HEADER HYDROLASE 30-SEP-17 6ELY TITLE CRYSTAL STRUCTURE OF MISTLETOE LECTIN I (ML-I) FROM VISCUM ALBUM IN TITLE 2 COMPLEX WITH 4-N-FURFURYLCYTOSINE AT 2.84 A RESOLUTION CAVEAT 6ELY NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 NAG A 301 HAS WRONG CAVEAT 2 6ELY CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MISTLETOE LECTIN I; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: MISTLETOE LECTIN I; COMPND 6 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 3 ORGANISM_TAXID: 3972; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: VISCUM ALBUM; SOURCE 6 ORGANISM_TAXID: 3972 KEYWDS RIBOSOME-INACTIVATING PROTEIN, MISTLETOE LECTIN, VISCUM ALBUM L., 4- KEYWDS 2 N-FURFURYLCYTOSINE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.S.AHMAD,S.RASHEED,S.FALKE,B.KHALIQ,M.PERBANDT,M.I.CHOUDHARY, AUTHOR 2 W.T.MARKIEWICZ,J.BARCISZEWSKI,C.BETZEL REVDAT 6 17-JAN-24 6ELY 1 HETSYN REVDAT 5 29-JUL-20 6ELY 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 16-OCT-19 6ELY 1 REMARK REVDAT 3 28-NOV-18 6ELY 1 JRNL REVDAT 2 18-JUL-18 6ELY 1 JRNL REVDAT 1 02-MAY-18 6ELY 0 JRNL AUTH M.S.AHMAD,S.RASHEED,S.FALKE,B.KHALIQ,M.PERBANDT, JRNL AUTH 2 M.I.CHOUDHARY,W.T.MARKIEWICZ,J.BARCISZEWSKI,C.BETZEL JRNL TITL CRYSTAL STRUCTURE OF MISTLETOE LECTIN I (ML-I) FROM VISCUM JRNL TITL 2 ALBUM IN COMPLEX WITH 4-N-FURFURYLCYTOSINE AT 2.85 ANGSTROM JRNL TITL 3 RESOLUTION. JRNL REF MED CHEM V. 14 754 2018 JRNL REFN ISSN 1875-6638 JRNL PMID 29792147 JRNL DOI 10.2174/1573406414666180524095946 REMARK 2 REMARK 2 RESOLUTION. 2.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24367 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1272 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1689 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3925 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 254 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.00000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -3.25000 REMARK 3 B12 (A**2) : 0.50000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.371 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.701 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4237 ; 0.017 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3800 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5761 ; 2.109 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8814 ; 1.141 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 510 ; 8.362 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 182 ;36.462 ;24.286 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 627 ;15.804 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;19.942 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 680 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4617 ; 0.009 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 837 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2052 ; 3.619 ; 4.037 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2053 ; 3.618 ; 4.039 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2559 ; 5.746 ; 6.042 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2559 ; 5.747 ; 6.042 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2185 ; 4.477 ; 4.527 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2185 ; 4.476 ; 4.527 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3203 ; 6.816 ; 6.648 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4737 ; 9.827 ;49.342 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4738 ; 9.826 ;49.344 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6ELY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 2.