HEADER TRANSFERASE 01-OCT-17 6EMA TITLE CRYSTAL STRUCTURE OF THE PROTEIN-KINASE A CATALYTIC SUBUNIT FROM TITLE 2 CRITECULUS GRISEUS IN COMPLEX WITH COMPOUNDS RKP120 AND ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE CATALYTIC SUBUNIT ALPHA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PKA C-ALPHA; COMPND 5 EC: 2.7.11.11; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE INHIBITOR; COMPND 9 CHAIN: C; COMPND 10 ENGINEERED: YES; COMPND 11 OTHER_DETAILS: PKI 5-22 WITH N20RBS MUTATION SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 ORGAN: OVARY; SOURCE 6 TISSUE: OVARY; SOURCE 7 GENE: PRKACA; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 13 ORGANISM_TAXID: 10029 KEYWDS COMPLEX, PEPTIDIC LIGAND, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.M.MUELLER,A.HEINE,G.KLEBE REVDAT 3 29-JUL-20 6EMA 1 COMPND REMARK HETNAM SITE REVDAT 2 15-MAY-19 6EMA 1 COMPND JRNL REVDAT 1 10-OCT-18 6EMA 0 JRNL AUTH J.M.MUELLER,R.KIRSCHNER,A.GEYER,G.KLEBE JRNL TITL CONCEPTIONAL DESIGN OF SELF-ASSEMBLING BISUBSTRATE-LIKE JRNL TITL 2 INHIBITORS OF PROTEIN KINASE A RESULTING IN A BORONIC ACID JRNL TITL 3 GLUTAMATE LINKAGE JRNL REF ACS OMEGA 2019 JRNL REFN ESSN 2470-1343 JRNL DOI 10.1021/ACSOMEGA.8B02364 REMARK 2 REMARK 2 RESOLUTION. 1.88 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10.1_2155: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.88 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32194 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4780 - 4.3008 0.99 2695 142 0.1686 0.1702 REMARK 3 2 4.3008 - 3.4144 0.99 2593 137 0.1679 0.1982 REMARK 3 3 3.4144 - 2.9829 1.00 2579 136 0.1954 0.2492 REMARK 3 4 2.9829 - 2.7103 0.99 2532 133 0.1948 0.2501 REMARK 3 5 2.7103 - 2.5161 0.99 2539 133 0.1858 0.1989 REMARK 3 6 2.5161 - 2.3678 1.00 2547 135 0.1790 0.2202 REMARK 3 7 2.3678 - 2.2492 1.00 2543 133 0.1713 0.2082 REMARK 3 8 2.2492 - 2.1513 0.99 2502 132 0.1801 0.2270 REMARK 3 9 2.1513 - 2.0685 0.99 2522 133 0.2019 0.2210 REMARK 3 10 2.0685 - 1.9971 0.99 2516 132 0.1986 0.2761 REMARK 3 11 1.9971 - 1.9347 1.00 2496 132 0.2153 0.2477 REMARK 3 12 1.9347 - 1.8794 0.99 2520 132 0.2336 0.2472 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2909 REMARK 3 ANGLE : 0.816 3961 REMARK 3 CHIRALITY : 0.052 431 REMARK 3 PLANARITY : 0.006 507 REMARK 3 DIHEDRAL : 13.900 1692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2356 30.6915 16.3695 REMARK 3 T TENSOR REMARK 3 T11: 0.2558 T22: 0.3298 REMARK 3 T33: 0.2495 T12: -0.0978 REMARK 3 T13: -0.0149 T23: 0.1135 REMARK 3 L TENSOR REMARK 3 L11: 0.2105 L22: 0.8697 REMARK 3 L33: 0.3860 L12: -0.2394 REMARK 3 L13: 0.0568 L23: 0.4065 REMARK 3 S TENSOR REMARK 3 S11: -0.0978 S12: -0.0179 S13: 0.2682 REMARK 3 S21: -0.3693 S22: -0.1294 S23: -0.1353 REMARK 3 S31: -0.2035 S32: 0.2638 S33: -0.0625 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3239 15.8934 -3.0712 REMARK 3 T TENSOR REMARK 3 T11: 0.5984 T22: 0.5149 REMARK 3 T33: 0.3473 T12: 0.0389 REMARK 3 T13: 0.0068 T23: -0.0208 REMARK 3 L TENSOR REMARK 3 L11: 0.5172 L22: 0.4401 REMARK 3 L33: 0.1162 L12: -0.4762 REMARK 3 L13: 0.2471 L23: -0.2220 REMARK 3 S TENSOR REMARK 3 S11: -0.1361 S12: 0.4298 S13: 0.0822 REMARK 3 S21: -0.7088 S22: 0.2316 S23: 0.1093 