HEADER OXIDOREDUCTASE 09-OCT-17 6EOI TITLE REDUCTIVE AMINASE FROM ASPERGILLUS TERREUS IN COMPLEX WITH NADPH AND TITLE 2 ETHYL-5-OXOHEXANOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDUCTIVE AMINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS TERREUS; SOURCE 3 ORGANISM_TAXID: 33178; SOURCE 4 GENE: ATEG_08501; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-YSBLIC-3C KEYWDS AMINE, IMINE, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,J.MANGAS-SANCHEZ,N.J.TURNER,G.GROGAN REVDAT 3 17-JAN-24 6EOI 1 REMARK REVDAT 2 13-NOV-19 6EOI 1 JRNL REVDAT 1 31-OCT-18 6EOI 0 JRNL AUTH M.SHARMA,J.MANGAS-SANCHEZ,N.J.TURNER,G.GROGAN JRNL TITL A MECHANISM FOR REDUCTIVE AMINATION CATALYZED BY FUNGAL JRNL TITL 2 REDUCTIVE AMINASES JRNL REF ACS CATALYSIS 2018 JRNL REFN ESSN 2155-5435 JRNL DOI 10.1021/ACSCATAL.8B03491 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0158 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 82.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 52719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2716 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3920 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4082 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.78000 REMARK 3 B22 (A**2) : -4.76000 REMARK 3 B33 (A**2) : 5.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.58000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.116 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.061 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4289 ; 0.018 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4010 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5854 ; 1.789 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9225 ; 1.115 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 571 ; 5.842 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;37.784 ;23.358 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 620 ;12.934 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;19.355 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 700 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4804 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 851 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2287 ; 2.912 ; 3.322 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2286 ; 2.912 ; 3.321 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2851 ; 3.763 ; 4.955 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2852 ; 3.763 ; 4.956 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2002 ; 3.417 ; 3.554 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2003 ; 3.416 ; 3.554 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3002 ; 4.791 ; 5.219 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4409 ; 5.572 ;38.956 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4410 ; 5.571 ;38.958 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 6 294 B 6 294 15998 0.06 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6EOI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 10-OCT-17. REMARK 100 THE DEPOSITION ID IS D_1200006973. