HEADER PEPTIDE BINDING PROTEIN 20-SEP-17 6EJ2 TITLE BACE1 COMPOUND 28 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-SECRETASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ASPARTYL PROTEASE 2,ASP 2,BETA-SITE AMYLOID PRECURSOR COMPND 5 PROTEIN CLEAVING ENZYME 1,BETA-SITE APP CLEAVING ENZYME 1,MEMAPSIN-2, COMPND 6 MEMBRANE-ASSOCIATED ASPARTIC PROTEASE 2; COMPND 7 EC: 3.4.23.46; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BACE1, BACE, KIAA1149; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BACE1, PROTEASE, ALZHEIMER, PEPTIDE BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.JOHANSSON REVDAT 2 09-MAY-18 6EJ2 1 JRNL REVDAT 1 18-APR-18 6EJ2 0 JRNL AUTH P.JOHANSSON,K.KASPERSSON,I.K.GURRELL,E.BACK,S.EKETJALL, JRNL AUTH 2 C.W.SCOTT,G.CEBERS,P.THORNE,M.J.MCKENZIE,H.BEATON,P.DAVEY, JRNL AUTH 3 K.KOLMODIN,J.HOLENZ,M.E.DUGGAN,S.BUDD HAEBERLEIN,R.W.BURLI JRNL TITL TOWARD BETA-SECRETASE-1 INHIBITORS WITH IMPROVED ISOFORM JRNL TITL 2 SELECTIVITY. JRNL REF J. MED. CHEM. V. 61 3491 2018 JRNL REFN ISSN 1520-4804 JRNL PMID 29617572 JRNL DOI 10.1021/ACS.JMEDCHEM.7B01716 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.2 REMARK 3 NUMBER OF REFLECTIONS : 74343 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3760 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.50 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.21 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1295 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.3033 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1218 REMARK 3 BIN R VALUE (WORKING SET) : 0.3038 REMARK 3 BIN FREE R VALUE : 0.2953 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.95 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 77 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2956 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 258 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.51860 REMARK 3 B22 (A**2) : -1.51860 REMARK 3 B33 (A**2) : 3.03720 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.259 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.076 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.077 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.074 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.075 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3084 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4207 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1022 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 69 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 453 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3084 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 398 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3664 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.02 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.46 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.07 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -15.0925 -40.9170 0.3879 REMARK 3 T TENSOR REMARK 3 T11: -0.0858 T22: -0.0305 REMARK 3 T33: -0.0437 T12: -0.0172 REMARK 3 T13: -0.0139 T23: 0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.8541 L22: 0.5653 REMARK 3 L33: 0.9541 L12: -0.3313 REMARK 3 L13: 0.4245 L23: -0.2170 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -0.0164 S13: -0.0008 REMARK 3 S21: 0.0206 S22: 0.0296 S23: 0.0202 REMARK 3 S31: -0.0119 S32: 0.0330 S33: -0.0044 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97242 