HEADER RNA BINDING PROTEIN 03-OCT-17 6EMV TITLE CRYSTAL STRUCTURE OF DUAL SPECIFIC TRM10 CONSTRUCT FROM THERMOCOCCUS TITLE 2 KODAKARAENSIS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNA (GUANINE(9)-/ADENINE(9)-N1)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: TRNA(M1G9/M1A9)-METHYLTRANSFERASE,TRNA(M1G9/M1A9)MTASE; COMPND 5 EC: 2.1.1.218,2.1.1.221; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOCOCCUS KODAKARENSIS; SOURCE 3 ORGANISM_COMMON: PYROCOCCUS KODAKARAENSIS; SOURCE 4 ORGANISM_TAXID: 311400; SOURCE 5 GENE: TK0422; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS TRM10, DUAL SPECIFICITY ENZYMES, SPOUT, MTASES, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.K.SINGH,W.VERSEES REVDAT 3 01-MAY-24 6EMV 1 REMARK REVDAT 2 25-JUL-18 6EMV 1 JRNL REVDAT 1 13-JUN-18 6EMV 0 JRNL AUTH R.K.SINGH,A.FELLER,M.ROOVERS,D.VAN ELDER,L.WAUTERS, JRNL AUTH 2 L.DROOGMANS,W.VERSEES JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL-SPECIFICITY JRNL TITL 2 TRM10 ENZYME FROMTHERMOCOCCUS KODAKARAENSISPROMPTS JRNL TITL 3 RECONSIDERATION OF ITS CATALYTIC MECHANISM. JRNL REF RNA V. 24 1080 2018 JRNL REFN ESSN 1469-9001 JRNL PMID 29848639 JRNL DOI 10.1261/RNA.064345.117 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.39 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.366 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.998 REMARK 3 FREE R VALUE TEST SET COUNT : 609 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3976 - 4.6022 1.00 2910 153 0.1741 0.2204 REMARK 3 2 4.6022 - 3.6534 1.00 2894 152 0.1749 0.2338 REMARK 3 3 3.6534 - 3.1918 1.00 2858 150 0.2290 0.3000 REMARK 3 4 3.1918 - 2.9000 1.00 2913 154 0.2571 0.3171 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.373 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.286 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4152 REMARK 3 ANGLE : 0.478 5619 REMARK 3 CHIRALITY : 0.045 632 REMARK 3 PLANARITY : 0.002 705 REMARK 3 DIHEDRAL : 13.566 2466 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.4441 -26.0576 -17.2130 REMARK 3 T TENSOR REMARK 3 T11: 0.3495 T22: 0.3101 REMARK 3 T33: 0.3934 T12: -0.0718 REMARK 3 T13: -0.0416 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.9646 L22: 0.1386 REMARK 3 L33: 1.2812 L12: -0.2098 REMARK 3 L13: -0.1885 L23: 0.0162 REMARK 3 S TENSOR REMARK 3 S11: -0.0288 S12: 0.1279 S13: 0.1198 REMARK 3 S21: -0.0449 S22: 0.0515 S23: -0.0479 REMARK 3 S31: 0.0252 S32: -0.0682 S33: -0.0302 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6EMV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006851. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4-5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 2015-10-15 REMARK 200 DATA SCALING SOFTWARE : XDS 2015-10-15 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12193 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 44.392 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.19270 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 9.10 REMARK 200 R MERGE FOR SHELL (I) : 1.13500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER 2.5.5 REMARK 200 STARTING MODEL: PREVIOUSLY SOLVED STRUCTURE ( UNPUBLISHED) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG6000, 0.2M LICL AND 0.1M NAAC REMARK 280 PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.07767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.15533 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 96.11650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 160.19417 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.03883 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 ASP A 97 REMARK 465 THR A 135 REMARK 465 GLY A 136 REMARK 465 SER A 137 REMARK 465 GLY A 208 REMARK 465 GLY A 209 REMARK 465 MET B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 LEU B -7 REMARK 465 VAL B -6 REMARK 465 PRO B -5 REMARK 465 ARG B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 HIS B -1 REMARK 465 MET B 0 REMARK 465 ASP B 97 REMARK 465 THR B 135 REMARK 465 ASP B 206 REMARK 465 THR B 207 REMARK 465 GLY B 208 REMARK 465 GLY B 209 REMARK 465 ASN B 210 REMARK 465 LYS B 211 REMARK 465 MET C -20 REMARK 465 GLY C -19 REMARK 465 SER C -18 REMARK 465 SER C -17 REMARK 465 HIS C -16 REMARK 465 HIS C -15 REMARK 465 HIS C -14 REMARK 465 HIS C -13 REMARK 465 HIS C -12 REMARK 465 HIS C -11 REMARK 465 SER C -10 REMARK 465 SER C -9 REMARK 465 GLY C -8 REMARK 465 LEU C -7 REMARK 465 VAL C -6 REMARK 465 PRO C -5 REMARK 465 ARG C -4 REMARK 465 GLY C -3 REMARK 465 SER C -2 REMARK 465 HIS C -1 REMARK 465 MET C 0 REMARK 465 ASP C 97 REMARK 465 TRP C 98 REMARK 465 GLY C 136 REMARK 465 SER C 137 REMARK 465 GLY C 208 REMARK 465 GLY C 209 REMARK 465 ASN C 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 134 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 158 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 191 CG CD OE1 OE2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 LYS A 197 CD CE NZ REMARK 470 LYS A 212 CG CD CE NZ REMARK 470 LYS A 213 CE NZ REMARK 470 GLU A 221 CD OE1 OE2 REMARK 470 LYS A 228 CG CD CE NZ REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 TRP B 98 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 98 CZ3 CH2 REMARK 470 ARG B 131 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 186 CG CD OE1 OE2 REMARK 470 LYS B 212 CG CD CE NZ REMARK 470 GLU B 221 CD OE1 OE2 REMARK 470 LYS B 228 CG CD CE NZ REMARK 470 LYS C 114 CD CE NZ REMARK 470 LYS C 118 CG CD CE NZ REMARK 470 ARG C 131 CG CD NE CZ NH1 NH2 REMARK 470 THR C 135 CG2 REMARK 470 GLU C 150 CG CD OE1 OE2 REMARK 470 ASP C 157 CG OD1 OD2 REMARK 470 ARG C 158 NE CZ NH1 NH2 REMARK 470 GLU C 191 CG CD OE1 OE2 REMARK 470 LYS C 192 CG CD CE NZ REMARK 470 LYS C 197 CG CD CE NZ REMARK 470 LYS C 211 CG CD CE NZ REMARK 470 LYS C 212 CG CD CE NZ REMARK 470 SER C 224 OG REMARK 470 LYS C 228 CG CD CE NZ REMARK 470 ARG C 237 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 105 35.46 -77.18 REMARK 500 TYR A 133 -110.76 -137.64 REMARK 500 LYS A 212 177.02 63.27 REMARK 500 HIS B 107 10.85 83.86 REMARK 500 TYR B 133 -98.77 -125.27 REMARK 500 LYS B 213 86.78 -70.00 REMARK 500 LEU C 105 39.31 -92.80 REMARK 500 HIS C 107 33.50 -91.72 REMARK 500 ASP C 109 5.03 -69.86 REMARK 500 ASP C 132 5.05 -69.59 REMARK 500 TYR C 133 -38.40 -134.85 REMARK 500 PHE C 134 -114.37 -143.84 REMARK 500 LYS C 213 19.91 58.