HEADER TRANSFERASE 20-SEP-17 6EJD TITLE HUMAN XYLOSYLTRANSFERASE 1 IN COMPLEX WITH PEPTIDE QEEEGSGGPQGG COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSYLTRANSFERASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 232-959; COMPND 5 SYNONYM: PEPTIDE O-XYLOSYLTRANSFERASE 1,XYLOSYLTRANSFERASE I,XYLT-I; COMPND 6 EC: 2.4.2.26; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: PROTEIN AMBP; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 210-221; COMPND 12 SYNONYM: BIKUNIN; COMPND 13 ENGINEERED: YES; COMPND 14 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: XYLT1, XT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293FS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCEP-PU; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS PROTEOGLYCAN, GLYCOSYLTRANSFERASE, GOLGI, XYLOSYLTRANSFERASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.BRIGGS,E.HOHENESTER REVDAT 3 17-JAN-24 6EJD 1 REMARK REVDAT 2 13-JUN-18 6EJD 1 JRNL REVDAT 1 02-MAY-18 6EJD 0 JRNL AUTH D.C.BRIGGS,E.HOHENESTER JRNL TITL STRUCTURAL BASIS FOR THE INITIATION OF GLYCOSAMINOGLYCAN JRNL TITL 2 BIOSYNTHESIS BY HUMAN XYLOSYLTRANSFERASE 1. JRNL REF STRUCTURE V. 26 801 2018 JRNL REFN ISSN 1878-4186 JRNL PMID 29681470 JRNL DOI 10.1016/J.STR.2018.03.014 REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.83 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 25949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 1258 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.8436 - 5.5812 1.00 2944 142 0.2211 0.2262 REMARK 3 2 5.5812 - 4.4304 1.00 2804 134 0.1922 0.2527 REMARK 3 3 4.4304 - 3.8705 1.00 2766 152 0.1988 0.2430 REMARK 3 4 3.8705 - 3.5166 1.00 2721 163 0.2286 0.2650 REMARK 3 5 3.5166 - 3.2646 1.00 2748 128 0.2594 0.3105 REMARK 3 6 3.2646 - 3.0721 1.00 2738 118 0.2960 0.3168 REMARK 3 7 3.0721 - 2.9183 1.00 2721 143 0.3073 0.3451 REMARK 3 8 2.9183 - 2.7912 1.00 2719 144 0.3328 0.3501 REMARK 3 9 2.7912 - 2.6838 0.94 2530 134 0.3531 0.3910 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.510 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.81 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5694 REMARK 3 ANGLE : 0.734 7761 REMARK 3 CHIRALITY : 0.047 834 REMARK 3 PLANARITY : 0.005 1000 REMARK 3 DIHEDRAL : 11.197 3358 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 308 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7261 13.0523 55.9285 REMARK 3 T TENSOR REMARK 3 T11: 0.2407 T22: 0.4559 REMARK 3 T33: 0.6256 T12: -0.0004 REMARK 3 T13: -0.0026 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.4251 L22: 1.2720 REMARK 3 L33: 0.6692 L12: -0.1294 REMARK 3 L13: -0.1795 L23: -0.1256 REMARK 3 S TENSOR REMARK 3 S11: -0.1247 S12: 0.0454 S13: -0.3859 REMARK 3 S21: 0.1218 S22: 0.1434 S23: 0.4701 REMARK 3 S31: -0.0132 S32: -0.3725 S33: 0.0071 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 318 THROUGH 383 