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 88595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 48.680 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.16700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.46 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.51 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.01500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 5K MME, 0.2M AMI, 0.2M SODIUM REMARK 280 CITRATE PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.91000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.36500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 142.27500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.45500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.91000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.82000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 142.27500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.36500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.45500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1135 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1241 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 349 REMARK 465 ALA A 350 REMARK 465 GLN A 351 REMARK 465 ALA A 352 REMARK 465 LEU A 353 REMARK 465 PRO A 354 REMARK 465 TRP A 355 REMARK 465 LEU A 356 REMARK 465 LEU A 357 REMARK 465 LEU A 358 REMARK 465 TRP A 359 REMARK 465 MET A 360 REMARK 465 GLY A 361 REMARK 465 ALA A 362 REMARK 465 GLY A 363 REMARK 465 VAL A 364 REMARK 465 LEU A 365 REMARK 465 PRO A 366 REMARK 465 ALA A 367 REMARK 465 HIS A 368 REMARK 465 GLY A 369 REMARK 465 THR A 370 REMARK 465 GLN A 371 REMARK 465 HIS A 372 REMARK 465 GLY A 373 REMARK 465 ILE A 374 REMARK 465 ARG A 375 REMARK 465 LEU A 376 REMARK 465 PRO A 377 REMARK 465 LEU A 378 REMARK 465 ARG A 379 REMARK 465 SER A 380 REMARK 465 GLY A 381 REMARK 465 LEU A 382 REMARK 465 GLY A 383 REMARK 465 GLY A 384 REMARK 465 PRO A 386 REMARK 465 LEU A 387 REMARK 465 GLY A 388 REMARK 465 LEU A 389 REMARK 465 ARG A 390 REMARK 465 LEU A 391 REMARK 465 PRO A 392 REMARK 465 ARG A 393 REMARK 465 GLU A 394 REMARK 465 THR A 395 REMARK 465 ASP A 396 REMARK 465 GLU A 397 REMARK 465 GLU A 398 REMARK 465 PRO A 399 REMARK 465 GLU A 400 REMARK 465 GLU A 401 REMARK 465 PRO A 402 REMARK 465 GLY A 403 REMARK 465 ARG A 404 REMARK 465 ARG A 405 REMARK 465 GLY A 567 REMARK 465 PHE A 568 REMARK 465 PRO A 569 REMARK 465 LEU A 570 REMARK 465 ASN A 571 REMARK 465 GLN A 572 REMARK 465 SER A 573 REMARK 465 GLU A 574 REMARK 465 VAL A 575 REMARK 465 LEU A 576 REMARK 465 SER A 724 REMARK 465 GLN A 725 REMARK 465 ASN A 794 REMARK 465 ILE A 795 REMARK 465 PRO A 796 REMARK 465 GLN A 797 REMARK 465 THR A 798 REMARK 465 ASP A 799 REMARK 465 GLU A 800 REMARK 465 SER A 801 REMARK 465 THR A 802 REMARK 465 LEU A 803 REMARK 465 MET A 804 REMARK 465 THR A 805 REMARK 465 ILE A 806 REMARK 465 ALA A 807 REMARK 465 TYR A 808 REMARK 465 VAL A 809 REMARK 465 MET A 810 REMARK 465 ALA A 811 REMARK 465 ALA A 812 REMARK 465 ILE A 813 REMARK 465 CYS A 814 REMARK 465 ALA A 815 REMARK 465 LEU A 816 REMARK 465 PHE A 817 REMARK 465 MET A 818 REMARK 465 LEU A 819 REMARK 465 PRO A 820 REMARK 465 LEU A 821 REMARK 465 CYS A 822 REMARK 465 LEU A 823 REMARK 465 MET A 824 REMARK 465 VAL A 825 REMARK 465 CYS A 826 REMARK 465 GLN A 827 REMARK 465 TRP A 828 REMARK 465 ARG A 829 REMARK 465 CYS A 830 REMARK 465 LEU A 831 REMARK 465 ARG A 832 REMARK 465 CYS A 833 REMARK 465 LEU A 834 REMARK 465 ARG A 835 REMARK 465 GLN A 836 REMARK 465 GLN A 837 REMARK 465 HIS A 838 REMARK 465 ASP A 839 REMARK 465 ASP A 840 REMARK 465 PHE A 841 REMARK 465 ALA A 842 REMARK 465 ASP A 843 REMARK 465 ASP A 844 REMARK 465 ILE A 845 REMARK 465 SER A 846 REMARK 465 LEU A 847 REMARK 465 LEU A 848 REMARK 465 LYS A 849 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 578 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N ALA A 385 C TYR A 793 1.