HEADER ISOMERASE 04-OCT-17 6ENH TITLE CRYSTAL STRUCTURE OF THE 43K ATPASE DOMAIN OF THERMUS THERMOPHILUS TITLE 2 GYRASE B IN COMPLEX WITH AN AMINOCOUMARIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT B; COMPND 3 CHAIN: A; COMPND 4 EC: 5.99.1.3; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: FRAGMENT: 43K ATPASE DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: GYRB, TTHA1586; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS TOPOISOMERASE, GYRASE B-AMINOCOUMARIN COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VANDEN BROECK,A.G.MCEWEN,V.LAMOUR REVDAT 3 17-JAN-24 6ENH 1 REMARK REVDAT 2 08-MAY-19 6ENH 1 JRNL REVDAT 1 10-APR-19 6ENH 0 JRNL AUTH A.VANDEN BROECK,A.G.MCEWEN,Y.CHEBARO,N.POTIER,V.LAMOUR JRNL TITL STRUCTURAL BASIS FOR DNA GYRASE INTERACTION WITH COUMERMYCIN JRNL TITL 2 A1. JRNL REF J.MED.CHEM. V. 62 4225 2019 JRNL REFN ISSN 0022-2623 JRNL PMID 30920824 JRNL DOI 10.1021/ACS.JMEDCHEM.8B01928 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.2 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 28205 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1410 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 14 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.14 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3018 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2563 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2868 REMARK 3 BIN R VALUE (WORKING SET) : 0.2534 REMARK 3 BIN FREE R VALUE : 0.3096 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.97 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 150 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 60.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.54100 REMARK 3 B22 (A**2) : -0.23460 REMARK 3 B33 (A**2) : -5.30640 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.90260 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.301 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.164 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.147 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.167 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.150 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2977 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4036 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1044 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 72 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 500 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2977 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 368 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3285 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.04 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.84 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.95 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|6 - A|28 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.6608 -3.4156 52.8281 REMARK 3 T TENSOR REMARK 3 T11: -0.2134 T22: -0.2573 REMARK 3 T33: 0.1067 T12: 0.0289 REMARK 3 T13: -0.1158 T23: -0.0616 REMARK 3 L TENSOR REMARK 