REMARK 3 S31: -0.2181 S32: -0.1322 S33: 0.0009 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8968 14.2352 -2.0026 REMARK 3 T TENSOR REMARK 3 T11: 0.2899 T22: 0.3361 REMARK 3 T33: 0.3106 T12: 0.0056 REMARK 3 T13: -0.1006 T23: -0.0601 REMARK 3 L TENSOR REMARK 3 L11: 0.6593 L22: 1.3923 REMARK 3 L33: 0.8304 L12: 0.6047 REMARK 3 L13: -0.5388 L23: -1.0582 REMARK 3 S TENSOR REMARK 3 S11: -0.2073 S12: 0.4532 S13: 0.0758 REMARK 3 S21: -0.6784 S22: -0.0499 S23: 0.0882 REMARK 3 S31: 0.0110 S32: -0.1813 S33: -0.6426 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1588 16.4649 12.9699 REMARK 3 T TENSOR REMARK 3 T11: 0.1839 T22: 0.1973 REMARK 3 T33: 0.1941 T12: 0.0183 REMARK 3 T13: -0.0142 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8201 L22: 1.0689 REMARK 3 L33: 0.8694 L12: 0.2342 REMARK 3 L13: -0.3574 L23: 0.1271 REMARK 3 S TENSOR REMARK 3 S11: -0.0282 S12: 0.1088 S13: -0.0902 REMARK 3 S21: -0.1692 S22: -0.0382 S23: 0.0602 REMARK 3 S31: 0.0054 S32: 0.1013 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 161 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5132 19.6567 22.6461 REMARK 3 T TENSOR REMARK 3 T11: 0.1795 T22: 0.1420 REMARK 3 T33: 0.2140 T12: 0.0324 REMARK 3 T13: 0.0127 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.2429 L22: 1.3223 REMARK 3 L33: 0.8101 L12: 0.1619 REMARK 3 L13: 0.4451 L23: -0.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.0595 S13: 0.0172 REMARK 3 S21: 0.0555 S22: -0.0200 S23: 0.2744 REMARK 3 S31: -0.0928 S32: -0.0467 S33: 0.0007 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 297 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7936 18.6218 36.6534 REMARK 3 T TENSOR REMARK 3 T11: 0.3193 T22: 0.2781 REMARK 3 T33: 0.1736 T12: -0.0233 REMARK 3 T13: 0.0262 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.5493 L22: 0.4394 REMARK 3 L33: 0.5857 L12: 0.2741 REMARK 3 L13: 0.1339 L23: -0.1174 REMARK 3 S TENSOR REMARK 3 S11: 0.0415 S12: -0.4175 S13: 0.0676 REMARK 3 S21: 0.5764 S22: -0.0037 S23: -0.0091 REMARK 3 S31: -0.2239 S32: 0.1060 S33: 0.0140 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 298 THROUGH 350 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.5558 12.5110 8.1507 REMARK 3 T TENSOR REMARK 3 T11: 0.1959 T22: 0.2263 REMARK 3 T33: 0.2742 T12: -0.0152 REMARK 3 T13: -0.0177 T23: -0.0242 REMARK 3 L TENSOR REMARK 3 L11: 0.4070 L22: 1.0262 REMARK 3 L33: 1.3905 L12: 0.2580 REMARK 3 L13: -0.6385 L23: 0.2056 REMARK 3 S TENSOR REMARK 3 S11: -0.0817 S12: 0.0795 S13: -0.1413 REMARK 3 S21: -0.1910 S22: 0.0003 S23: 0.1546 REMARK 3 S31: 0.0795 S32: 0.0322 S33: -0.0004 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32196 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.880 REMARK 200 RESOLUTION RANGE LOW (A) : 38.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.890 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 26.