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 482 -14.42 124.11 REMARK 500 HIS A 498 49.25 -102.55 REMARK 500 PHE A 517 -64.16 -101.37 REMARK 500 TRP A 606 -83.05 -142.38 REMARK 500 SER A 662 -7.46 -57.49 REMARK 500 ALA A 681 -26.76 -31.77 REMARK 500 THR A 683 -127.51 -81.38 REMARK 500 THR A 684 104.95 88.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue B7E A 901 DBREF 6EJ2 A 349 849 UNP P56817 BACE1_HUMAN 1 501 SEQADV 6EJ2 ASP A 786 UNP P56817 LEU 438 CONFLICT SEQADV 6EJ2 LEU A 787 UNP P56817 ASP 439 CONFLICT SEQRES 1 A 501 MET ALA GLN ALA LEU PRO TRP LEU LEU LEU TRP MET GLY SEQRES 2 A 501 ALA GLY VAL LEU PRO ALA HIS GLY THR GLN HIS GLY ILE SEQRES 3 A 501 ARG LEU PRO LEU ARG SER GLY LEU GLY GLY ALA PRO LEU SEQRES 4 A 501 GLY LEU ARG LEU PRO ARG GLU THR ASP GLU GLU PRO GLU SEQRES 5 A 501 GLU PRO GLY ARG ARG GLY SER PHE VAL GLU MET VAL ASP SEQRES 6 A 501 ASN LEU ARG GLY LYS SER GLY GLN GLY TYR TYR VAL GLU SEQRES 7 A 501 MET THR VAL GLY SER PRO PRO GLN THR LEU ASN ILE LEU SEQRES 8 A 501 VAL ASP THR GLY SER SER ASN PHE ALA VAL GLY ALA ALA SEQRES 9 A 501 PRO HIS PRO PHE LEU HIS ARG TYR TYR GLN ARG GLN LEU SEQRES 10 A 501 SER SER THR TYR ARG ASP LEU ARG LYS GLY VAL TYR VAL SEQRES 11 A 501 PRO TYR THR GLN GLY LYS TRP GLU GLY GLU LEU GLY THR SEQRES 12 A 501 ASP LEU VAL SER ILE PRO HIS GLY PRO ASN VAL THR VAL SEQRES 13 A 501 ARG ALA ASN ILE ALA ALA ILE THR GLU SER ASP LYS PHE SEQRES 14 A 501 PHE ILE ASN GLY SER ASN TRP GLU GLY ILE LEU GLY LEU SEQRES 15 A 501 ALA TYR ALA GLU ILE ALA ARG PRO ASP ASP SER LEU GLU SEQRES 16 A 501 PRO PHE PHE ASP SER LEU VAL LYS GLN THR HIS VAL PRO SEQRES 17 A 501 ASN LEU PHE SER LEU GLN LEU CYS GLY ALA GLY PHE PRO SEQRES 18 A 501 LEU ASN GLN SER GLU VAL LEU ALA SER VAL GLY GLY SER SEQRES 19 A 501 MET ILE ILE GLY GLY ILE ASP HIS SER LEU TYR THR GLY SEQRES 20 A 501 SER LEU TRP TYR THR PRO ILE ARG ARG GLU TRP TYR TYR SEQRES 21 A 501 GLU VAL ILE ILE VAL ARG VAL GLU ILE ASN GLY GLN ASP SEQRES 22 A 501 LEU LYS MET ASP CYS LYS GLU TYR ASN TYR ASP LYS SER SEQRES 23 A 501 ILE VAL ASP SER GLY THR THR ASN LEU ARG LEU PRO LYS SEQRES 24 A 501 LYS VAL PHE GLU ALA ALA VAL LYS SER ILE LYS ALA ALA SEQRES 25 A 501 SER SER THR GLU LYS PHE PRO ASP GLY PHE TRP LEU GLY SEQRES 26 A 501 GLU GLN LEU VAL CYS TRP GLN ALA GLY THR THR PRO TRP SEQRES 27 A 501 ASN ILE PHE PRO VAL ILE SER LEU TYR LEU MET GLY GLU SEQRES 28 A 501 VAL THR ASN GLN SER PHE ARG ILE THR ILE LEU PRO GLN SEQRES 29 A 501 GLN TYR LEU ARG PRO VAL GLU ASP VAL ALA THR SER GLN SEQRES 30 A 501 ASP ASP CYS TYR LYS PHE ALA ILE SER GLN SER SER THR SEQRES 31 A 501 GLY THR VAL MET GLY ALA VAL ILE MET GLU GLY PHE TYR SEQRES 32 A 501 VAL VAL PHE ASP ARG ALA ARG LYS ARG ILE GLY PHE ALA SEQRES 33 A 501 VAL SER ALA CYS HIS VAL HIS ASP GLU PHE ARG THR ALA SEQRES 34 A 501 ALA VAL GLU GLY PRO PHE VAL THR ASP LEU MET GLU ASP SEQRES 35 A 501 CYS GLY TYR ASN ILE PRO GLN THR ASP GLU SER THR LEU SEQRES 36 A 501 MET THR ILE ALA TYR VAL MET ALA ALA ILE CYS ALA LEU SEQRES 37 A 501 PHE MET LEU