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, DESY REMARK 200 BEAMLINE : P11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25725 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.840 REMARK 200 RESOLUTION RANGE LOW (A) : 47.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1SZ6 REMARK 200 REMARK 200 REMARK: HEXAGONAL BI-PYRAMIDAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION SOLUTION WAS COMPRISED REMARK 280 OF AMMONIUM SULPHATE (30 TO 36% W/V), 0.1 M GLYCINE (PH 2.5) AND REMARK 280 DIOXANE (4%) IN HANGING DROP VAPOR DIFFUSION SETUP. HEXAGONAL BI- REMARK 280 PYRAMIDAL CRYSTALS WERE GROWN WITHIN FOUR DAYS., TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 208.37933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.18967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 156.28450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 52.09483 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 260.47417 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 208.37933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 104.18967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 52.09483 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 156.28450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 260.47417 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -132.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 436 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O TYR A 115 OE1 GLU A 119 1.25 REMARK 500 O4 NAG C 2 O HOH B 401 2.01 REMARK 500 O3 NAG A 301 O HOH A 401 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CL CL A 303 CL CL A 303 11555 1.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 241 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 45 111.86 -12.41 REMARK 500 LEU A 75 18.44 57.64 REMARK 500 TYR A 115 -76.57 -39.14 REMARK 500 PRO A 145 173.22 -47.53 REMARK 500 ILE A 163 -73.94 -122.04 REMARK 500 SER A 223 -67.34 -26.21 REMARK 500 PRO A 224 55.74 -69.42 REMARK 500 ASN A 226 -159.08 -137.88 REMARK 500 ILE A 242 140.78 -172.95 REMARK 500 ASP B 2 67.75 -151.61 REMARK 500 CYS B 5 50.76 -156.18 REMARK 500 ASP B 55 8.96 -68.55 REMARK 500 PHE B 148 131.40 -38.84 REMARK 500 PRO B 241 0.15 -30.60 REMARK 500 ALA B 244 -48.40 84.69 REMARK 500 ARG B 245 138.67 -20.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 243 ALA B 244 139.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 479 DISTANCE = 6.24 ANGSTROMS REMARK 525 HOH B 480 DISTANCE = 8.33 ANGSTROMS DBREF 6ELY A 1 249 PDB 6ELY 6ELY 1 249 DBREF 6ELY B 1 263 PDB 6ELY 6ELY 1 263 SEQRES 1 A 249 TYR GLU ARG LEU SER LEU ARG THR VAL GLN GLN THR THR SEQRES 2 A 249 GLY ALA GLU TYR PHE SER PHE ILE THR LEU LEU ARG ASP SEQRES 3 A 249 PHE VAL SER SER GLY SER PHE SER ASN ASN ILE PRO LEU SEQRES 4 A 249 LEU ARG GLN SER THR ILE PRO VAL SER GLU GLY SER ARG SEQRES 5 A 249 PHE VAL LEU VAL GLU LEU THR ASN ALA GLY GLY ASP SER SEQRES 6 A 249 VAL THR ALA ALA ILE ASP VAL THR ASN LEU TYR VAL VAL SEQRES 7 A 249 ALA TYR GLN