3 L11: -0.7452 L22: 6.2539 REMARK 3 L33: 3.5357 L12: 1.8889 REMARK 3 L13: 0.3587 L23: 3.2898 REMARK 3 S TENSOR REMARK 3 S11: -0.1292 S12: -0.1418 S13: 0.4501 REMARK 3 S21: 0.2061 S22: -0.0341 S23: -0.0945 REMARK 3 S31: -0.0509 S32: 0.0075 S33: 0.1633 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { A|29 - A|73 } REMARK 3 ORIGIN FOR THE GROUP (A): -31.5649 -20.4956 39.3335 REMARK 3 T TENSOR REMARK 3 T11: -0.1861 T22: 0.0190 REMARK 3 T33: -0.0508 T12: 0.0562 REMARK 3 T13: -0.0175 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 3.4938 L22: 1.7763 REMARK 3 L33: 5.5401 L12: 1.0926 REMARK 3 L13: 0.7469 L23: -0.1913 REMARK 3 S TENSOR REMARK 3 S11: 0.0733 S12: 0.3224 S13: -0.3417 REMARK 3 S21: 0.0581 S22: 0.0437 S23: -0.3564 REMARK 3 S31: 0.4586 S32: 0.6989 S33: -0.1169 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { A|74 - A|124 } REMARK 3 ORIGIN FOR THE GROUP (A): -20.5498 -9.2036 45.2794 REMARK 3 T TENSOR REMARK 3 T11: -0.1755 T22: 0.0341 REMARK 3 T33: 0.1933 T12: -0.0548 REMARK 3 T13: -0.0862 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 5.9607 L22: 2.1494 REMARK 3 L33: 3.3225 L12: 3.2951 REMARK 3 L13: -1.1911 L23: -0.9897 REMARK 3 S TENSOR REMARK 3 S11: 0.0166 S12: 0.3224 S13: 0.4852 REMARK 3 S21: 0.2692 S22: -0.0626 S23: -0.4808 REMARK 3 S31: -0.3966 S32: 0.6989 S33: 0.0460 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { A|125 - A|176 } REMARK 3 ORIGIN FOR THE GROUP (A): -21.6846 -20.5941 48.1200 REMARK 3 T TENSOR REMARK 3 T11: -0.1544 T22: -0.0504 REMARK 3 T33: 0.0266 T12: 0.0812 REMARK 3 T13: -0.0921 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: 7.6813 L22: 1.7042 REMARK 3 L33: 4.4436 L12: -0.3572 REMARK 3 L13: 1.5738 L23: 0.1938 REMARK 3 S TENSOR REMARK 3 S11: 0.1691 S12: 0.3224 S13: -0.4638 REMARK 3 S21: 0.3582 S22: -0.0945 S23: -0.4480 REMARK 3 S31: 0.4747 S32: 0.6989 S33: -0.0746 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: { A|177 - A|217 } REMARK 3 ORIGIN FOR THE GROUP (A): -38.9157 -26.5367 36.7393 REMARK 3 T TENSOR REMARK 3 T11: -0.0582 T22: 0.0544 REMARK 3 T33: -0.0595 T12: 0.0328 REMARK 3 T13: -0.0683 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 2.7756 L22: 3.0999 REMARK 3 L33: 3.4131 L12: 0.8620 REMARK 3 L13: 0.5117 L23: 0.0621 REMARK 3 S TENSOR REMARK 3 S11: 0.0914 S12: 0.5454 S13: -0.4162 REMARK 3 S21: 0.0818 S22: 0.1207 S23: 0.1203 REMARK 3 S31: 0.6629 S32: 0.0941 S33: -0.2122 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: { A|218 - A|258 } REMARK 3 ORIGIN FOR THE GROUP (A): -44.4631 -20.3545 16.0970 REMARK 3 T TENSOR REMARK 3 T11: -0.1035 T22: 0.2911 REMARK 3 T33: -0.2558 T12: -0.1031 REMARK 3 T13: 0.0950 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 7.0526 L22: 7.6350 REMARK 3 L33: 1.7603 L12: 0.9697 REMARK 3 L13: 2.9209 L23: 1.3035 REMARK 3 S TENSOR REMARK 3 S11: -0.0104 S12: 0.2278 S13: 0.1329 REMARK 3 S21: 0.1425 S22: 0.1942 S23: -0.3706 REMARK 3 S31: -0.0825 S32: 0.6640 S33: -0.1838 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: { A|259 - A|274 } REMARK 3 ORIGIN FOR THE GROUP (A): -48.4772 -13.4276 23.7171 REMARK 3 T TENSOR REMARK 3 T11: -0.1624 T22: 0.3040 REMARK 3 T33: -0.2484 T12: -0.1045 REMARK 3 T13: 0.1015 T23: -0.1559 REMARK 3 L TENSOR REMARK 3 L11: -1.1977 L22: 3.2109 REMARK 3 L33: 4.2566 L12: -0.3695 REMARK 3 L13: 1.4987 L23: 0.2335 REMARK 3 S TENSOR REMARK 3 S11: 0.0699 S12: -0.5030 S13: 0.1793 REMARK 3 S21: 0.4713 S22: 0.2634 S23: 0.2950 REMARK 3 S31: -0.4035 S32: 0.3693 S33: -0.3333 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: { A|275 - A|303 } REMARK 3 ORIGIN FOR THE GROUP (A): -49.3483 -9.8939 5.7802 REMARK 3 T TENSOR REMARK 3 T11: 0.0961 T22: -0.0882 REMARK 3 T33: -0.2305 T12: -0.1875 REMARK 3 T13: 0.1734 T23: 0.0692 REMARK 3 L TENSOR REMARK 3 L11: 9.5001 L22: 0.3371 REMARK 3 L33: 5.1116 L12: -1.6225 REMARK 3 L13: -1.0158 L23: -3.5625 REMARK 3 S TENSOR REMARK 3 S11: 0.2313 S12: 0.5333 S13: 0.6653 REMARK 3 S21: -0.4251 S22: -0.1999 S23: -0.3623 REMARK 3 S31: -0.3664 S32: 0.1268 S33: -0.0314 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: { A|304 - A|329 } REMARK 3 ORIGIN FOR THE GROUP (A): -49.8063 -10.0723 13.7355 REMARK 3 T TENSOR REMARK 3 T11: -0.0718 T22: -0.0049 REMARK 3 T33: -0.2178 T12: -0.1389 REMARK 3 T13: 0.0497 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 4.1425 L22: 2.5959 REMARK 3 L33: 3.1544 L12: -2.3468 REMARK 3 L13: -2.7052 L23: -1.6731 REMARK 3 S TENSOR REMARK 3 S11: 0.1361 S12: -0.3225 S13: 0.2614 REMARK 3 S21: -0.1657 S22: -0.0485 S23: 0.1440 REMARK 3 S31: -0.3754 S32: 0.3477 S33: -0.0877 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: { A|330 - A|362 } REMARK 3 ORIGIN FOR THE GROUP (A): -41.3483 -8.2898 12.8685 REMARK 3 T TENSOR REMARK 3 T11: -0.1529 T22: 0.3040 REMARK 3 T33: -0.0675 T12: -0.1952 REMARK 3 T13: 0.1579 T23: 0.0900 REMARK 3 L TENSOR REMARK 3 L11: 4.1845 L22: 4.4318 REMARK 3 L33: 2.7158 L12: 2.7266 REMARK 3 L13: 4.4530 L23: -0.0550 REMARK 3 S TENSOR REMARK 3 S11: 0.0068 S12: 0.3011 S13: 0.4914 REMARK 3 S21: -0.2027 S22: -0.3472 S23: -0.5921 REMARK 3 S31: -0.0284 S32: 0.6271 S33: 0.3403 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: { A|363 - A|390 } REMARK 3 ORIGIN FOR THE GROUP (A): -64.4488 -15.9740 2.8479 REMARK 3 T TENSOR REMARK 3 T11: 0.1291 T22: 0.0182 REMARK 3 T33: -0.2262 T12: 0.1511 REMARK 3 T13: -0.0482 T23: -0.0569 REMARK 3 L TENSOR REMARK 3 L11: 4.5980 L22: 3.0266 REMARK 3 L33: 0.7038 L12: -0.0935 REMARK 3 L13: 1.7993 L23: 1.5750 REMARK 3 S TENSOR REMARK 3 S11: -0.1705 S12: 0.2270 S13: 0.1729 REMARK 3 S21: -0.6135 S22: -0.1405 S23: 0.3111 REMARK 3 S31: -0.0846 S32: 0.4024 S33: 0.3109 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: { A|401 - A|401 } REMARK 3 ORIGIN FOR THE GROUP (A): -11.6137 -13.9962 31.3008 REMARK 3 T TENSOR REMARK 3 T11: -0.3743 T22: 0.3040 REMARK 3 T33: 0.0029 T12: 0.0232 REMARK 3 T13: 0.0388 T23: -0.0848 REMARK 3 L TENSOR REMARK 3 L11: -0.1955 L22: 0.0000 REMARK 3 L33: 2.3523 L12: 1.5334 REMARK 3 L13: 2.7391 L23: 2.6565 REMARK 3 S TENSOR REMARK 3 S11: 0.0566 S12: 0.0061 S13: -0.0358 REMARK 3 S21: 0.0040 S22: 0.1202 S23: -0.0164 REMARK 3 S31: 0.0155 S32: 0.0146 S33: -0.1767 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ENH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976252 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28248 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 23.