PRO LEU CYS LEU MET VAL CYS GLN TRP ARG SEQRES 38 A 501 CYS LEU ARG CYS LEU ARG GLN GLN HIS ASP ASP PHE ALA SEQRES 39 A 501 ASP ASP ILE SER LEU LEU LYS HET B7E A 901 30 HETNAM B7E COMPOUND 28 FORMUL 2 B7E C22 H26 N4 O2 FORMUL 3 HOH *258(H2 O) HELIX 1 AA1 PHE A 408 VAL A 409 5 2 HELIX 2 AA2 GLU A 410 VAL A 412 5 3 HELIX 3 AA3 GLN A 462 SER A 466 5 5 HELIX 4 AA4 TYR A 532 ALA A 536 5 5 HELIX 5 AA5 PRO A 544 THR A 553 1 10 HELIX 6 AA6 ASP A 589 SER A 591 5 3 HELIX 7 AA7 ASP A 625 TYR A 631 5 7 HELIX 8 AA8 LYS A 647 SER A 661 1 15 HELIX 9 AA9 PRO A 667 LEU A 672 1 6 HELIX 10 AB1 PRO A 685 PHE A 689 5 5 HELIX 11 AB2 LEU A 710 TYR A 714 1 5 HELIX 12 AB3 GLY A 743 GLU A 748 1 6 HELIX 13 AB4 ARG A 756 ARG A 758 5 3 HELIX 14 AB5 LEU A 787 GLY A 792 5 6 SHEET 1 AA1 9 ARG A 470 TYR A 480 0 SHEET 2 AA1 9 GLY A 483 SER A 495 -1 O TRP A 485 N VAL A 478 SHEET 3 AA1 9 TYR A 423 VAL A 429 -1 N THR A 428 O SER A 495 SHEET 4 AA1 9 LEU A 415 LYS A 418 -1 N ARG A 416 O TYR A 424 SHEET 5 AA1 9 SER A 578 ILE A 585 -1 O VAL A 579 N GLY A 417 SHEET 6 AA1 9 PHE A 559 GLY A 565 -1 N GLN A 562 O SER A 582 SHEET 7 AA1 9 PHE A 750 ASP A 755 -1 O PHE A 754 N PHE A 559 SHEET 8 AA1 9 ARG A 760 SER A 766 -1 O ALA A 764 N TYR A 751 SHEET 9 AA1 9 TYR A 593 PRO A 601 -1 N THR A 600 O ILE A 761 SHEET 1 AA213 ARG A 470 TYR A 480 0 SHEET 2 AA213 GLY A 483 SER A 495 -1 O TRP A 485 N VAL A 478 SHEET 3 AA213 VAL A 504 ASP A 515 -1 O ILE A 508 N GLY A 490 SHEET 4 AA213 PHE A 447 GLY A 450 1 N VAL A 449 O ILE A 511 SHEET 5 AA213 GLY A 526 GLY A 529 -1 O ILE A 527 N ALA A 448 SHEET 6 AA213 GLN A 434 ASP A 441 1 N LEU A 439 O LEU A 528 SHEET 7 AA213 TYR A 423 VAL A 429 -1 N VAL A 425 O ILE A 438 SHEET 8 AA213 LEU A 415 LYS A 418 -1 N ARG A 416 O TYR A 424 SHEET 9 AA213 SER A 578 ILE A 585 -1 O VAL A 579 N GLY A 417 SHEET 10 AA213 PHE A 559 GLY A 565 -1 N GLN A 562 O SER A 582 SHEET 11 AA213 PHE A 750 ASP A 755 -1 O PHE A 754 N PHE A 559 SHEET 12 AA213 ARG A 760 SER A 766 -1 O ALA A 764 N TYR A 751 SHEET 13 AA213 TYR A 593 PRO A 601 -1 N THR A 600 O ILE A 761 SHEET 1 AA3 5 GLU A 609 VAL A 610 0 SHEET 2 AA3 5 SER A 634 VAL A 636 -1 O SER A 634 N VAL A 610 SHEET 3 AA3 5 THR A 740 MET A 742 1 O MET A 742 N ILE A 635 SHEET 4 AA3 5 LEU A 643 PRO A 646 -1 N ARG A 644 O VAL A 741 SHEET 5 AA3 5 ILE A 733 SER A 736 1 O SER A 734 N LEU A 645 SHEET 1 AA4 5 GLN A 620 ASP A 621 0 SHEET 2 AA4 5 ILE A 612 ILE A 617 -1 N ILE A 617 O GLN A 620 SHEET 3 AA4 5 ILE A 692 MET A 697 -1 O TYR A 695 N ARG A 614 SHEET 4 AA4 5 GLN A 703 ILE A 709 -1 O ILE A 709 N ILE A 692 SHEET 5 AA4 5 ALA A 778 VAL A 784 -1 O GLU A 780 N ARG A 706 SHEET 1 AA5 3 VAL A 677 TRP A 679 0 SHEET 2 AA5 3 ASP A 727 PHE A 731 -1 O TYR A 729 N VAL A 677 SHEET 3 AA5 3 LEU A 715 VAL A 718 -1 N VAL A 718 O CYS A 728 SSBOND 1 CYS A 564 CYS A 768 1555 1555 2.04 SSBOND 2 CYS A 626 CYS A 791 1555 1555 2.03 SSBOND 3 CYS A 678 CYS A 728 1555 1555 2.04 CISPEP 1 SER A 431 PRO A 432 0 -0.41 CISPEP 2 ARG A 537 PRO A 538 0 4.12 CISPEP 3 TYR A 631 ASP A 632 0 3.56 CISPEP 4 GLY A 781 PRO A 782 0 -3.32 SITE 1 AC1 14 GLY A 420 GLN A 421 GLY A 422 LEU A 439 SITE 2 AC1 14 ASP A 441 ASN A 446 VAL A 478 TRP A 485 SITE 3 AC1 14 ILE A 519 ILE A 527 ARG A 537 ASP A 637 SITE 4 AC1 14 GLY A 639 HOH A1108 CRYST1 101.580 101.580 170.730 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009844 0.005684 0.000000 0.00000 SCALE2 0.000000 0.011367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005857 0.00000