ALA GLY GLN GLN SER TYR PHE LEU LYS ASP SEQRES 8 A 249 ALA PRO ALA GLY ALA GLU THR GLN ASP PHE THR GLY THR SEQRES 9 A 249 THR ARG SER SER LEU PRO PHE ASN GLY SER TYR PRO ASP SEQRES 10 A 249 LEU GLU ARG TYR ALA GLY HIS ARG ASP GLN ILE PRO LEU SEQRES 11 A 249 GLY ILE ASP GLN LEU ILE GLN SER VAL THR ALA LEU ARG SEQRES 12 A 249 PHE PRO GLY GLY SER THR ARG THR GLN ALA ARG SER ILE SEQRES 13 A 249 LEU ILE LEU ILE GLN MET ILE SER GLU ALA ALA ARG PHE SEQRES 14 A 249 ASP PRO ILE LEU TRP ARG ALA ARG GLN TYR ILE ASN SER SEQRES 15 A 249 GLY ALA SER PHE LEU PRO ASP VAL TYR MET LEU GLU LEU SEQRES 16 A 249 GLU THR SER TRP GLY GLN GLN SER THR GLN VAL GLN HIS SEQRES 17 A 249 SER THR ASP GLY VAL PHE ASN ASN PRO ILE ARG LEU ALA SEQRES 18 A 249 LEU SER PRO GLY ASN VAL VAL THR LEU THR ASN VAL ARG SEQRES 19 A 249 ASP VAL ILE ALA SER LEU ALA ILE MET LEU PHE VAL CYS SEQRES 20 A 249 GLY GLU SEQRES 1 B 263 ASP ASP VAL THR CYS SER ALA SER GLU PRO THR VAL ARG SEQRES 2 B 263 ILE VAL GLY ARG ASN GLY MET THR VAL ASP VAL ARG ASP SEQRES 3 B 263 ASP ASP PHE GLN ASP GLY ASN GLN ILE GLN LEU TRP PRO SEQRES 4 B 263 SER LYS SER ASN ASN ASP PRO ASN GLN LEU TRP THR ILE SEQRES 5 B 263 LYS LYS ASP GLY THR ILE ARG SER ASN GLY SER CYS LEU SEQRES 6 B 263 THR THR TYR GLY TYR THR ALA GLY VAL TYR VAL MET ILE SEQRES 7 B 263 PHE ASP CYS ASN THR ALA VAL ARG GLU ALA THR ILE TRP SEQRES 8 B 263 GLN ILE TRP GLY ASN GLY THR ILE ILE ASN PRO ARG SER SEQRES 9 B 263 ASN LEU VAL LEU ALA ALA SER SER GLY ILE LYS GLY THR SEQRES 10 B 263 THR LEU THR VAL GLN THR LEU ASP TYR THR LEU GLY GLN SEQRES 11 B 263 GLY TRP LEU ALA GLY ASN ASP THR ALA PRO ARG GLU VAL SEQRES 12 B 263 THR ILE TYR GLY PHE ARG ASP LEU CYS MET GLU SER ALA SEQRES 13 B 263 GLY GLY SER VAL TRP VAL GLU THR CYS THR ALA GLY GLN SEQRES 14 B 263 GLU ASN GLN ARG TRP ALA LEU TYR GLY ASP GLY SER ILE SEQRES 15 B 263 ARG PRO LYS GLN ASN GLN SER GLN CYS LEU THR ASN GLY SEQRES 16 B 263 ARG ASP SER VAL SER THR VAL ILE ASN ILE VAL SER CYS SEQRES 17 B 263 SER ALA GLY SER SER GLY GLN ARG TRP VAL PHE THR ASN SEQRES 18 B 263 ALA GLY ALA ILE LEU ASN LEU LYS ASN GLY LEU ALA MET SEQRES 19 B 263 ASP VAL ALA GLN ALA ASN PRO ALA LEU ALA ARG ILE ILE SEQRES 20 B 263 ILE TYR PRO ALA THR GLY ASN PRO ASN GLN MET TRP LEU SEQRES 21 B 263 PRO VAL PRO HET NAG C 1 14 HET NAG C 2 14 HET NAG D 1 14 HET NAG D 2 14 HET GLA D 3 11 HET NAG A 301 14 HET CL A 302 1 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET SO4 A 307 5 HET SO4 A 308 5 HET SO4 A 309 5 HET SO4 A 310 5 HET SO4 A 311 5 HET GOL A 312 6 HET GOL A 313 6 HET GOL A 314 6 HET GOL A 315 6 HET GLY A 316 5 HET BFW A 317 14 HET NAG B 301 14 HET CL B 307 1 HET CL B 308 1 HET CL B 309 1 HET GOL B 310 6 HET GOL B 311 6 HET GOL B 312 6 HET GOL B 313 6 HET GOL B 314 6 HET GOL B 315 6 HET GOL B 316 6 HET GOL B 317 6 HET GOL B 318 6 HET GOL B 319 6 HET GOL B 320 6 HET GOL B 321 6 HET GOL B 322 6 HET GLY B 323 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GLA ALPHA-D-GALACTOPYRANOSE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM GLY GLYCINE HETNAM BFW 4-N-FURFURYLCYTOSINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GLA ALPHA-D-GALACTOSE; D-GALACTOSE; GALACTOSE; ALPHA D- HETSYN 2 GLA GALACTOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 4 GLA C6 H12 O6 FORMUL 6 CL 8(CL 1-) FORMUL 