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0902 31.5351 48.8775 REMARK 3 T TENSOR REMARK 3 T11: 0.2123 T22: 0.1046 REMARK 3 T33: 0.3641 T12: -0.0069 REMARK 3 T13: 0.0061 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.8259 L22: 1.7836 REMARK 3 L33: 0.4225 L12: -0.7614 REMARK 3 L13: -0.2683 L23: 0.2319 REMARK 3 S TENSOR REMARK 3 S11: 0.0201 S12: 0.0672 S13: -0.2975 REMARK 3 S21: -0.1913 S22: -0.0065 S23: -0.2188 REMARK 3 S31: -0.1028 S32: 0.1735 S33: 0.0094 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 384 THROUGH 598 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5718 18.9409 59.5097 REMARK 3 T TENSOR REMARK 3 T11: 0.1958 T22: 0.1734 REMARK 3 T33: 0.3546 T12: 0.0464 REMARK 3 T13: 0.0130 T23: 0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.8742 L22: 1.9118 REMARK 3 L33: 0.9030 L12: 0.2818 REMARK 3 L13: 0.1717 L23: 0.1495 REMARK 3 S TENSOR REMARK 3 S11: 0.0061 S12: -0.1212 S13: -0.1753 REMARK 3 S21: 0.1263 S22: -0.0098 S23: 0.0167 REMARK 3 S31: 0.1008 S32: -0.1019 S33: 0.0179 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 599 THROUGH 645 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5548 44.4874 58.7051 REMARK 3 T TENSOR REMARK 3 T11: 0.2171 T22: 0.1455 REMARK 3 T33: 0.2939 T12: -0.0033 REMARK 3 T13: -0.0745 T23: -0.0467 REMARK 3 L TENSOR REMARK 3 L11: 2.6035 L22: 1.1266 REMARK 3 L33: 1.2218 L12: -0.1549 REMARK 3 L13: 0.3467 L23: -0.3284 REMARK 3 S TENSOR REMARK 3 S11: -0.0803 S12: -0.1078 S13: -0.1014 REMARK 3 S21: 0.1722 S22: 0.1056 S23: -0.1661 REMARK 3 S31: -0.0471 S32: 0.1320 S33: -0.0435 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 646 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9504 63.9239 54.8211 REMARK 3 T TENSOR REMARK 3 T11: 0.3061 T22: 0.1349 REMARK 3 T33: 0.3250 T12: 0.0242 REMARK 3 T13: -0.0654 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 0.7682 L22: 0.8261 REMARK 3 L33: 1.7003 L12: 0.0993 REMARK 3 L13: -0.1582 L23: -0.1974 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.1123 S13: 0.1927 REMARK 3 S21: 0.0713 S22: 0.0161 S23: 0.0147 REMARK 3 S31: -0.3302 S32: -0.0441 S33: 0.0052 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 737 THROUGH 808 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4640 49.6908 77.3373 REMARK 3 T TENSOR REMARK 3 T11: 0.3433 T22: 0.2288 REMARK 3 T33: 0.3088 T12: -0.0759 REMARK 3 T13: 0.0788 T23: -0.0857 REMARK 3 L TENSOR REMARK 3 L11: 3.1892 L22: 2.6364 REMARK 3 L33: 1.9666 L12: -0.9470 REMARK 3 L13: -0.3201 L23: -0.3995 REMARK 3 S TENSOR REMARK 3 S11: 0.1709 S12: -0.2460 S13: -0.2087 REMARK 3 S21: 0.3331 S22: -0.2583 S23: 0.4628 REMARK 3 S31: -0.0736 S32: -0.0013 S33: 0.1269 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 809 THROUGH 856 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.6989 58.6495 68.6393 REMARK 3 T TENSOR REMARK 3 T11: 0.3392 T22: 0.3681 REMARK 3 T33: 0.4684 T12: 0.0987 REMARK 3 