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 2.730 REMARK 200 R MERGE (I) : 0.02000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.69 REMARK 200 R MERGE FOR SHELL (I) : 0.81700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1KIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 47% MPD, 0.1M IMIDAZOLE PH 7.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 83.18500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 18.92500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 83.18500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 18.92500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -23.09238 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.62830 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TYR A 3 REMARK 465 ASP A 4 REMARK 465 ALA A 5 REMARK 465 GLY A 98 REMARK 465 GLY A 99 REMARK 465 LYS A 100 REMARK 465 PHE A 101 REMARK 465 GLU A 102 REMARK 465 GLN A 103 REMARK 465 GLY A 104 REMARK 465 ALA A 105 REMARK 465 TYR A 106 REMARK 465 LYS A 107 REMARK 465 VAL A 108 REMARK 465 SER A 109 REMARK 465 GLY A 110 REMARK 465 GLY A 111 REMARK 465 LEU A 112 REMARK 465 HIS A 113 REMARK 465 GLN A 333 REMARK 465 THR A 334 REMARK 465 LYS A 335 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 96 CG ND1 CD2 CE1 NE2 REMARK 470 SER A 97 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 273 79.98 -104.67 REMARK 500 THR A 309 -142.70 -94.13 REMARK 500 ASN A 340 105.11 -45.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BHW A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IMD A 403 DBREF 6ENH A 1 390 UNP Q5SHZ4 GYRB_THET8 1 390 SEQADV 6ENH GLY A -2 UNP Q5SHZ4 EXPRESSION TAG SEQADV 6ENH PRO A -1 UNP Q5SHZ4 EXPRESSION TAG SEQADV 6ENH HIS A 0 UNP Q5SHZ4 EXPRESSION TAG SEQRES 1 A 393 GLY PRO HIS MET SER TYR ASP ALA SER ALA ILE ARG VAL SEQRES 2 A 393 LEU LYS GLY LEU GLU GLY VAL ARG HIS ARG PRO ALA MET SEQRES 3 A 393 TYR ILE GLY GLY THR GLY VAL GLU GLY TYR HIS HIS LEU SEQRES 4 A 393 PHE LYS GLU ILE LEU ASP ASN ALA VAL ASP GLU ALA LEU SEQRES 5 A 393 ALA GLY TYR ALA THR GLU ILE LEU VAL ARG LEU ASN GLU SEQRES 6 A 393 ASP GLY SER LEU THR VAL GLU ASP ASN GLY ARG GLY ILE SEQRES 7 A 393 PRO VAL ASP LEU MET PRO GLU GLU GLY LYS PRO ALA VAL SEQRES 8 A 393 GLU VAL ILE TYR THR THR LEU HIS SER GLY GLY LYS PHE SEQRES 9 A 393 GLU GLN GLY ALA TYR LYS VAL SER GLY GLY LEU HIS GLY SEQRES 10 A 393 VAL GLY ALA SER VAL VAL ASN ALA LEU SER GLU TRP THR SEQRES 11 A 393 VAL VAL GLU VAL PHE ARG GLU GLY LYS HIS HIS ARG ILE SEQRES 12 A 393 ALA PHE SER ARG GLY GLU VAL THR GLU PRO LEU ARG VAL SEQRES 13 A 393 VAL GLY GLU ALA PRO ARG GLY LYS THR GLY THR ARG VAL SEQRES 14 A 393 THR PHE LYS PRO ASP PRO GLU ILE PHE GLY ASN LEU ARG SEQRES 15 A 393 PHE ASP PRO SER LYS ILE ARG ALA ARG LEU ARG GLU VAL SEQRES 16 A 393 ALA TYR