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH C 301 DBREF 6EMV A 97 272 UNP Q5JD38 TRM10_THEKO 97 272 DBREF 6EMV B 97 272 UNP Q5JD38 TRM10_THEKO 97 272 DBREF 6EMV C 97 272 UNP Q5JD38 TRM10_THEKO 97 272 SEQADV 6EMV MET A -20 UNP Q5JD38 INITIATING METHIONINE SEQADV 6EMV GLY A -19 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER A -18 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER A -17 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -16 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -15 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -14 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -13 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -12 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -11 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER A -10 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER A -9 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY A -8 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV LEU A -7 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV VAL A -6 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV PRO A -5 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ARG A -4 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY A -3 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER A -2 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS A -1 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV MET A 0 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ALA A 120 UNP Q5JD38 CYS 120 ENGINEERED MUTATION SEQADV 6EMV MET B -20 UNP Q5JD38 INITIATING METHIONINE SEQADV 6EMV GLY B -19 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER B -18 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER B -17 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -16 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -15 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -14 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -13 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -12 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -11 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER B -10 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER B -9 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY B -8 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV LEU B -7 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV VAL B -6 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV PRO B -5 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ARG B -4 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY B -3 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER B -2 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS B -1 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV MET B 0 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ALA B 120 UNP Q5JD38 CYS 120 ENGINEERED MUTATION SEQADV 6EMV MET C -20 UNP Q5JD38 INITIATING METHIONINE SEQADV 6EMV GLY C -19 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER C -18 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER C -17 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -16 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -15 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -14 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -13 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -12 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -11 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER C -10 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER C -9 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY C -8 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV LEU C -7 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV VAL C -6 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV PRO C -5 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ARG C -4 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV GLY C -3 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV SER C -2 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV HIS C -1 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV MET C 0 UNP Q5JD38 EXPRESSION TAG SEQADV 6EMV ALA C 120 UNP Q5JD38 CYS 120 ENGINEERED MUTATION SEQRES 1 A 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 197 LEU VAL PRO ARG GLY SER HIS MET ASP TRP PRO TYR PHE SEQRES 3 A 197 ILE ILE ASP LEU TYR HIS TRP ASP LYS HIS THR GLN LYS SEQRES 4 A 197 GLU LYS GLY LYS ILE ALA LEU GLN VAL ASN GLN SER TYR SEQRES 5 A 197 GLY LEU LEU ARG ASP TYR PHE THR GLY SER GLU LEU ALA SEQRES 6 A 197 VAL THR TRP ALA ASN GLU GLU PHE ARG GLU MET PHE HIS SEQRES 7 A 197 GLY PRO LEU ASP ARG ILE THR THR TYR GLY GLY PRO THR SEQRES 8 A 197 SER GLU PHE LEU LYS GLU ASN GLY ILE ASN GLU VAL VAL SEQRES 9 A 197 LEU LEU ASP PRO TRP ALA GLU GLU VAL LEU SER GLU LYS SEQRES 10 A 197 ASP PHE ASP VAL LYS ALA PHE ILE ILE GLY GLY ILE VAL SEQRES 11 A 197 ASP THR GLY GLY ASN LYS LYS LYS THR THR PRO LYS ILE SEQRES 12 A 197 GLY GLU GLU LEU GLU SER ALA GLY ILE LYS VAL ARG ARG SEQRES 13 A 197 ARG LYS ILE VAL LEU ARG GLY ASP VAL VAL GLY VAL PRO SEQRES 14 A 197 ASP ARG ILE ASN ARG ILE LEU GLY ILE ILE LEU LYS MET SEQRES 15 A 197 MET VAL GLU GLY LYS SER MET ASP GLU ALA VAL TYR GLU SEQRES 16 A 197 MET GLN SEQRES 1 B 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 197 LEU VAL PRO ARG GLY SER HIS MET ASP TRP PRO TYR PHE SEQRES 3 B 197 ILE ILE ASP LEU TYR HIS TRP ASP LYS HIS THR GLN LYS SEQRES 4 B 197 GLU LYS GLY LYS ILE ALA LEU GLN VAL ASN GLN SER TYR SEQRES 5 B 197 GLY LEU LEU ARG ASP TYR PHE THR GLY SER GLU LEU ALA SEQRES 6 B 197 VAL THR TRP ALA ASN GLU GLU PHE ARG GLU MET PHE HIS SEQRES 7 B 197 GLY PRO LEU ASP ARG ILE THR THR TYR GLY GLY PRO THR SEQRES 8 B 197 SER GLU PHE LEU LYS GLU ASN GLY ILE ASN GLU VAL VAL SEQRES 9 B 197 LEU LEU ASP PRO TRP ALA GLU GLU VAL LEU SER GLU LYS SEQRES 10 B 197 ASP PHE ASP VAL LYS ALA PHE ILE ILE GLY GLY ILE VAL SEQRES 11 B 197 ASP THR GLY GLY ASN LYS LYS LYS THR THR PRO LYS ILE SEQRES 12 B 197 GLY GLU GLU LEU GLU SER ALA GLY ILE LYS VAL ARG ARG SEQRES 13 B 197 ARG LYS ILE VAL LEU ARG GLY ASP VAL VAL GLY VAL PRO SEQRES 14 B 197 ASP ARG ILE ASN ARG ILE LEU GLY ILE ILE LEU LYS MET SEQRES 15 B 197 MET VAL GLU GLY LYS SER MET ASP GLU ALA VAL TYR GLU SEQRES 16 B 197 MET GLN SEQRES 1 C 197 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 C 197 LEU VAL PRO ARG GLY SER HIS MET ASP TRP PRO TYR PHE SEQRES 3 C 197 ILE ILE ASP LEU TYR HIS TRP ASP LYS HIS THR GLN LYS SEQRES 4 C 197 GLU LYS GLY LYS ILE ALA LEU GLN VAL ASN GLN SER TYR SEQRES 5 C 197 GLY LEU LEU ARG ASP TYR PHE THR GLY SER GLU LEU ALA SEQRES 6 C 197 VAL THR TRP ALA ASN GLU GLU PHE ARG GLU MET PHE HIS SEQRES 7 C 197 GLY PRO LEU ASP ARG ILE THR THR TYR GLY GLY PRO THR SEQRES 8 C 197 SER GLU PHE LEU LYS GLU ASN GLY ILE ASN GLU VAL VAL SEQRES 9 C 197 LEU LEU ASP PRO TRP ALA