T13: 0.0373 T23: -0.1280 REMARK 3 L TENSOR REMARK 3 L11: 1.8610 L22: 1.7137 REMARK 3 L33: 1.5997 L12: 0.0008 REMARK 3 L13: 0.4567 L23: -0.7910 REMARK 3 S TENSOR REMARK 3 S11: 0.1749 S12: -0.1815 S13: 0.1451 REMARK 3 S21: 0.0333 S22: -0.2114 S23: 0.4298 REMARK 3 S31: -0.3703 S32: -0.4337 S33: 0.0967 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 857 THROUGH 959 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.5997 60.7945 60.6254 REMARK 3 T TENSOR REMARK 3 T11: 0.3013 T22: 0.2546 REMARK 3 T33: 0.3160 T12: 0.0286 REMARK 3 T13: -0.0905 T23: -0.0666 REMARK 3 L TENSOR REMARK 3 L11: 1.6771 L22: 2.0412 REMARK 3 L33: 1.6456 L12: -0.0386 REMARK 3 L13: -0.6586 L23: 0.0780 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.0083 S13: 0.1043 REMARK 3 S21: 0.0766 S22: -0.0022 S23: 0.1964 REMARK 3 S31: -0.4396 S32: -0.2653 S33: 0.0783 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 211 THROUGH 219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3717 21.5801 70.8950 REMARK 3 T TENSOR REMARK 3 T11: 0.6305 T22: 0.4502 REMARK 3 T33: 0.6376 T12: 0.1505 REMARK 3 T13: -0.2136 T23: -0.1459 REMARK 3 L TENSOR REMARK 3 L11: 0.9835 L22: 0.7881 REMARK 3 L33: 1.8984 L12: 0.8793 REMARK 3 L13: 1.3910 L23: 1.2096 REMARK 3 S TENSOR REMARK 3 S11: -0.0837 S12: -0.6672 S13: 0.1090 REMARK 3 S21: 0.4198 S22: -0.0436 S23: -0.0717 REMARK 3 S31: -0.1204 S32: -0.3004 S33: 0.0829 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EJD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-SEP-17. REMARK 100 THE DEPOSITION ID IS D_1200006695. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.31 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26012 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 61.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.22700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 1.08500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2GAK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 55-65% MORPHEUS PRECIPITANT MIX 2 REMARK 280 (PEG8000 AND ETHYLENE GLYCOL) 0.1M BICINE/TRIS BUFFER AT PH 7.5 REMARK 280 0.1M OF NPS MIX (0.033M OF EACH), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.76900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.81450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.67300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.81450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.76900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.67300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 209 REMARK 465 PRO A 210 REMARK 465 LEU A 211 REMARK 465 VAL A 212 REMARK 465 HIS A 213 REMARK 465 HIS A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 ALA A 219 REMARK 465 LEU A 220 REMARK 465 ASP A 221 REMARK 465 GLU A 222 REMARK 465 ASN A 223 REMARK 465 LEU A 224 REMARK 465 TYR A 225 REMARK 465 PHE A 226 REMARK 465 GLN A 227 REMARK 465 GLY A 228 REMARK 465 ALA