LEU VAL ALA GLY LEU LYS LEU VAL PHE GLN ASP SEQRES 17 A 393 ARG GLN HIS GLY LYS GLU GLU VAL PHE LEU ASP LYS GLY SEQRES 18 A 393 GLY VAL ALA SER PHE ALA LYS ALA LEU ALA GLU GLY GLU SEQRES 19 A 393 ASP LEU LEU TYR GLU LYS PRO PHE LEU ILE ARG GLY THR SEQRES 20 A 393 HIS GLY GLU VAL GLU VAL GLU VAL GLY PHE LEU HIS THR SEQRES 21 A 393 GLN GLY TYR ASN ALA GLU ILE LEU THR TYR ALA ASN MET SEQRES 22 A 393 ILE PRO THR ARG ASP GLY GLY THR HIS LEU THR ALA PHE SEQRES 23 A 393 LYS SER ALA TYR SER ARG ALA LEU ASN GLN TYR ALA LYS SEQRES 24 A 393 LYS ALA GLY LEU ASN LYS GLU LYS GLY PRO GLN PRO THR SEQRES 25 A 393 GLY ASP ASP LEU LEU GLU GLY LEU TYR ALA VAL VAL SER SEQRES 26 A 393 VAL LYS LEU PRO ASN PRO GLN PHE GLU GLY GLN THR LYS SEQRES 27 A 393 GLY LYS LEU LEU ASN PRO GLU ALA GLY THR ALA VAL GLY SEQRES 28 A 393 GLN VAL VAL TYR GLU ARG LEU LEU GLU ILE LEU GLU GLU SEQRES 29 A 393 ASN PRO ARG ILE ALA LYS ALA VAL TYR GLU LYS ALA LEU SEQRES 30 A 393 ARG ALA ALA GLN ALA ARG GLU ALA ALA ARG LYS ALA ARG SEQRES 31 A 393 GLU LEU VAL HET BHW A 401 80 HET IMD A 402 5 HET IMD A 403 5 HETNAM BHW COUMERMYCIN A1 HETNAM IMD IMIDAZOLE FORMUL 2 BHW C55 H59 N5 O20 FORMUL 3 IMD 2(C3 H5 N2 1+) FORMUL 5 HOH *90(H2 O) HELIX 1 AA1 ALA A 7 LYS A 12 1 6 HELIX 2 AA2 GLY A 13 ARG A 20 1 8 HELIX 3 AA3 PRO A 21 GLY A 26 1 6 HELIX 4 AA4 GLY A 29 ALA A 50 1 22 HELIX 5 AA5 ALA A 87 THR A 94 1 8 HELIX 6 AA6 VAL A 115 LEU A 123 1 9 HELIX 7 AA7 ASP A 171 GLY A 176 1 6 HELIX 8 AA8 ASP A 181 VAL A 196 1 16 HELIX 9 AA9 GLY A 218 ALA A 228 1 11 HELIX 10 AB1 GLY A 277 ALA A 298 1 22 HELIX 11 AB2 GLY A 310 GLU A 315 5 6 HELIX 12 AB3 ASN A 340 ASN A 362 1 23 HELIX 13 AB4 ASN A 362 VAL A 390 1 29 SHEET 1 AA1 8 GLU A 146 GLU A 156 0 SHEET 2 AA1 8 LYS A 136 SER A 143 -1 N HIS A 137 O VAL A 154 SHEET 3 AA1 8 SER A 124 ARG A 133 -1 N VAL A 131 O HIS A 138 SHEET 4 AA1 8 GLY A 163 PRO A 170 -1 O THR A 167 N VAL A 128 SHEET 5 AA1 8 LEU A 66 ASP A 70 -1 N VAL A 68 O VAL A 166 SHEET 6 AA1 8 GLU A 55 LEU A 60 -1 N LEU A 57 O GLU A 69 SHEET 7 AA1 8 LYS A 200 ASP A 205 1 O VAL A 202 N ILE A 56 SHEET 8 AA1 8 GLU A 211 PHE A 214 -1 O GLU A 212 N PHE A 203 SHEET 1 AA2 2 LEU A 79 MET A 80 0 SHEET 2 AA2 2 LYS A 85 PRO A 86 -1 O LYS A 85 N MET A 80 SHEET 1 AA3 5 PHE A 239 HIS A 245 0 SHEET 2 AA3 5 VAL A 248 HIS A 256 -1 O VAL A 252 N ILE A 241 SHEET 3 AA3 5 LEU A 317 LYS A 324 -1 O SER A 322 N GLU A 251 SHEET 4 AA3 5 GLU A 263 ALA A 268 1 N GLU A 263 O LEU A 317 SHEET 5 AA3 5 ILE A 271 PRO A 272 -1 O ILE A 271 N ALA A 268 SHEET 1 AA4 2 PHE A 330 GLU A 331 0 SHEET 2 AA4 2 LYS A 337 LEU A 338 -1 O LYS A 337 N GLU A 331 SITE 1 AC1 15 ILE A 40 ASN A 43 ALA A 44 ASP A 46 SITE 2 AC1 15 GLU A 47 VAL A 68 ASP A 70 ARG A 73 SITE 3 AC1 15 GLY A 74 ILE A 75 PRO A 76 ILE A 91 SITE 4 AC1 15 ARG A 133 THR A 164 VAL A 166 SITE 1 AC2 1 ALA A 48 SITE 1 AC3 1 GLU A 55 CRYST1 166.370 37.850 66.750 90.00 110.24 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006011 0.000000 0.002216 0.00000 SCALE2 0.000000 0.026420 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015967 0.00000