GLU GLU VAL LEU SER GLU LYS SEQRES 10 C 197 ASP PHE ASP VAL LYS ALA PHE ILE ILE GLY GLY ILE VAL SEQRES 11 C 197 ASP THR GLY GLY ASN LYS LYS LYS THR THR PRO LYS ILE SEQRES 12 C 197 GLY GLU GLU LEU GLU SER ALA GLY ILE LYS VAL ARG ARG SEQRES 13 C 197 ARG LYS ILE VAL LEU ARG GLY ASP VAL VAL GLY VAL PRO SEQRES 14 C 197 ASP ARG ILE ASN ARG ILE LEU GLY ILE ILE LEU LYS MET SEQRES 15 C 197 MET VAL GLU GLY LYS SER MET ASP GLU ALA VAL TYR GLU SEQRES 16 C 197 MET GLN HET SAH A 301 26 HET SAH B 301 26 HET SAH C 301 26 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 4 SAH 3(C14 H20 N6 O5 S) FORMUL 7 HOH *23(H2 O) HELIX 1 AA1 THR A 112 ASP A 132 1 21 HELIX 2 AA2 ASN A 145 PHE A 152 1 8 HELIX 3 AA3 PRO A 155 ILE A 159 5 5 HELIX 4 AA4 PRO A 165 GLU A 172 1 8 HELIX 5 AA5 SER A 190 PHE A 194 5 5 HELIX 6 AA6 THR A 214 ALA A 225 1 12 HELIX 7 AA7 ARG A 246 VAL A 259 1 14 HELIX 8 AA8 SER A 263 GLN A 272 1 10 HELIX 9 AA9 HIS B 107 HIS B 111 5 5 HELIX 10 AB1 THR B 112 ASP B 132 1 21 HELIX 11 AB2 ASN B 145 PHE B 152 1 8 HELIX 12 AB3 PRO B 165 ASN B 173 1 9 HELIX 13 AB4 SER B 190 PHE B 194 5 5 HELIX 14 AB5 THR B 215 ALA B 225 1 11 HELIX 15 AB6 ARG B 246 VAL B 259 1 14 HELIX 16 AB7 SER B 263 GLN B 272 1 10 HELIX 17 AB8 HIS C 107 HIS C 111 5 5 HELIX 18 AB9 THR C 112 ASP C 132 1 21 HELIX 19 AC1 ASN C 145 PHE C 152 1 8 HELIX 20 AC2 PRO C 165 GLU C 172 1 8 HELIX 21 AC3 SER C 190 PHE C 194 5 5 HELIX 22 AC4 THR C 214 ALA C 225 1 12 HELIX 23 AC5 ARG C 246 VAL C 259 1 14 HELIX 24 AC6 SER C 263 GLU C 270 1 8 SHEET 1 AA1 6 THR A 160 TYR A 162 0 SHEET 2 AA1 6 LEU A 139 THR A 142 1 N VAL A 141 O TYR A 162 SHEET 3 AA1 6 TYR A 100 ASP A 104 1 N ILE A 103 O ALA A 140 SHEET 4 AA1 6 ALA A 198 GLY A 202 1 O PHE A 199 N TYR A 100 SHEET 5 AA1 6 GLU A 177 LEU A 181 1 N VAL A 179 O ILE A 200 SHEET 6 AA1 6 LYS A 228 ARG A 232 1 O ARG A 232 N LEU A 180 SHEET 1 AA2 6 THR B 160 TYR B 162 0 SHEET 2 AA2 6 LEU B 139 THR B 142 1 N VAL B 141 O TYR B 162 SHEET 3 AA2 6 TYR B 100 ASP B 104 1 N ILE B 103 O ALA B 140 SHEET 4 AA2 6 ALA B 198 GLY B 202 1 O PHE B 199 N TYR B 100 SHEET 5 AA2 6 GLU B 177 LEU B 181 1 N LEU B 181 O ILE B 200 SHEET 6 AA2 6 LYS B 228 ARG B 232 1 O LYS B 228 N VAL B 178 SHEET 1 AA3 6 THR C 160 TYR C 162 0 SHEET 2 AA3 6 LEU C 139 THR C 142 1 N VAL C 141 O TYR C 162 SHEET 3 AA3 6 TYR C 100 ASP C 104 1 N PHE C 101 O ALA C 140 SHEET 4 AA3 6 ALA C 198 GLY C 202 1 O PHE C 199 N ILE C 102 SHEET 5 AA3 6 GLU C 177 LEU C 181 1 N VAL C 179 O ILE C 200 SHEET 6 AA3 6 LYS C 228 ARG C 232 1 O LYS C 228 N VAL C 178 SITE 1 AC1 13 LEU A 181 ASP A 182 PRO A 183 TRP A 184 SITE 2 AC1 13 GLY A 202 ILE A 204 ASP A 206 LYS A 211 SITE 3 AC1 13 THR A 214 THR A 215 ILE A 234 ASP A 245 SITE 4 AC1 13 ILE A 250 SITE 1 AC2 14 LEU B 181 ASP B 182 TRP B 184 ILE B 201 SITE 2 AC2 14 GLY B 202 ILE B 204 LYS B 212 THR B 214 SITE 3 AC2 14 THR B 215 ARG B 232 ILE B 234 VAL B 240 SITE 4 AC2 14 ASP B 245 ILE B 250 SITE 1 AC3 13 LEU C 181 ASP C 182 PRO C 183 TRP C 184 SITE 2 AC3 13 GLY C 202 ILE C 204 LYS C 213 THR C 214 SITE 3 AC3 13 THR C 215 LYS C 233 ILE C 234 ASP C 245 SITE 4 AC3 13 ILE C 250 CRYST1 71.082 71.082 192.233 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014068 0.008122 0.000000 0.00000 SCALE2 0.000000 0.016245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005202 0.00000