A 229 REMARK 465 LEU A 230 REMARK 465 ALA A 231 REMARK 465 ASP A 232 REMARK 465 VAL A 233 REMARK 465 SER A 234 REMARK 465 ARG A 235 REMARK 465 PRO A 236 REMARK 465 PRO A 237 REMARK 465 HIS A 238 REMARK 465 ALA A 239 REMARK 465 ARG A 240 REMARK 465 LYS A 241 REMARK 465 THR A 242 REMARK 465 GLY A 243 REMARK 465 GLY A 244 REMARK 465 SER A 245 REMARK 465 SER A 246 REMARK 465 PRO A 247 REMARK 465 GLU A 248 REMARK 465 THR A 249 REMARK 465 LYS A 250 REMARK 465 TYR A 251 REMARK 465 ASP A 252 REMARK 465 LYS A 309 REMARK 465 ASN A 310 REMARK 465 VAL A 311 REMARK 465 GLN A 312 REMARK 465 TRP A 313 REMARK 465 ASP A 314 REMARK 465 GLU A 315 REMARK 465 ASP A 316 REMARK 465 SER A 317 REMARK 465 ALA A 728 REMARK 465 SER A 729 REMARK 465 PRO A 730 REMARK 465 PRO A 731 REMARK 465 SER A 732 REMARK 465 GLN B 210 REMARK 465 GLY B 220 REMARK 465 GLY B 221 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS A 262 CD CE NZ REMARK 470 LYS A 272 CG CD CE NZ REMARK 470 LYS A 274 CD CE NZ REMARK 470 GLN A 278 CD OE1 NE2 REMARK 470 GLU A 279 CD OE1 OE2 REMARK 470 GLU A 282 CD OE1 OE2 REMARK 470 ARG A 286 NE CZ NH1 NH2 REMARK 470 LYS A 296 CE NZ REMARK 470 GLU A 304 CD OE1 OE2 REMARK 470 LYS A 306 CG CD CE NZ REMARK 470 GLU A 319 CG CD OE1 OE2 REMARK 470 ARG A 441 CD NE CZ NH1 NH2 REMARK 470 ARG A 453 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 454 CG OD1 OD2 REMARK 470 ARG A 457 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 482 CD NE CZ NH1 NH2 REMARK 470 GLU A 485 CG CD OE1 OE2 REMARK 470 LYS A 558 CG CD CE NZ REMARK 470 LYS A 566 CG CD CE NZ REMARK 470 ILE A 568 CG1 CG2 CD1 REMARK 470 ARG A 694 NE CZ NH1 NH2 REMARK 470 LYS A 723 CD CE NZ REMARK 470 LYS A 726 CD CE NZ REMARK 470 ASP A 733 CG OD1 OD2 REMARK 470 PHE A 734 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 774 CG CD CE NZ REMARK 470 GLU A 853 CG CD OE1 OE2 REMARK 470 LYS A 857 CD CE NZ REMARK 470 LEU A 863 CG CD1 CD2 REMARK 470 ARG A 864 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 865 CG OD1 ND2 REMARK 470 GLU A 869 CG CD OE1 OE2 REMARK 470 GLN A 873 CG CD OE1 NE2 REMARK 470 VAL A 878 CG1 CG2 REMARK 470 ARG A 893 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 GLU B 212 CG CD OE1 OE2 REMARK 470 GLN B 219 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 307 -73.41 -86.88 REMARK 500 SER A 364 73.43 -112.85 REMARK 500 ARG A 453 -154.97 -158.17 REMARK 500 SER A 530 -13.44 -147.51 REMARK 500 ASN A 548 119.59 -172.28 REMARK 500 ASN A 556 68.86 -150.98 REMARK 500 ASN A 605 111.41 -164.88 REMARK 500 TRP A 829 -6.29 71.94 REMARK 500 VAL A 832 -60.04 -120.51 REMARK 500 ASN A 865 -24.51 -27.75 REMARK 500 LEU A 881 66.17 -119.35 REMARK 500 PRO B 218 -161.51 -118.