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-JUN-16 REMARK 200 TEMPERATURE (KELVIN) : 120 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9282 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55478 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 82.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.57000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 5G6S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM TRIS-HCL PH 7.5; 0.2 M MGCL2; REMARK 280 25% PEG 3350; 2 MM NADPH; 5 MM ESTER SUBSTRATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 82.52000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLY A 143 REMARK 465 SER A 144 REMARK 465 GLY A 202 REMARK 465 VAL A 203 REMARK 465 ASN A 295 REMARK 465 ALA A 296 REMARK 465 SER A 297 REMARK 465 VAL A 298 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 THR B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLU B 201 REMARK 465 GLY B 202 REMARK 465 ASN B 295 REMARK 465 ALA B 296 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 162 CD CE NZ REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 228 NE CZ NH1 NH2 REMARK 470 ARG A 257 CZ NH1 NH2 REMARK 470 GLU A 258 CG CD OE1 OE2 REMARK 470 ARG A 294 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 9 CE NZ REMARK 470 LYS B 28 CD CE NZ REMARK 470 LYS B 42 CD CE NZ REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 TYR B 148 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 SER B 150 OG REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 GLU B 199 CD OE1 OE2 REMARK 470 GLU B 207 CD OE1 OE2 REMARK 470 GLN B 217 OE1 NE2 REMARK 470 GLU B 264 CG CD OE1 OE2 REMARK 470 ARG B 294 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 197 O HOH B 401 1.92 REMARK 500 OD1 ASN B 44 O HOH B 402 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 167 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG B 257 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 125 148.19 -174.11 REMARK 500 THR A 239 -48.07 -130.61 REMARK 500 SER A 240 86.68 -157.58 REMARK 500 ALA B 125 146.50 -177.99 REMARK 500 GLU B 199 41.42 -100.77 REMARK 500 SER B 240 85.80 -150.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 100 O REMARK 620 2 SER B 172 OG 97.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BKN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BKN B 303 DBREF 6EOI A 1 298 UNP Q0CCT3 Q0CCT3_ASPTN 1 298 DBREF 6EOI B 1 298 UNP Q0CCT3 Q0CCT3_ASPTN 1 298 SEQRES 1 A 298 MET ALA THR THR THR THR THR THR LYS LEU THR ILE PHE SEQRES 2 A 298 GLY LEU GLY ALA MET GLY THR ALA MET ALA THR GLN PHE SEQRES 3 A 298 LEU LYS GLN GLY HIS THR PRO THR VAL TRP ASN ARG THR SEQRES 4 A 298 ALA ALA LYS ALA ASN PRO LEU VAL GLU GLN GLY ALA HIS SEQRES 5 A 298 LEU ALA ALA THR ILE PRO ALA ALA ILE ALA ALA SER PRO SEQRES 6 A 298 LEU LEU ILE PHE CYS LEU LEU ASP ASN ALA ALA VAL GLU SEQRES 7 A 298 GLN THR LEU ALA ALA GLY PRO PRO SER LEU ALA GLY LYS SEQRES 8 A 298 THR ILE LEU ASN LEU THR ASN GLY THR PRO SER GLN ALA SEQRES 9 A 298 ARG ARG LEU ALA THR LEU ALA SER ALA ARG GLY ALA ARG SEQRES 10 A 298 TYR PHE HIS GLY GLY ILE MET ALA THR PRO ASP MET ILE SEQRES 11 A 298 GLY ALA PRO HIS ALA