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.03 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49500 REMARK 200 FOR SHELL : 3.660 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES-BIS-TRIS, 55 MM LITHIUM REMARK 280 CHLORIDE, 10 MM MAGNESIUM CHLORIDE, 1 MM DTT, 0.1 MM SODIUM EDTA, REMARK 280 0.25 MM MEGA 8, 0.7 MM PEPTIDIC LIGAND, 2 MM ATP, 17% V/V REMARK 280 METHANOL/WATER IN RESERVOIR, PH 6.9, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.43000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.71650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.43000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.71650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 LYS A 7 REMARK 465 LYS A 8 REMARK 465 GLY A 9 REMARK 465 SEP A 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 11 CD OE1 OE2 REMARK 470 GLN A 12 CG CD OE1 NE2 REMARK 470 GLU A 13 CG CD OE1 OE2 REMARK 470 SER A 14 OG REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 LYS A 21 CD CE NZ REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 LYS A 28 CD CE NZ REMARK 470 LYS A 29 NZ REMARK 470 ARG A 45 CG CD NE CZ NH1 NH2 REMARK 470 SER A 53 OG REMARK 470 PHE A 54 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 56 CZ NH1 NH2 REMARK 470 LYS A 61 NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 LYS A 83 CG CD CE NZ REMARK 470 ILE A 135 CG1 CG2 CD1 REMARK 470 VAL A 191 CG1 CG2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LEU A 198 CG CD1 CD2 REMARK 470 LYS A 213 CE NZ REMARK 470 LYS A 217 NZ REMARK 470 ILE A 244 CG1 CG2 CD1 REMARK 470 GLU A 248 CG CD OE1 OE2 REMARK 470 LYS A 254 CE NZ REMARK 470 ARG A 256 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 279 CG CD CE NZ REMARK 470 LYS A 285 CE NZ REMARK 470 LYS A 295 CD CE NZ REMARK 470 LYS A 309 CE NZ REMARK 470 GLU A 311 CD OE1 OE2 REMARK 470 ILE A 315 CG1 CG2 CD1 REMARK 470 LYS A 317 CG CD CE NZ REMARK 470 PHE A 318 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 319 CG CD CE NZ REMARK 470 GLU A 331 CG CD OE1 OE2 REMARK 470 GLU A 333 CG CD OE1 OE2 REMARK 470 GLU A 334 CG CD OE1 OE2 REMARK 470 ILE A 335 CG1 CG2 CD1 REMARK 470 ARG A 336 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 339 CG1 CG2 CD1 REMARK 470 LYS A 342 CD CE NZ REMARK 470 LYS A 345 CG CD CE NZ REMARK 470 SER C 23 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 166 40.89 -146.47 REMARK 500 ASP A 184 95.19 76.03 REMARK 500 ALA A 240 170.60 178.97 REMARK 500 ARG C 18 49.00 -106.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 ATP A 401 DBREF 6EMA A 0 350 UNP P25321 KAPCA_CRIGR 1 351 DBREF 6EMA C 8 25 PDB 6EMA 6EMA 8 25 SEQADV 6EMA GLY A -2 UNP P25321 EXPRESSION TAG SEQADV 6EMA HIS A -1 UNP P25321 EXPRESSION TAG SEQRES 1 A 353 GLY HIS MET GLY ASN ALA ALA ALA ALA LYS LYS GLY SEP SEQRES 2 A 353 GLU GLN GLU SER VAL LYS GLU PHE LEU ALA LYS ALA LYS SEQRES 3 A 353 GLU GLU PHE LEU LYS LYS TRP GLU SER PRO SER GLN ASN SEQRES 4 A 353 THR ALA GLN LEU ASP HIS PHE ASP ARG ILE LYS THR LEU SEQRES 5 A 353 GLY THR GLY SER PHE GLY ARG VAL MET LEU VAL LYS HIS SEQRES 6 A 353 LYS GLU THR GLY ASN HIS TYR ALA MET LYS ILE LEU ASP SEQRES 7 A 353 LYS GLN LYS VAL VAL LYS LEU LYS GLN ILE GLU HIS THR SEQRES 8 A 353 LEU ASN GLU LYS ARG ILE LEU GLN ALA VAL ASN PHE PRO SEQRES 9 A 353 PHE LEU VAL LYS LEU GLU PHE SER PHE LYS ASP ASN SER SEQRES 10 A 353 ASN LEU TYR MET VAL MET GLU TYR VAL PRO GLY GLY GLU SEQRES 11 A 353 MET PHE SER HIS LEU ARG ARG ILE GLY ARG PHE SEP GLU SEQRES 12 A 353 PRO HIS ALA ARG PHE TYR ALA ALA GLN ILE VAL LEU THR SEQRES 13 A 353 PHE GLU TYR LEU HIS SER