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 1001 DBREF 6EJD A 232 959 UNP Q86Y38 XYLT1_HUMAN 232 959 DBREF 6EJD B 210 221 UNP P02760 AMBP_HUMAN 210 221 SEQADV 6EJD ALA A 209 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD PRO A 210 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD LEU A 211 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD VAL A 212 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 213 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 214 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 215 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 216 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 217 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD HIS A 218 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD ALA A 219 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD LEU A 220 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD ASP A 221 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD GLU A 222 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD ASN A 223 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD LEU A 224 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD TYR A 225 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD PHE A 226 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD GLN A 227 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD GLY A 228 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD ALA A 229 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD LEU A 230 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD ALA A 231 UNP Q86Y38 EXPRESSION TAG SEQADV 6EJD PRO B 218 UNP P02760 GLY 218 ENGINEERED MUTATION SEQADV 6EJD GLY B 220 UNP P02760 LEU 220 ENGINEERED MUTATION SEQADV 6EJD GLY B 221 UNP P02760 VAL 221 ENGINEERED MUTATION SEQRES 1 A 751 ALA PRO LEU VAL HIS HIS HIS HIS HIS HIS ALA LEU ASP SEQRES 2 A 751 GLU ASN LEU TYR PHE GLN GLY ALA LEU ALA ASP VAL SER SEQRES 3 A 751 ARG PRO PRO HIS ALA ARG LYS THR GLY GLY SER SER PRO SEQRES 4 A 751 GLU THR LYS TYR ASP GLN PRO PRO LYS CYS ASP ILE SER SEQRES 5 A 751 GLY LYS GLU ALA ILE SER ALA LEU SER ARG ALA LYS SER SEQRES 6 A 751 LYS HIS CYS ARG GLN GLU ILE GLY GLU THR TYR CYS ARG SEQRES 7 A 751 HIS LYS LEU GLY LEU LEU MET PRO GLU LYS VAL THR ARG SEQRES 8 A 751 PHE CYS PRO LEU GLU GLY LYS ALA ASN LYS ASN VAL GLN SEQRES 9 A 751 TRP ASP GLU ASP SER VAL GLU TYR MET PRO ALA ASN PRO SEQRES 10 A 751 VAL ARG ILE ALA PHE VAL LEU VAL VAL HIS GLY ARG ALA SEQRES 11 A 751 SER ARG GLN LEU GLN ARG MET PHE LYS ALA ILE TYR HIS SEQRES 12 A 751 LYS ASP HIS PHE TYR TYR ILE HIS VAL ASP LYS ARG SER SEQRES 13 A 751 ASN TYR LEU HIS ARG GLN VAL LEU GLN VAL SER ARG GLN SEQRES 14 A 751 TYR SER ASN VAL ARG VAL THR PRO TRP ARG MET ALA THR SEQRES 15 A 751 ILE TRP GLY GLY ALA SER LEU LEU SER THR TYR LEU GLN SEQRES 16 A 751 SER MET ARG ASP LEU LEU GLU MET THR ASP TRP PRO TRP SEQRES 17 A 751 ASP PHE PHE ILE ASN LEU SER ALA ALA ASP TYR PRO ILE SEQRES 18 A 751 ARG THR ASN ASP GLN LEU VAL ALA PHE LEU SER ARG TYR SEQRES 19 A 751 ARG ASP MET ASN PHE LEU LYS SER HIS GLY ARG ASP ASN SEQRES 20 A 751 