11 SO4 5(O4 S 2-) FORMUL 16 GOL 17(C3 H8 O3) FORMUL 20 GLY 2(C2 H5 N O2) FORMUL 21 BFW C9 H9 N3 O2 FORMUL 40 HOH *145(H2 O) HELIX 1 AA1 THR A 13 VAL A 28 1 16 HELIX 2 AA2 GLY A 95 ASP A 100 1 6 HELIX 3 AA3 SER A 114 GLY A 123 1 10 HELIX 4 AA4 HIS A 124 ILE A 128 5 5 HELIX 5 AA5 GLY A 131 PHE A 144 1 14 HELIX 6 AA6 SER A 148 ILE A 163 1 16 HELIX 7 AA7 ILE A 163 PHE A 169 1 7 HELIX 8 AA8 PHE A 169 GLY A 183 1 15 HELIX 9 AA9 ASP A 189 SER A 198 1 10 HELIX 10 AB1 SER A 198 SER A 209 1 12 HELIX 11 AB2 VAL A 233 ILE A 237 1 5 HELIX 12 AB3 GLY B 16 MET B 20 5 5 HELIX 13 AB4 ASP B 26 ASP B 28 5 3 HELIX 14 AB5 ASP B 45 LEU B 49 5 5 HELIX 15 AB6 VAL B 85 ILE B 90 5 6 HELIX 16 AB7 THR B 127 GLY B 131 5 5 HELIX 17 AB8 GLY B 147 LEU B 151 5 5 HELIX 18 AB9 GLN B 169 ASN B 171 5 3 HELIX 19 AC1 SER B 212 GLN B 215 5 4 HELIX 20 AC2 ASN B 254 MET B 258 5 5 SHEET 1 AA1 5 GLU A 2 ARG A 7 0 SHEET 2 AA1 5 PHE A 53 THR A 59 1 O LEU A 55 N LEU A 4 SHEET 3 AA1 5 SER A 65 ASP A 71 -1 O ALA A 68 N VAL A 56 SHEET 4 AA1 5 VAL A 77 ALA A 82 -1 O VAL A 78 N ALA A 69 SHEET 5 AA1 5 GLN A 85 PHE A 88 -1 O TYR A 87 N TYR A 80 SHEET 1 AA2 2 SER A 29 SER A 34 0 SHEET 2 AA2 2 ILE A 37 LEU A 40 -1 O LEU A 39 N SER A 30 SHEET 1 AA3 2 VAL A 213 LEU A 222 0 SHEET 2 AA3 2 ASN A 226 ASN A 232 -1 O VAL A 228 N LEU A 220 SHEET 1 AA4 5 THR B 11 VAL B 12 0 SHEET 2 AA4 5 TRP B 50 ILE B 52 -1 O TRP B 50 N VAL B 12 SHEET 3 AA4 5 ILE B 58 SER B 60 -1 O ARG B 59 N THR B 51 SHEET 4 AA4 5 SER B 63 THR B 67 -1 O SER B 63 N SER B 60 SHEET 5 AA4 5 VAL B 76 PHE B 79 -1 O MET B 77 N THR B 66 SHEET 1 AA5 2 ILE B 14 VAL B 15 0 SHEET 2 AA5 2 LEU B 133 ALA B 134 -1 O LEU B 133 N VAL B 15 SHEET 1 AA6 2 THR B 21 VAL B 24 0 SHEET 2 AA6 2 ILE B 35 TRP B 38 -1 O GLN B 36 N ASP B 23 SHEET 1 AA7 4 GLN B 92 ILE B 93 0 SHEET 2 AA7 4 ILE B 99 ASN B 101 -1 O ILE B 100 N GLN B 92 SHEET 3 AA7 4 LEU B 106 ALA B 109 -1 O LEU B 106 N ASN B 101 SHEET 4 AA7 4 THR B 120 GLN B 122 -1 O GLN B 122 N VAL B 107 SHEET 1 AA8 4 ILE B 182 PRO B 184 0 SHEET 2 AA8 4 ARG B 173 LEU B 176 -1 N ALA B 175 O ARG B 183 SHEET 3 AA8 4 ARG B 141 TYR B 146 -1 N ARG B 141 O LEU B 176 SHEET 4 AA8 4 LEU B 260 VAL B 262 -1 O VAL B 262 N THR B 144 SHEET 1 AA9 2 CYS B 152 ALA B 156 0 SHEET 2 AA9 2 SER B 159 GLU B 163 -1 O TRP B 161 N GLU B 154 SHEET 1 AB1 2 GLN B 190 THR B 193 0 SHEET 2 AB1 2 ASN B 204 SER B 207 -1 O ASN B 204 N THR B 193 SHEET 1 AB2 2 TRP B 217 PHE B 219 0 SHEET 2 AB2 2 ILE B 225 ASN B 227 -1 O LEU B 226 N VAL B 218 SHEET 1 AB3 2 ALA B 233 VAL B 236 0 SHEET 2 AB3 2 ILE B 246 TYR B 249 -1 O TYR B 249 N ALA B 233 SSBOND 1 CYS A 247 CYS B 5 1555 1555 2.08 SSBOND 2 CYS B 64 CYS B 81 1555 1555 2.09 SSBOND 3 CYS B 152 CYS B 165 1555 1555 2.10 SSBOND 4 CYS B 191 CYS B 208 1555 1555 2.07 LINK ND2 ASN A 112 C1 NAG A 301 1555 1555 1.43 LINK ND2 ASN B 61 C1 NAG B 301 1555 1555 1.45 LINK ND2 ASN B 96 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN B 136 C1 NAG D 1 1555 1555 1.42 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.43 LINK O4 NAG D 2 C1 GLA D 3 1555 1555 1.49 CISPEP 1 GLN B 238 ALA B 239 0 12.46 CRYST1 106.677 106.677 312.569 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009374 0.005412 0.000000 0.00000 SCALE2 0.000000 0.010824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003199 0.00000