LEU ASP LEU ILE TYR ARG ASP SEQRES 14 A 353 LEU LYS PRO GLU ASN LEU LEU ILE ASP GLN GLN GLY TYR SEQRES 15 A 353 ILE GLN VAL THR ASP PHE GLY PHE ALA LYS ARG VAL LYS SEQRES 16 A 353 GLY ARG THR TRP TPO LEU CYS GLY THR PRO GLU TYR LEU SEQRES 17 A 353 ALA PRO GLU ILE ILE LEU SER LYS GLY TYR ASN LYS ALA SEQRES 18 A 353 VAL ASP TRP TRP ALA LEU GLY VAL LEU ILE TYR GLU MET SEQRES 19 A 353 ALA ALA GLY TYR PRO PRO PHE PHE ALA ASP GLN PRO ILE SEQRES 20 A 353 GLN ILE TYR GLU LYS ILE VAL SER GLY LYS VAL ARG PHE SEQRES 21 A 353 PRO SER HIS PHE SER SER ASP LEU LYS ASP LEU LEU ARG SEQRES 22 A 353 ASN LEU LEU GLN VAL ASP LEU THR LYS ARG PHE GLY ASN SEQRES 23 A 353 LEU LYS ASN GLY VAL ASN ASP ILE LYS ASN HIS LYS TRP SEQRES 24 A 353 PHE ALA THR THR ASP TRP ILE ALA ILE TYR GLN ARG LYS SEQRES 25 A 353 VAL GLU ALA PRO PHE ILE PRO LYS PHE LYS GLY PRO GLY SEQRES 26 A 353 ASP THR SER ASN PHE ASP ASP TYR GLU GLU GLU GLU ILE SEQRES 27 A 353 ARG VAL SEP ILE ASN GLU LYS CYS GLY LYS GLU PHE THR SEQRES 28 A 353 GLU PHE SEQRES 1 C 18 THR THR TYR ALA ASP PHE ILE ALA SER GLY ARG THR GLY SEQRES 2 C 18 ARG ARG SER ALA ILE MODRES 6EMA SEP A 139 SER MODIFIED RESIDUE MODRES 6EMA TPO A 197 THR MODIFIED RESIDUE MODRES 6EMA SEP A 338 SER MODIFIED RESIDUE HET SEP A 139 14 HET TPO A 197 17 HET SEP A 338 14 HET ATP A 401 19 HET RIP C 101 20 HETNAM SEP PHOSPHOSERINE HETNAM TPO PHOSPHOTHREONINE HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM RIP BETA-D-RIBOPYRANOSE HETSYN SEP PHOSPHONOSERINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 SEP 2(C3 H8 N O6 P) FORMUL 1 TPO C4 H10 N O6 P FORMUL 3 ATP C10 H16 N5 O13 P3 FORMUL 4 RIP C5 H10 O5 FORMUL 5 HOH *120(H2 O) HELIX 1 AA1 GLU A 11 SER A 32 1 22 HELIX 2 AA2 GLN A 39 ASP A 41 5 3 HELIX 3 AA3 LYS A 76 LEU A 82 1 7 HELIX 4 AA4 GLN A 84 VAL A 98 1 15 HELIX 5 AA5 GLU A 127 GLY A 136 1 10 HELIX 6 AA6 SEP A 139 LEU A 160 1 22 HELIX 7 AA7 LYS A 168 GLU A 170 5 3 HELIX 8 AA8 THR A 201 LEU A 205 5 5 HELIX 9 AA9 ALA A 206 LEU A 211 1 6 HELIX 10 AB1 LYS A 217 GLY A 234 1 18 HELIX 11 AB2 GLN A 242 GLY A 253 1 12 HELIX 12 AB3 SER A 262 LEU A 273 1 12 HELIX 13 AB4 VAL A 288 ASN A 293 1 6 HELIX 14 AB5 HIS A 294 ALA A 298 5 5 HELIX 15 AB6 ASP A 301 GLN A 307 1 7 HELIX 16 AB7 GLY A 344 THR A 348 5 5 HELIX 17 AB8 THR C 9 SER C 16 1 8 SHEET 1 AA1 5 PHE A 43 GLY A 52 0 SHEET 2 AA1 5 GLY A 55 HIS A 62 -1 O LEU A 59 N LYS A 47 SHEET 3 AA1 5 HIS A 68 ASP A 75 -1 O MET A 71 N MET A 58 SHEET 4 AA1 5 ASN A 115 GLU A 121 -1 O MET A 118 N LYS A 72 SHEET 5 AA1 5 LEU A 106 LYS A 111 -1 N GLU A 107 O VAL A 119 SHEET 1 AA2 2 LEU A 162 ILE A 163 0 SHEET 2 AA2 2 LYS A 189 ARG A 190 -1 O LYS A 189 N ILE A 163 SHEET 1 AA3 2 LEU A 172 ILE A 174 0 SHEET 2 AA3 2 ILE A 180 VAL A 182 -1 O GLN A 181 N LEU A 173 LINK C PHE A 138 N SEP A 139 1555 1555 1.33 LINK C SEP A 139 N GLU A 140 1555 1555 1.33 LINK C TRP A 196 N TPO A 197 1555 1555 1.33 LINK C TPO A 197 N LEU A 198 1555 1555 1.33 LINK C VAL A 337 N SEP A 338 1555 1555 1.33 LINK C SEP A 338 N ILE A 339 1555 1555 1.34 CRYST1 68.860 73.433 76.940 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014522 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013618 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012997 0.00000