ALA ARG PHE ILE ARG LYS GLN GLY LEU ASP ARG LEU PHE SEQRES 21 A 751 LEU GLU CYS ASP ALA HIS MET TRP ARG LEU GLY ASP ARG SEQRES 22 A 751 ARG ILE PRO GLU GLY ILE ALA VAL ASP GLY GLY SER ASP SEQRES 23 A 751 TRP PHE LEU LEU ASN ARG ARG PHE VAL GLU TYR VAL THR SEQRES 24 A 751 PHE SER THR ASP ASP LEU VAL THR LYS MET LYS GLN PHE SEQRES 25 A 751 TYR SER TYR THR LEU LEU PRO ALA GLU SER PHE PHE HIS SEQRES 26 A 751 THR VAL LEU GLU ASN SER PRO HIS CYS ASP THR MET VAL SEQRES 27 A 751 ASP ASN ASN LEU ARG ILE THR ASN TRP ASN ARG LYS LEU SEQRES 28 A 751 GLY CYS LYS CYS GLN TYR LYS HIS ILE VAL ASP TRP CYS SEQRES 29 A 751 GLY CYS SER PRO ASN ASP PHE LYS PRO GLN ASP PHE HIS SEQRES 30 A 751 ARG PHE GLN GLN THR ALA ARG PRO THR PHE PHE ALA ARG SEQRES 31 A 751 LYS PHE GLU ALA VAL VAL ASN GLN GLU ILE ILE GLY GLN SEQRES 32 A 751 LEU ASP TYR TYR LEU TYR GLY ASN TYR PRO ALA GLY THR SEQRES 33 A 751 PRO GLY LEU ARG SER TYR TRP GLU ASN VAL TYR ASP GLU SEQRES 34 A 751 PRO ASP GLY ILE HIS SER LEU SER ASP VAL THR LEU THR SEQRES 35 A 751 LEU TYR HIS SER PHE ALA ARG LEU GLY LEU ARG ARG ALA SEQRES 36 A 751 GLU THR SER LEU HIS THR ASP GLY GLU ASN SER CYS ARG SEQRES 37 A 751 TYR TYR PRO MET GLY HIS PRO ALA SER VAL HIS LEU TYR SEQRES 38 A 751 PHE LEU ALA ASP ARG PHE GLN GLY PHE LEU ILE LYS HIS SEQRES 39 A 751 HIS ALA THR ASN LEU ALA VAL SER LYS LEU GLU THR LEU SEQRES 40 A 751 GLU THR TRP VAL MET PRO LYS LYS VAL PHE LYS ILE ALA SEQRES 41 A 751 SER PRO PRO SER ASP PHE GLY ARG LEU GLN PHE SER GLU SEQRES 42 A 751 VAL GLY THR ASP TRP ASP ALA LYS GLU ARG LEU PHE ARG SEQRES 43 A 751 ASN PHE GLY GLY LEU LEU GLY PRO MET ASP GLU PRO VAL SEQRES 44 A 751 GLY MET GLN LYS TRP GLY LYS GLY PRO ASN VAL THR VAL SEQRES 45 A 751 THR VAL ILE TRP VAL ASP PRO VAL ASN VAL ILE ALA ALA SEQRES 46 A 751 THR TYR ASP ILE LEU ILE GLU SER THR ALA GLU PHE THR SEQRES 47 A 751 HIS TYR LYS PRO PRO LEU ASN LEU PRO LEU ARG PRO GLY SEQRES 48 A 751 VAL TRP THR VAL LYS ILE LEU HIS HIS TRP VAL PRO VAL SEQRES 49 A 751 ALA GLU THR LYS PHE LEU VAL ALA PRO LEU THR PHE SER SEQRES 50 A 751 ASN ARG GLN PRO ILE LYS PRO GLU GLU ALA LEU LYS LEU SEQRES 51 A 751 HIS ASN GLY PRO LEU ARG ASN ALA TYR MET GLU GLN SER SEQRES 52 A 751 PHE GLN SER LEU ASN PRO VAL LEU SER LEU PRO ILE ASN SEQRES 53 A 751 PRO ALA GLN VAL GLU GLN ALA ARG ARG ASN ALA ALA SER SEQRES 54 A 751 THR GLY THR ALA LEU GLU GLY TRP LEU ASP SER LEU VAL SEQRES 55 A 751 GLY GLY MET TRP THR ALA MET ASP ILE CYS ALA THR GLY SEQRES 56 A 751 PRO THR ALA CYS PRO VAL MET GLN THR CYS SER GLN THR SEQRES 57 A 751 ALA TRP SER SER PHE SER PRO ASP PRO LYS SER GLU LEU SEQRES 58 A 751 GLY ALA VAL LYS PRO ASP GLY ARG LEU ARG SEQRES 1 B 12 GLN GLU GLU GLU GLY SER GLY GLY PRO GLN GLY GLY HET PO4 A1001 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *6(H2 O) HELIX 1 AA1 GLY A 261 ALA A 271 1 11 HELIX 2 AA2 SER A 273 LEU A 289 1 17 HELIX 3 AA3 ALA A 338 TYR A 350 1 13 HELIX 4 