VAL ILE LEU TYR SER GLY GLY GLY SEQRES 12 A 298 SER ALA GLU THR TYR ALA SER VAL GLU GLY VAL LEU ALA SEQRES 13 A 298 VAL LEU GLY SER GLY LYS TYR LEU GLY ASP ASP ALA GLY SEQRES 14 A 298 SER ALA SER LEU HIS ASP LEU ALA LEU LEU SER GLY MET SEQRES 15 A 298 TYR GLY LEU PHE ALA GLY PHE LEU HIS ALA THR ALA LEU SEQRES 16 A 298 VAL ARG SER GLU GLY GLU GLY VAL SER ALA THR GLU PHE SEQRES 17 A 298 LEU GLY LEU LEU ALA PRO TRP LEU GLN ALA MET THR GLY SEQRES 18 A 298 TYR LEU GLY LEU LEU ALA ARG GLN ILE ASP ASP GLY VAL SEQRES 19 A 298 TYR THR ALA GLN THR SER ASN LEU GLU MET GLN LEU VAL SEQRES 20 A 298 ALA LEU GLU ASN ALA CYS ALA ALA SER ARG GLU GLN GLY SEQRES 21 A 298 VAL SER ALA GLU VAL MET LEU PRO LEU LYS GLY LEU VAL SEQRES 22 A 298 GLU ARG ALA VAL ARG GLU GLY ARG GLY GLY HIS ASP ILE SEQRES 23 A 298 SER SER LEU ILE ASP TYR PHE ARG ASN ALA SER VAL SEQRES 1 B 298 MET ALA THR THR THR THR THR THR LYS LEU THR ILE PHE SEQRES 2 B 298 GLY LEU GLY ALA MET GLY THR ALA MET ALA THR GLN PHE SEQRES 3 B 298 LEU LYS GLN GLY HIS THR PRO THR VAL TRP ASN ARG THR SEQRES 4 B 298 ALA ALA LYS ALA ASN PRO LEU VAL GLU GLN GLY ALA HIS SEQRES 5 B 298 LEU ALA ALA THR ILE PRO ALA ALA ILE ALA ALA SER PRO SEQRES 6 B 298 LEU LEU ILE PHE CYS LEU LEU ASP ASN ALA ALA VAL GLU SEQRES 7 B 298 GLN THR LEU ALA ALA GLY PRO PRO SER LEU ALA GLY LYS SEQRES 8 B 298 THR ILE LEU ASN LEU THR ASN GLY THR PRO SER GLN ALA SEQRES 9 B 298 ARG ARG LEU ALA THR LEU ALA SER ALA ARG GLY ALA ARG SEQRES 10 B 298 TYR PHE HIS GLY GLY ILE MET ALA THR PRO ASP MET ILE SEQRES 11 B 298 GLY ALA PRO HIS ALA VAL ILE LEU TYR SER GLY GLY GLY SEQRES 12 B 298 SER ALA GLU THR TYR ALA SER VAL GLU GLY VAL LEU ALA SEQRES 13 B 298 VAL LEU GLY SER GLY LYS TYR LEU GLY ASP ASP ALA GLY SEQRES 14 B 298 SER ALA SER LEU HIS ASP LEU ALA LEU LEU SER GLY MET SEQRES 15 B 298 TYR GLY LEU PHE ALA GLY PHE LEU HIS ALA THR ALA LEU SEQRES 16 B 298 VAL ARG SER GLU GLY GLU GLY VAL SER ALA THR GLU PHE SEQRES 17 B 298 LEU GLY LEU LEU ALA PRO TRP LEU GLN ALA MET THR GLY SEQRES 18 B 298 TYR LEU GLY LEU LEU ALA ARG GLN ILE ASP ASP GLY VAL SEQRES 19 B 298 TYR THR ALA GLN THR SER ASN LEU GLU MET GLN LEU VAL SEQRES 20 B 298 ALA LEU GLU ASN ALA CYS ALA ALA SER ARG GLU GLN GLY SEQRES 21 B 298 VAL SER ALA GLU VAL MET LEU PRO LEU LYS GLY LEU VAL SEQRES 22 B 298 GLU ARG ALA VAL ARG GLU GLY ARG GLY GLY HIS ASP ILE SEQRES 23 B 298 SER SER LEU ILE ASP TYR PHE ARG ASN ALA SER VAL HET MG A 301 1 HET NAP A 302 48 HET BKN A 303 11 HET MG B 301 1 HET NAP B 302 48 HET BKN B 303 11 HETNAM MG MAGNESIUM ION HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM BKN ETHYL 5-OXOHEXANOATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 MG 2(MG 2+) FORMUL 4 NAP 2(C21 H28 N7 O17 P3) FORMUL 5 BKN 2(C8 H14 O3) FORMUL 9 HOH *185(H2 O) HELIX 1 AA1 GLY A 16 GLN A 29 1 14 HELIX 2 AA2 THR A 39 LYS A 42 5 4 HELIX 3 AA3 ALA A 43 GLN A 49 1 7 HELIX 4 AA4 THR A 56 SER A 64 1 9 HELIX 5 AA5 ASP A 73 ALA A 83 1 11 HELIX 6 AA6 THR A 100 ALA A 113 1 14 HELIX 7 AA7 THR A 126 ILE A 130 5 5 HELIX 8 AA8 TYR A 148 GLY A 159 1 12 HELIX 9 AA9 GLY A 169 SER A 198 1 30 HELIX 10 AB1 ALA A 205 GLY A 221 1 17 HELIX 