ASP GLN CYS TYR CYS ALA GLY TRP SEQRES 4 A 315 ILE GLU SER ARG GLY THR ASN GLY ALA GLN THR ALA SER SEQRES 5 A 315 ASN VAL LEU GLN TRP LEU ALA ALA GLY PHE SER ILE LEU SEQRES 6 A 315 LEU LEU MET PHE TYR ALA TYR GLN THR TRP LYS SER THR SEQRES 7 A 315 CYS GLY TRP GLU GLU ILE TYR VAL CYS ALA ILE GLU MET SEQRES 8 A 315 VAL LYS VAL ILE LEU GLU PHE PHE PHE GLU PHE LYS ASN SEQRES 9 A 315 PRO SER MET LEU TYR LEU ALA THR GLY HIS ARG VAL GLN SEQRES 10 A 315 TRP LEU ARG TYR ALA GLU TRP LEU LEU THR THR PRO VAL SEQRES 11 A 315 ILE LEU ILE HIS LEU SER ASN LEU THR GLY LEU SER ASN SEQRES 12 A 315 ASP TYR SER ARG ARG THR MET GLY LEU LEU VAL SER ASP SEQRES 13 A 315 ILE GLY THR ILE VAL TRP GLY ALA THR SER ALA MET ALA SEQRES 14 A 315 THR GLY TYR VAL LYS VAL ILE PHE PHE CYS LEU GLY LEU SEQRES 15 A 315 CYS TYR GLY ALA ASN THR PHE PHE HIS ALA ALA LYS ALA SEQRES 16 A 315 TYR ILE GLU GLY TYR HIS THR VAL PRO LYS GLY ARG CYS SEQRES 17 A 315 ARG GLN VAL VAL THR GLY MET ALA TRP LEU PHE PHE VAL SEQRES 18 A 315 SER TRP GLY MET PHE PRO ILE LEU PHE ILE LEU GLY PRO SEQRES 19 A 315 GLU GLY PHE GLY VAL LEU SER VAL TYR GLY SER THR VAL SEQRES 20 A 315 GLY HIS THR ILE ILE ASP LEU MET SER LYR ASN CYS TRP SEQRES 21 A 315 GLY LEU LEU GLY HIS TYR LEU ARG VAL LEU ILE HIS GLU SEQRES 22 A 315 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS SEQRES 23 A 315 LEU ASN ILE GLY GLY THR GLU ILE GLU VAL GLU THR LEU SEQRES 24 A 315 VAL GLU ASP GLU ALA GLU ALA GLY ALA VAL ASN LYS GLY SEQRES 25 A 315 THR GLY LYS SEQRES 1 B 315 MET ASP TYR GLY GLY ALA LEU SER ALA VAL GLY ARG GLU SEQRES 2 B 315 LEU LEU PHE VAL THR ASN PRO VAL VAL VAL GLN GLY SER SEQRES 3 B 315 VAL LEU VAL PRO GLU ASP GLN CYS TYR CYS ALA GLY TRP SEQRES 4 B 315 ILE GLU SER ARG GLY THR ASN GLY ALA GLN THR ALA SER SEQRES 5 B 315 ASN VAL LEU GLN TRP LEU ALA ALA GLY PHE SER ILE LEU SEQRES 6 B 315 LEU LEU MET PHE TYR ALA TYR GLN THR TRP LYS SER THR SEQRES 7 B 315 CYS GLY TRP GLU GLU ILE TYR VAL CYS ALA ILE GLU MET SEQRES 8 B 315 VAL LYS VAL ILE LEU GLU PHE PHE PHE GLU PHE LYS ASN SEQRES 9 B 315 PRO SER MET LEU TYR LEU ALA THR GLY HIS ARG VAL GLN SEQRES 10 B 315 TRP LEU ARG TYR ALA GLU TRP LEU LEU THR THR PRO VAL SEQRES 11 B 315 ILE LEU ILE HIS LEU SER ASN LEU THR GLY LEU SER ASN SEQRES 12 B 315 ASP TYR SER ARG ARG THR MET GLY LEU LEU VAL SER ASP SEQRES 13 B 315 ILE GLY THR ILE VAL TRP GLY ALA THR SER ALA MET ALA SEQRES 14 B 315 THR GLY TYR VAL LYS VAL ILE PHE PHE CYS LEU GLY LEU SEQRES 15 B 315 CYS TYR GLY ALA ASN THR PHE PHE HIS ALA ALA LYS ALA SEQRES 16 B 315 TYR ILE GLU GLY TYR HIS THR VAL PRO LYS GLY ARG CYS SEQRES 17 B 315 ARG GLN VAL VAL THR GLY MET ALA TRP LEU PHE PHE VAL SEQRES 18 B 315 SER TRP GLY MET PHE PRO ILE LEU PHE ILE LEU GLY PRO SEQRES 19 B 315 GLU GLY PHE GLY VAL LEU SER VAL TYR GLY SER THR VAL SEQRES 20 B 315 GLY HIS THR ILE ILE ASP LEU MET SER LYR ASN CYS TRP SEQRES 21 B 315 GLY LEU LEU GLY HIS TYR LEU ARG VAL LEU ILE HIS GLU SEQRES 22 B 315 HIS ILE LEU ILE HIS GLY ASP ILE ARG LYS THR THR LYS SEQRES 23 B 315 LEU ASN ILE GLY GLY THR GLU ILE GLU VAL GLU THR LEU SEQRES 24 B 315 VAL GLU ASP GLU ALA GLU ALA GLY ALA VAL ASN LYS GLY SEQRES 25 B 315 THR GLY LYS MODRES 6EIG LYR A 257 LYS MODIFIED RESIDUE MODRES 6EIG LYR B 257 LYS MODIFIED RESIDUE HET