AA4 SER A 364 ARG A 376 1 13 HELIX 5 AA5 ALA A 395 MET A 411 1 17 HELIX 6 AA6 THR A 431 TYR A 442 1 12 HELIX 7 AA7 ASP A 454 GLY A 463 1 10 HELIX 8 AA8 ARG A 500 SER A 509 1 10 HELIX 9 AA9 ASP A 511 TYR A 521 1 11 HELIX 10 AB1 SER A 522 THR A 524 5 3 HELIX 11 AB2 LEU A 526 GLU A 529 5 4 HELIX 12 AB3 SER A 530 SER A 539 1 10 HELIX 13 AB4 HIS A 541 ASP A 543 5 3 HELIX 14 AB5 ASN A 556 CYS A 561 1 6 HELIX 15 AB6 LYS A 580 GLN A 589 5 10 HELIX 16 AB7 GLN A 606 GLY A 618 1 13 HELIX 17 AB8 PRO A 638 LEU A 644 5 7 HELIX 18 AB9 SER A 645 LEU A 667 1 23 HELIX 19 AC1 LYS A 851 HIS A 859 1 9 HELIX 20 AC2 PHE A 872 ASN A 876 5 5 HELIX 21 AC3 ASN A 884 ALA A 896 1 13 HELIX 22 AC4 THR A 898 MET A 913 1 16 HELIX 23 AC5 THR A 932 THR A 936 5 5 HELIX 24 AC6 ASP A 944 GLU A 948 5 5 SHEET 1 AA1 5 VAL A 381 VAL A 383 0 SHEET 2 AA1 5 PHE A 355 VAL A 360 1 N TYR A 356 O ARG A 382 SHEET 3 AA1 5 ILE A 328 VAL A 334 1 N PHE A 330 O PHE A 355 SHEET 4 AA1 5 PHE A 418 LEU A 422 1 O ILE A 420 N VAL A 331 SHEET 5 AA1 5 LEU A 497 ASN A 499 -1 O LEU A 498 N PHE A 419 SHEET 1 AA2 3 ASP A 426 PRO A 428 0 SHEET 2 AA2 3 PHE A 596 ARG A 598 -1 O ALA A 597 N TYR A 427 SHEET 3 AA2 3 ARG A 551 THR A 553 1 N ILE A 552 O ARG A 598 SHEET 1 AA3 2 ASN A 446 LEU A 448 0 SHEET 2 AA3 2 MET A 545 ASP A 547 1 O VAL A 546 N ASN A 446 SHEET 1 AA4 2 ARG A 466 GLU A 470 0 SHEET 2 AA4 2 MET A 475 ASP A 480 -1 O GLY A 479 N LEU A 467 SHEET 1 AA5 5 SER A 629 ASP A 636 0 SHEET 2 AA5 5 TYR A 677 LEU A 691 -1 O LEU A 688 N GLU A 632 SHEET 3 AA5 5 ARG A 694 ASN A 706 -1 O GLN A 696 N TYR A 689 SHEET 4 AA5 5 LYS A 711 PRO A 721 -1 O LYS A 711 N ASN A 706 SHEET 5 AA5 5 TRP A 914 ALA A 921 -1 O THR A 915 N MET A 720 SHEET 1 AA6 3 LEU A 737 GLY A 743 0 SHEET 2 AA6 3 VAL A 767 TRP A 772 -1 O MET A 769 N GLU A 741 SHEET 3 AA6 3 PHE A 805 TYR A 808 -1 O THR A 806 N GLN A 770 SHEET 1 AA7 2 TRP A 746 ASP A 747 0 SHEET 2 AA7 2 LEU A 752 PHE A 753 -1 O LEU A 752 N ASP A 747 SHEET 1 AA8 4 ILE A 791 ILE A 799 0 SHEET 2 AA8 4 VAL A 778 VAL A 785 -1 N VAL A 778 O ILE A 799 SHEET 3 AA8 4 GLY A 819 HIS A 827 -1 O THR A 822 N VAL A 785 SHEET 4 AA8 4 VAL A 830 VAL A 839 -1 O VAL A 839 N GLY A 819 SHEET 1 AA9 2 PHE A 844 SER A 845 0 SHEET 2 AA9 2 GLN A 848 PRO A 849 -1 O GLN A 848 N SER A 845 SSBOND 1 CYS A 257 CYS A 285 1555 1555 2.04 SSBOND 2 CYS A 276 CYS A 471 1555 1555 2.05 SSBOND 3 CYS A 301 CYS A 542 1555 1555 2.04 SSBOND 4 CYS A 561 CYS A 574 1555 1555 2.03 SSBOND 5 CYS A 563 CYS A 572 1555 1555 2.04 SSBOND 6 CYS A 675 CYS A 927 1555 1555 2.04 SSBOND 7 CYS A 920 CYS A 933 1555 1555 2.03 CISPEP 1 ARG A 598 LYS A 599 0 -1.29 CISPEP 2 LEU A 814 PRO A 815 0 -3.78 SITE 1 AC1 2 ARG A 598 LYS A 599 CRYST1 67.538 87.346 153.629 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014807 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011449 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006509 0.00000