11 AB2 TYR A 222 GLY A 233 1 12 HELIX 12 AB3 ASN A 241 GLY A 260 1 20 HELIX 13 AB4 MET A 266 GLU A 279 1 14 HELIX 14 AB5 ASP A 285 PHE A 293 5 9 HELIX 15 AB6 GLY B 16 GLN B 29 1 14 HELIX 16 AB7 THR B 39 LYS B 42 5 4 HELIX 17 AB8 ALA B 43 GLN B 49 1 7 HELIX 18 AB9 THR B 56 SER B 64 1 9 HELIX 19 AC1 ASP B 73 ALA B 83 1 11 HELIX 20 AC2 THR B 100 ARG B 114 1 15 HELIX 21 AC3 THR B 126 ILE B 130 5 5 HELIX 22 AC4 TYR B 148 GLY B 159 1 12 HELIX 23 AC5 GLY B 169 SER B 198 1 30 HELIX 24 AC6 SER B 204 GLY B 221 1 18 HELIX 25 AC7 TYR B 222 GLY B 233 1 12 HELIX 26 AC8 ASN B 241 GLY B 260 1 20 HELIX 27 AC9 MET B 266 GLU B 279 1 14 HELIX 28 AD1 ASP B 285 ARG B 294 5 10 SHEET 1 AA1 8 HIS A 52 LEU A 53 0 SHEET 2 AA1 8 THR A 34 TRP A 36 1 N VAL A 35 O HIS A 52 SHEET 3 AA1 8 LEU A 10 PHE A 13 1 N ILE A 12 O THR A 34 SHEET 4 AA1 8 LEU A 66 PHE A 69 1 O ILE A 68 N THR A 11 SHEET 5 AA1 8 THR A 92 ASN A 95 1 O THR A 92 N LEU A 67 SHEET 6 AA1 8 ARG A 117 MET A 124 1 O ARG A 117 N ILE A 93 SHEET 7 AA1 8 VAL A 136 GLY A 141 -1 O VAL A 136 N MET A 124 SHEET 8 AA1 8 SER A 160 TYR A 163 1 O LYS A 162 N TYR A 139 SHEET 1 AA2 8 HIS B 52 LEU B 53 0 SHEET 2 AA2 8 THR B 34 TRP B 36 1 N VAL B 35 O HIS B 52 SHEET 3 AA2 8 LEU B 10 PHE B 13 1 N LEU B 10 O THR B 34 SHEET 4 AA2 8 LEU B 66 PHE B 69 1 O ILE B 68 N THR B 11 SHEET 5 AA2 8 THR B 92 ASN B 95 1 O THR B 92 N LEU B 67 SHEET 6 AA2 8 ARG B 117 MET B 124 1 O ARG B 117 N ILE B 93 SHEET 7 AA2 8 VAL B 136 GLY B 141 -1 O VAL B 136 N MET B 124 SHEET 8 AA2 8 SER B 160 TYR B 163 1 O LYS B 162 N TYR B 139 LINK O THR A 100 MG MG A 301 1555 1555 2.89 LINK O THR B 100 MG MG B 301 1555 1555 2.82 LINK OG SER B 172 MG MG B 301 1555 1555 2.95 SITE 1 AC1 6 ASN A 74 GLY A 99 THR A 100 ALA A 104 SITE 2 AC1 6 HIS A 120 SER A 172 SITE 1 AC2 30 LEU A 15 GLY A 16 ALA A 17 MET A 18 SITE 2 AC2 30 ASN A 37 ARG A 38 THR A 39 LYS A 42 SITE 3 AC2 30 CYS A 70 LEU A 71 LEU A 72 ALA A 76 SITE 4 AC2 30 GLN A 79 THR A 97 ASN A 98 ILE A 123 SITE 5 AC2 30 ALA A 125 HOH A 402 HOH A 409 HOH A 415 SITE 6 AC2 30 HOH A 429 HOH A 430 HOH A 443 HOH A 451 SITE 7 AC2 30 HOH A 459 THR B 239 SER B 240 ASN B 241 SITE 8 AC2 30 MET B 244 BKN B 303 SITE 1 AC3 11 THR A 239 SER A 240 MET A 244 GLN A 245 SITE 2 AC3 11 ALA A 248 HOH A 450 LEU B 179 MET B 182 SITE 3 AC3 11 TYR B 183 PHE B 186 NAP B 302 SITE 1 AC4 6 ASN B 74 GLY B 99 THR B 100 ALA B 104 SITE 2 AC4 6 HIS B 120 SER B 172 SITE 1 AC5 28 THR A 239 SER A 240 ASN A 241 MET A 244 SITE 2 AC5 28 BKN A 303 GLY B 14 LEU B 15 GLY B 16 SITE 3 AC5 28 ALA B 17 MET B 18 ASN B 37 ARG B 38 SITE 4 AC5 28 THR B 39 CYS B 70 LEU B 71 LEU B 72 SITE 5 AC5 28 ALA B 76 GLN B 79 ASN B 98 ILE B 123 SITE 6 AC5 28 ALA B 125 THR B 126 PRO B 127 HOH B 404 SITE 7 AC5 28 HOH B 423 HOH B 427 HOH B 438 HOH B 451 SITE 1 AC6 10 LEU A 179 MET A 182 TYR A 183 NAP A 302 SITE 2 AC6 10 TYR B 222 THR B 239 SER B 240 MET B 244 SITE 3 AC6 10 GLN B 245 HOH B 409 CRYST1 39.128 165.040 46.527 90.00 105.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025557 0.000000 0.007019 0.00000 SCALE2 0.000000 0.006059 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022289 0.00000