LYR A 257 29 HET LYR B 257 29 HET OLC A1101 16 HET OLC A1102 17 HET OLC A1103 15 HET OLC A1104 12 HET PO4 A1105 5 HET LFA A1106 15 HET LFA A1107 4 HET OLC B1101 9 HET OLC B1102 16 HET OLC B1103 19 HET PO4 B1104 5 HETNAM LYR N~6~-[(2Z,4E,6E,8E)-3,7-DIMETHYL-9-(2,6,6- HETNAM 2 LYR TRIMETHYLCYCLOHEX-1-EN-1-YL)NONA-2,4,6,8- HETNAM 3 LYR TETRAENYL]LYSINE HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM PO4 PHOSPHATE ION HETNAM LFA EICOSANE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN LFA LIPID FRAGMENT FORMUL 1 LYR 2(C26 H42 N2 O2) FORMUL 3 OLC 7(C21 H40 O4) FORMUL 7 PO4 2(O4 P 3-) FORMUL 8 LFA 2(C20 H42) FORMUL 14 HOH *33(H2 O) HELIX 1 AA1 CYS A 36 GLU A 41 5 6 HELIX 2 AA2 THR A 45 GLN A 73 1 29 HELIX 3 AA3 TRP A 81 PHE A 100 1 20 HELIX 4 AA4 GLN A 117 ASN A 137 1 21 HELIX 5 AA5 SER A 146 ALA A 169 1 24 HELIX 6 AA6 TYR A 172 VAL A 203 1 32 HELIX 7 AA7 GLY A 206 GLY A 233 1 28 HELIX 8 AA8 SER A 241 LYR A 257 1 17 HELIX 9 AA9 LYR A 257 ILE A 275 1 19 HELIX 10 AB1 CYS B 36 GLU B 41 1 6 HELIX 11 AB2 THR B 45 THR B 74 1 30 HELIX 12 AB3 GLU B 82 GLU B 101 1 20 HELIX 13 AB4 GLN B 117 SER B 136 1 20 HELIX 14 AB5 SER B 146 ALA B 169 1 24 HELIX 15 AB6 GLY B 171 VAL B 203 1 33 HELIX 16 AB7 GLY B 206 GLY B 233 1 28 HELIX 17 AB8 SER B 241 LYR B 257 1 17 HELIX 18 AB9 LYR B 257 GLY B 279 1 23 SHEET 1 AA1 2 LEU A 108 TYR A 109 0 SHEET 2 AA1 2 ARG A 115 VAL A 116 -1 O VAL A 116 N LEU A 108 SHEET 1 AA2 2 LEU B 108 TYR B 109 0 SHEET 2 AA2 2 ARG B 115 VAL B 116 -1 O VAL B 116 N LEU B 108 SSBOND 1 CYS A 34 CYS A 36 1555 2555 2.56 SSBOND 2 CYS B 34 CYS B 36 1555 2556 2.94 LINK C SER A 256 N LYR A 257 1555 1555 1.33 LINK C LYR A 257 N ASN A 258 1555 1555 1.33 LINK C9 OLC A1103 C12 LFA A1106 1555 2555 1.45 LINK C7 OLC A1103 C11 LFA A1106 1555 2555 1.52 LINK C5 OLC A1103 C8 LFA A1106 1555 2555 1.53 LINK C SER B 256 N LYR B 257 1555 1555 1.33 LINK C LYR B 257 N ASN B 258 1555 1555 1.33 CISPEP 1 ASN A 104 PRO A 105 0 1.96 CISPEP 2 ASN B 104 PRO B 105 0 2.55 SITE 1 AC1 3 GLY A 236 PHE A 237 LYS B 194 SITE 1 AC2 4 THR A 45 ALA A 48 MET A 225 SER A 241 SITE 1 AC3 3 TRP A 217 LEU B 232 OLC B1102 SITE 1 AC4 2 ARG A 148 HIS A 191 SITE 1 AC5 2 VAL A 154 ASN A 187 SITE 1 AC6 1 GLY B 236 SITE 1 AC7 6 OLC A1104 THR B 45 LEU B 240 SER B 241 SITE 2 AC7 6 GLY B 244 GLY B 248 SITE 1 AC8 9 LYS B 93 PHE B 100 LYS B 103 ASN B 104 SITE 2 AC8 9 LEU B 119 ALA B 122 TRP B 162 THR B 165 SITE 3 AC8 9 PHE B 177 SITE 1 AC9 3 ARG B 148 HIS B 191 LYS B 194 SITE 1 AD1 13 VAL A 92 LEU A 96 PHE A 100 LYS A 103 SITE 2 AD1 13 ASN A 104 PRO A 105 SER A 106 LEU A 119 SITE 3 AD1 13 LEU A 126 TRP A 162 THR A 165 VAL A 173 SITE 4 AD1 13 PHE A 177 SITE 1 AD2 13 VAL A 92 LEU A 96 PHE A 100 LYS A 103 SITE 2 AD2 13 ASN A 104 PRO A 105 SER A 106 LEU A 119 SITE 3 AD2 13 LEU A 126 TRP A 162 THR A 165 VAL A 173 SITE 4 AD2 13 PHE A 177 SITE 1 AD3 13 VAL A 92 LEU A 96 PHE A 100 LYS A 103 SITE 2 AD3 13 ASN A 104 PRO A 105 SER A 106 LEU A 119 SITE 3 AD3 13 LEU A 126 TRP A 162 THR A 165 VAL A 173 SITE 4 AD3 13 PHE A 177 CRYST1 64.510 134.060 78.470 90.00 90.22 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015501 0.000000 0.000061 0.00000 SCALE2 0.000000 0.007459 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012744 0.00000